Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02539 and BL02261
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:09
# Commandline: needle
# -asequence dna-align/BSNT_02539___ylmE.1.5803.seq
# -bsequence dna-align/BL02261___ylmE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02539___ylmE-BL02261___ylmE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02539___ylmE-BL02261___ylmE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02539___ylmE
# 2: BL02261___ylmE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 723
# Identity: 490/723 (67.8%)
# Similarity: 490/723 (67.8%)
# Gaps: 57/723 ( 7.9%)
# Score: 1598.5
#
#
#=======================================
BSNT_02539___ 1 TTGCGTGTTGTTGAT---------AATTTACGACATATAAACGAACGAAT 41
||.||| |||||||||||||||||.||..|.||
BL02261___ylm 1 ---------GTGGATGTAAAAAGCAATTTACGACATATAAATGACAGGAT 41
BSNT_02539___ 42 AAACGAAGCATGTAACAGATCGGGCCGCA-GCTCCGATGAAGTTACGGTT 90
.||||||||.||||.||.|.|||||.|.| || ||||.|||.|..|.||.
BL02261___ylm 42 CAACGAAGCGTGTATCAAAGCGGGCAGAACGC-CCGACGAAATATCCGTC 90
BSNT_02539___ 91 ATTGCAGTCACAAAATATGTATCACCTGAAAGAGCACAGGAGGCAGTAGA 140
||.||.|||||.||||||||.||.||.|||.|.||.||||..||..|.||
BL02261___ylm 91 ATCGCTGTCACGAAATATGTTTCCCCGGAACGGGCGCAGGCAGCGCTGGA 140
BSNT_02539___ 141 TGCTGGCATCACCTGCC---TCGGAGAGAATCGGGATGCGGAACTGCTCC 187
|||.||.|||| |.| |.||.||.||.||.|||.|.|..|||||.|
BL02261___ylm 141 TGCAGGAATCA---GGCATTTGGGTGAAAACCGTGATACCGGGCTGCTTC 187
BSNT_02539___ 188 GCAAACAGGAATTGATGAAAG---GTAATCCGGAATGGCATTTTATCGGC 234
.|||.|..||..|..|||||| |..|.||||.|||||||||||||||.
BL02261___ylm 188 ACAAGCTCGACGTTCTGAAAGACAGCGAACCGGTATGGCATTTTATCGGA 237
BSNT_02539___ 235 AGTTTGCAATCAAGAAAAGCAAAATCTGTCGTCAATGCGGTTTCCTATAT 284
|...||||..|.|||||.|.||||.|..||.||.||...||.||.|||||
BL02261___ylm 238 ACCCTGCAGACGAGAAAGGTAAAAGCAATCATCGATCATGTCTCATATAT 287
BSNT_02539___ 285 CCATTCCCTAGACCGGCTCTCATTAGCGAAAGAAATTGAAAAACGGGCTG 334
||||||..|||||.||||.|||.|.||..|.||||||.||||..||||..
BL02261___ylm 288 CCATTCTTTAGACAGGCTTTCACTGGCCGATGAAATTCAAAAGAGGGCAA 337
BSNT_02539___ 335 AA-----GGT--ACTGTACGATGCTTTGTGCAGGTCAATACCTCTCTTGA 377
|| |.| ||||| |||||.||||||||.||.||.|||||
BL02261___ylm 338 AAAAACCGATTGACTGT-------TTTGTCCAGGTCAACACATCCCTTGA 380
BSNT_02539___ 378 GCCTTCTAAACACGGCATGAAAAAAGAAGAAGTCATTCCATTCATACAGG 427
.|||||.||||||||||||..||||||||||||..||||.||..||.|..
BL02261___ylm 381 ACCTTCAAAACACGGCATGGCAAAAGAAGAAGTTCTTCCTTTTGTAAAAA 430
BSNT_02539___ 428 AGCTTTCCGGTTTCGAACATATCCTTGTTGCCGGGCTGATGACAATGGCT 477
|.||.||.||.|.||||.|.||.|...|.||.||..|.|||||.||||||
BL02261___ylm 431 AACTGTCTGGATACGAAAACATTCGGATCGCGGGATTAATGACGATGGCT 480
BSNT_02539___ 478 CCGCTGACTGATGATCAAGATCAG---ATCAGAAGCTGTTTCAGGTCGCT 524
||..|.||.|||||| ||..|| ||||||||||||||..|.|.|||
BL02261___ylm 481 CCTTTTACGGATGAT---GAGAAGGCAATCAGAAGCTGTTTTCGCTTGCT 527
BSNT_02539___ 525 GAGAGAACTCCGTGACCAGGTTCAGAAACTGAACCAGCCGAACGCTCCGT 574
||||||.||.||.|||.||||.|.|...||..|.||...|||||||||||
BL02261___ylm 528 GAGAGAGCTGCGCGACGAGGTGCGGGGCCTTGATCAATGGAACGCTCCGT 577
BSNT_02539___ 575 GTACTGAACTGTCGATGGGCATGTCAAATGATTTTGAAATTGCAATTGAA 624
|.|..||.||.||||||||.|||||.||.||.|.||..||.|||.|.||.
BL02261___ylm 578 GCAGCGAGCTTTCGATGGGTATGTCTAACGACTATGCGATCGCAGTCGAG 627
BSNT_02539___ 625 GAAGGAGCTACTTATATT----AGAATCGGCTCATCGTTAGTCGGAAATG 670
|||||.||.|| ||| ||||||||.||.||.|||||||||||||
BL02261___ylm 628 GAAGGCGCGAC----ATTCGTCAGAATCGGATCTTCCTTAGTCGGAAATG 673
BSNT_02539___ 671 AAACAGGGGGTGTACAGCAATGA 693
||||.||.||||.|||...||||
BL02261___ylm 674 AAACTGGAGGTGGACAATCATGA 696
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