Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02538 and BL02260

See Amino acid alignment / Visit BSNT_02538 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:09
# Commandline: needle
#    -asequence dna-align/BSNT_02538___ylmD.1.5803.seq
#    -bsequence dna-align/BL02260___ylmD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02538___ylmD-BL02260___ylmD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02538___ylmD-BL02260___ylmD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02538___ylmD
# 2: BL02260___ylmD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 914
# Identity:     530/914 (58.0%)
# Similarity:   530/914 (58.0%)
# Gaps:         196/914 (21.4%)
# Score: 1480.5
# 
#
#=======================================

BSNT_02538___      1 ---------------------------------------------ATGAT      5
                                                                  .||||
BL02260___ylm      1 ATGAATACATATAACCCCTTTCGTCTTGATGCTCCGTCAATGCTTTTGAT     50

BSNT_02538___      6 ACAAGACTGGGCTCAAACGAATCAAAACAACAAAGAGGTCATTGCCGGAT     55
                     ..|.||.|||..|||.|||....|||.|..|..||..||||..|||||||
BL02260___ylm     51 TGAGGAATGGAATCAGACGGCGGAAACCGGCGGAGCCGTCACAGCCGGAT    100

BSNT_02538___     56 TTACGACAAAAAACGGCGGTGTCAGCCAAAAGCCTTTTGAATCGTTAAAT    105
                     |||||||||||||||||||.|..|||.||..|||||||.|.||.||.|||
BL02260___ylm    101 TTACGACAAAAAACGGCGGAGAAAGCGAACCGCCTTTTCACTCATTGAAT    150

BSNT_02538___    106 ACAGGATTGCACGTTCATGACAAAGATGCAG-ATGTAGTTAAAAATCGTG    154
                     |||||..||||||||||.||..|.|| .||| ||||..|.||.||..|..
BL02260___ylm    151 ACAGGGCTGCACGTTCAGGATCATGA-ACAGCATGTCATCAATAACAGAA    199

BSNT_02538___    155 AATATATTGCCGATATGTTTAATACTGATTTGCA-GTCTTGGGTATTCGC    203
                     ||.|..|||||||.||..|.||.||.|||.|||| |.| ||||||||.||
BL02260___ylm    200 AAAAGGTTGCCGACATCCTAAAAACAGATCTGCACGAC-TGGGTATTTGC    248

BSNT_02538___    204 TGATCAGACACATGATAATCGCGTTCAGAAAGTGACGCAGAGGGATAGGG    253
                     |||||||||.|||||..|.||..||||.|||||||||.|..|.|||.|.|
BL02260___ylm    249 TGATCAGACGCATGAAGACCGGATTCATAAAGTGACGGATGGCGATCGCG    298

BSNT_02538___    254 GAAAAGGCGC---CCGTGAGTATCACACGGCTCTAAAAGCAACGGACGGG    300
                     ..|..|||||   |||   .||..|.|||||.||.||.||.||||||||.
BL02260___ylm    299 CCAGCGGCGCTTTCCG---ATACGATACGGCGCTGAAGGCTACGGACGGA    345

BSNT_02538___    301 CTCTATACAAATGAAA---AAAATGTATTTTTAGCATTATGCTTTGCTGA    347
                     ||.||||||   ||.|   .|||..|.|||||.||..|.||||||||.||
BL02260___ylm    346 CTTTATACA---GACAGGCCAAACCTGTTTTTGGCGCTTTGCTTTGCCGA    392

BSNT_02538___    348 TTGTGTGCCTCTTTTCTTTTATGATCCGGTTAAGTCGCTTGTCGGAGTCG    397
                     .||.||.||..|||..|||||.||||||||....|||||.|||||..|||
BL02260___ylm    393 CTGCGTTCCCGTTTATTTTTACGATCCGGTCCGCTCGCTGGTCGGCATCG    442

BSNT_02538___    398 CCCATGCCGGGTGGAAAGGCACCGTCAAACAGATTGG---------CAGA    438
                     |.||.||.||.|||||||||||||     || .||||         ||| 
BL02260___ylm    443 CTCACGCGGGCTGGAAAGGCACCG-----CA-CTTGGGATCGCCGCCAG-    485

BSNT_02538___    439 GAAATGG-TGAAGCA-ATGGACTGA-GAAGGAAGGTTCAAATCCCTCAGA    485
                       .|||| |||  || .|||| |.| |..||||||.||.||||||.||||
BL02260___ylm    486 --CATGGTTGA--CATGTGGA-TCAGGCGGGAAGGGTCGAATCCCGCAGA    530

BSNT_02538___    486 TATTTACGCTGTTATTGGCCCGTCTATCAG--CGGAGCATGCTATACGGT    533
                     .||....||.||.||.||.||..|.|||.|  | |.|| |||||.||.||
BL02260___ylm    531 CATCCGTGCCGTGATCGGGCCTGCGATCGGTTC-GTGC-TGCTACACTGT    578

BSNT_02538___    534 AGACGACCGCGTCATGGATGCTGTCCGCGCATTGCCGGTTTCAGCAGACC    583
                     .|||||     |||||.|            ||.|.|....|||| |.|.|
BL02260___ylm    579 CGACGA-----TCATGTA------------ATAGACAAAATCAG-AAATC    610

BSNT_02538___    584 TTGCCGTTAATC-AGACGGCAAAGGC------ACAATATCAGCTTGATCT    626
                     ||.|..||.|.| |||.|.|||||.|      ||.|||..||        
BL02260___ylm    611 TTCCTCTTCAGCAAGAAGACAAAGCCTTTTTGACGATAAAAG--------    652

BSNT_02538___    627 GAAAGAGCTGAACCGTCTTATACTGATGGACAGCGGTTTGGCAAGTGAAC    676
                       |||.|..|.|||||||    |..||..|.||         ||||||||
BL02260___ylm    653 --AAGGGGAGTACCGTCT----CGAATTAAAAG---------AAGTGAAC    687

BSNT_02538___    677 AAATTTCTGTCAGCGGTTTATGCACG-----------------------G    703
                     |       |.||||.|.||.|.||||                       |
BL02260___ylm    688 A-------GGCAGCTGCTTGTACACGCCGGAATTCCAAACGGCCAGATCG    730

BSNT_02538___    704 AA---AG-----------CGAGC------CGTCTC-----TTTTCTATTC    728
                     ||   ||           |||||      ||| ||     |||||   ||
BL02260___ylm    731 AAGTGAGTTCCCTTTGTACGAGCTGCGAGCGT-TCACTGTTTTTC---TC    776

BSNT_02538___    729 TCACCGCCGCGATCAGGGGAAAACTGGACGGATGATGTCCTTTATCGGAA    778
                     .||.||..|.||.|.|||.|||||.|||||||||||||||||.||||||.
BL02260___ylm    777 CCATCGGAGAGACCGGGGAAAAACCGGACGGATGATGTCCTTCATCGGAT    826

BSNT_02538___    779 TGAAGGAGGCATAA    792
                     |.|||||||.|||.
BL02260___ylm    827 TAAAGGAGGTATAG    840


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02538 and BL02260

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
