Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02539 and BL02261

See Amino acid alignment / Visit BSNT_02539 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:09
# Commandline: needle
#    -asequence dna-align/BSNT_02539___ylmE.1.5803.seq
#    -bsequence dna-align/BL02261___ylmE.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02539___ylmE-BL02261___ylmE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02539___ylmE-BL02261___ylmE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02539___ylmE
# 2: BL02261___ylmE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 723
# Identity:     490/723 (67.8%)
# Similarity:   490/723 (67.8%)
# Gaps:          57/723 ( 7.9%)
# Score: 1598.5
# 
#
#=======================================

BSNT_02539___      1 TTGCGTGTTGTTGAT---------AATTTACGACATATAAACGAACGAAT     41
                              ||.|||         |||||||||||||||||.||..|.||
BL02261___ylm      1 ---------GTGGATGTAAAAAGCAATTTACGACATATAAATGACAGGAT     41

BSNT_02539___     42 AAACGAAGCATGTAACAGATCGGGCCGCA-GCTCCGATGAAGTTACGGTT     90
                     .||||||||.||||.||.|.|||||.|.| || ||||.|||.|..|.||.
BL02261___ylm     42 CAACGAAGCGTGTATCAAAGCGGGCAGAACGC-CCGACGAAATATCCGTC     90

BSNT_02539___     91 ATTGCAGTCACAAAATATGTATCACCTGAAAGAGCACAGGAGGCAGTAGA    140
                     ||.||.|||||.||||||||.||.||.|||.|.||.||||..||..|.||
BL02261___ylm     91 ATCGCTGTCACGAAATATGTTTCCCCGGAACGGGCGCAGGCAGCGCTGGA    140

BSNT_02539___    141 TGCTGGCATCACCTGCC---TCGGAGAGAATCGGGATGCGGAACTGCTCC    187
                     |||.||.||||   |.|   |.||.||.||.||.|||.|.|..|||||.|
BL02261___ylm    141 TGCAGGAATCA---GGCATTTGGGTGAAAACCGTGATACCGGGCTGCTTC    187

BSNT_02539___    188 GCAAACAGGAATTGATGAAAG---GTAATCCGGAATGGCATTTTATCGGC    234
                     .|||.|..||..|..||||||   |..|.||||.|||||||||||||||.
BL02261___ylm    188 ACAAGCTCGACGTTCTGAAAGACAGCGAACCGGTATGGCATTTTATCGGA    237

BSNT_02539___    235 AGTTTGCAATCAAGAAAAGCAAAATCTGTCGTCAATGCGGTTTCCTATAT    284
                     |...||||..|.|||||.|.||||.|..||.||.||...||.||.|||||
BL02261___ylm    238 ACCCTGCAGACGAGAAAGGTAAAAGCAATCATCGATCATGTCTCATATAT    287

BSNT_02539___    285 CCATTCCCTAGACCGGCTCTCATTAGCGAAAGAAATTGAAAAACGGGCTG    334
                     ||||||..|||||.||||.|||.|.||..|.||||||.||||..||||..
BL02261___ylm    288 CCATTCTTTAGACAGGCTTTCACTGGCCGATGAAATTCAAAAGAGGGCAA    337

BSNT_02539___    335 AA-----GGT--ACTGTACGATGCTTTGTGCAGGTCAATACCTCTCTTGA    377
                     ||     |.|  |||||       |||||.||||||||.||.||.|||||
BL02261___ylm    338 AAAAACCGATTGACTGT-------TTTGTCCAGGTCAACACATCCCTTGA    380

BSNT_02539___    378 GCCTTCTAAACACGGCATGAAAAAAGAAGAAGTCATTCCATTCATACAGG    427
                     .|||||.||||||||||||..||||||||||||..||||.||..||.|..
BL02261___ylm    381 ACCTTCAAAACACGGCATGGCAAAAGAAGAAGTTCTTCCTTTTGTAAAAA    430

BSNT_02539___    428 AGCTTTCCGGTTTCGAACATATCCTTGTTGCCGGGCTGATGACAATGGCT    477
                     |.||.||.||.|.||||.|.||.|...|.||.||..|.|||||.||||||
BL02261___ylm    431 AACTGTCTGGATACGAAAACATTCGGATCGCGGGATTAATGACGATGGCT    480

BSNT_02539___    478 CCGCTGACTGATGATCAAGATCAG---ATCAGAAGCTGTTTCAGGTCGCT    524
                     ||..|.||.||||||   ||..||   ||||||||||||||..|.|.|||
BL02261___ylm    481 CCTTTTACGGATGAT---GAGAAGGCAATCAGAAGCTGTTTTCGCTTGCT    527

BSNT_02539___    525 GAGAGAACTCCGTGACCAGGTTCAGAAACTGAACCAGCCGAACGCTCCGT    574
                     ||||||.||.||.|||.||||.|.|...||..|.||...|||||||||||
BL02261___ylm    528 GAGAGAGCTGCGCGACGAGGTGCGGGGCCTTGATCAATGGAACGCTCCGT    577

BSNT_02539___    575 GTACTGAACTGTCGATGGGCATGTCAAATGATTTTGAAATTGCAATTGAA    624
                     |.|..||.||.||||||||.|||||.||.||.|.||..||.|||.|.||.
BL02261___ylm    578 GCAGCGAGCTTTCGATGGGTATGTCTAACGACTATGCGATCGCAGTCGAG    627

BSNT_02539___    625 GAAGGAGCTACTTATATT----AGAATCGGCTCATCGTTAGTCGGAAATG    670
                     |||||.||.||    |||    ||||||||.||.||.|||||||||||||
BL02261___ylm    628 GAAGGCGCGAC----ATTCGTCAGAATCGGATCTTCCTTAGTCGGAAATG    673

BSNT_02539___    671 AAACAGGGGGTGTACAGCAATGA    693
                     ||||.||.||||.|||...||||
BL02261___ylm    674 AAACTGGAGGTGGACAATCATGA    696


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