Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02533 and BL02257

See Amino acid alignment / Visit BSNT_02533 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:09
# Commandline: needle
#    -asequence dna-align/BSNT_02533___ylmA.1.5803.seq
#    -bsequence dna-align/BL02257___ylmA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02533___ylmA-BL02257___ylmA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02533___ylmA-BL02257___ylmA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02533___ylmA
# 2: BL02257___ylmA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 827
# Identity:     559/827 (67.6%)
# Similarity:   559/827 (67.6%)
# Gaps:          61/827 ( 7.4%)
# Score: 1779.0
# 
#
#=======================================

BSNT_02533___      1 ATGATTTTGCAGCTTGACAATGTCTCACTAAAACGGAATGGGAAATGGAT     50
                     .||.||.||||||||||..|||..|||||||||||.||.||..|.|||||
BL02257___ylm      1 GTGGTTCTGCAGCTTGAGCATGCTTCACTAAAACGAAACGGAGAGTGGAT     50

BSNT_02533___     51 ACTGAGAGATATTCATTGGAAGGTGGAAGAAAAGGAAAATTGGGTGCTTT    100
                     |.|.|..||||||.||||||.|||||||.|...|||..|.||||.|.|.|
BL02257___ylm     51 ATTAAAGGATATTGATTGGACGGTGGAAAAGGGGGAGCACTGGGCGTTAT    100

BSNT_02533___    101 ACGGCCTAAATGGCGCCGGGAAGACGGCGCTGTTAAATATGCTTTGCTCA    150
                     ||||..|.||.||.|||||.||.||.||.|||.|.||||||||.|||.|.
BL02257___ylm    101 ACGGATTGAACGGAGCCGGCAAAACCGCACTGCTCAATATGCTGTGCGCT    150

BSNT_02533___    151 TATTATTTTCCAACATCAGGCGAGATGCAG-----GTGCTTGGCCATGAA    195
                     |||||||||||.|||..|||..|     ||     |||.|.||.|..|||
BL02257___ylm    151 TATTATTTTCCGACAATAGGAAA-----AGTCACCGTGTTAGGGCGCGAA    195

BSNT_02533___    196 TTTGGCAAAACAGAGCTTGGGGAAAAGCTCAGACGTAAAATTGGCCTCGT    245
                     ||.||.|||||.||||||||.||.|||||..|.||.|||||.|||||.||
BL02257___ylm    196 TTCGGAAAAACGGAGCTTGGCGAGAAGCTTCGGCGAAAAATCGGCCTTGT    245

BSNT_02533___    246 CTCAGCAGCTCTTCAGCAAAAATTGTATCCGGCAGATTCA--GCCTTTGA    293
                     .|||||.||.||.|||||.||..|.|||||.|.|||  ||  ||.|||||
BL02257___ylm    246 TTCAGCCGCCCTGCAGCAGAAGCTTTATCCTGAAGA--CAGTGCATTTGA    293

BSNT_02533___    294 AATTGCTTTGAGCGGAGCTTACGCTTCGATTGGGTTATATGAAACGCC--    341
                     |||||.|||.|||||.||.|.|||||||||.||..|.||||||.||||  
BL02257___ylm    294 AATTGTTTTAAGCGGCGCCTTCGCTTCGATCGGCCTTTATGAATCGCCTT    343

BSNT_02533___    342 --AAGTAAGGAAACCAGGGAAAAAGCGATTGGTTTGTTAGAGGACTTGGG    389
                       .|||..|    .|||.||.||||||.|.|...|.||.|||||.||.||
BL02257___ylm    344 CACAGTCTG----TCAGAGAGAAAGCGGTCGCCCTCTTGGAGGAATTCGG    389

BSNT_02533___    390 AGCAATTGAATATGCCGATCGTCGCTATGAAACCCTTTCTCAAGGGGAAA    439
                     ..|.||....|||||.||..|..|.||||||||.||.||.||.||.||||
BL02257___ylm    390 CTCCATCCGCTATGCGGACAGGAGATATGAAACGCTCTCCCAGGGAGAAA    439

BSNT_02533___    440 AACAAAGAGCGTTGATTGCTAGAGCACTAATGGCCGATCCGGAGTTGCTG    489
                     |.||||..|.|.||||.||.||.||..|.|||||||||||.|||.|||||
BL02257___ylm    440 AGCAAAAGGTGCTGATCGCAAGGGCCTTGATGGCCGATCCTGAGCTGCTG    489

BSNT_02533___    490 ATACTGGATGAACCAGTCACAGGGCTGGATTTTATTGCCCGGGAAAAGTT    539
                     ||.||.||.|||||.|||||.||.||.||||||||.||..||||..||.|
BL02257___ylm    490 ATTCTCGACGAACCTGTCACCGGTCTAGATTTTATCGCGAGGGAGCAGGT    539

BSNT_02533___    540 GTTAGATACGATTACATACATTGCAAACAAAGAAAATGCACCATCTATCC    589
                     |.|.||||||.||..|.|.|||||.||.|||||.|.|||.||.||.||.|
BL02257___ylm    540 GCTGGATACGGTTGAACAAATTGCCAAGAAAGACAGTGCGCCGTCCATGC    589

BSNT_02533___    590 TTTATGTGACTCATCATGCTGAAGAAATTCTGCCTGTCTTT--GATAAAG    637
                     ||||.||.|||||.|||||.|||||||||||.||.| ||||  |..||| 
BL02257___ylm    590 TTTACGTTACTCACCATGCAGAAGAAATTCTCCCCG-CTTTCAGCCAAA-    637

BSNT_02533___    638 CCCTTTTATTAAAACAGGGAGAGGTCTTTGGATCCG--GAGAAATA-AAG    684
                     ||||..|.||||||.|.||.||.||.||||    ||  |.||||.| |||
BL02257___ylm    638 CCCTGCTGTTAAAAAAAGGGGAAGTGTTTG----CGTTGGGAAAGACAAG    683

BSNT_02533___    685 -GAAATGCTTACTGATCAAGTACTTTCCGCTTTTTTTGATACGCCAATCC    733
                      ||.|||.|..|.|...|.||.||.||||..|||||.||||.|||..|||
BL02257___ylm    684 AGAGATGATGTCCGGCGAGGTTCTGTCCGAATTTTTCGATATGCCCGTCC    733

BSNT_02533___    734 ATGTATTATGGAATCAGGATCGGCCGTTTTT-------AACAAGAGCTGA    776
                     |.|...||||||...|.||||||||||..||       || ||.|.||| 
BL02257___ylm    734 AGGCGGTATGGACGGAAGATCGGCCGTACTTGTCCAAGAA-AAAAACTG-    781

BSNT_02533___    777 GCCGATAACGAATGCCTGA--------    795
                             |.||  |||.|        
BL02257___ylm    782 --------CAAA--CCTCAATGTTTAA    798


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02533 and BL02257

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
