Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02531 and BL02255
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:09
# Commandline: needle
# -asequence dna-align/BSNT_02531___sigE.1.5803.seq
# -bsequence dna-align/BL02255___sigE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02531___sigE-BL02255___sigE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02531___sigE-BL02255___sigE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02531___sigE
# 2: BL02255___sigE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 721
# Identity: 581/721 (80.6%)
# Similarity: 581/721 (80.6%)
# Gaps: 2/721 ( 0.3%)
# Score: 2333.0
#
#
#=======================================
BSNT_02531___ 1 ATGAAAAAACTGAAATTACGGTTGACGCACCTCTGGTATAAGCTGCTGAT 50
|||||||||||.||||||.||||.||..|.||.|||||.||.||..|.||
BL02255___sig 1 ATGAAAAAACTAAAATTAAGGTTAACCTATCTATGGTACAAACTTTTAAT 50
BSNT_02531___ 51 GAAACTTGGGCTGAAAAGTGATGAAGTCTATTACATAGGCGGGAGTGAAG 100
||||||.|||||||||||.||.|||.|.|||||.||.|||||.||.||.|
BL02255___sig 51 GAAACTGGGGCTGAAAAGCGACGAAATTTATTATATCGGCGGAAGCGAGG 100
BSNT_02531___ 101 CCCTGCCGCCTCCATTATCTAAAGATGAGGAGCAGGT-TTTGTTAATGAA 149
|.||.||.||.|||||.||.||||||||.|||||||| .||.|..|| ||
BL02255___sig 101 CGCTTCCCCCGCCATTGTCAAAAGATGAAGAGCAGGTGCTTCTCCAT-AA 149
BSNT_02531___ 150 GCTCCCAAACGGCGATCAGGCGGCGCGCGCCATTCTAATTGAACGCAATT 199
|||.||..||||.|||||||||||.||.||.|||.|.||||||||.|||.
BL02255___sig 150 GCTGCCTGACGGTGATCAGGCGGCACGAGCGATTTTGATTGAACGAAATC 199
BSNT_02531___ 200 TGCGTCTGGTCGTATATATCGCCCGTAAATTTGAAAATACGGGAATTAAT 249
|..|.||||||||.||.|||||..|.||||||||||||||.|||||.|||
BL02255___sig 200 TCAGACTGGTCGTGTACATCGCGAGAAAATTTGAAAATACAGGAATCAAT 249
BSNT_02531___ 250 ATAGAGGATTTAATCAGCATCGGTACCATCGGACTAATCAAAGCTGTGAA 299
||.||||||||||||..||||||.||.|||||.||.||||||||.|||||
BL02255___sig 250 ATCGAGGATTTAATCTCCATCGGCACGATCGGGCTCATCAAAGCGGTGAA 299
BSNT_02531___ 300 TACATTCAATCCAGAAAAGAAAATCAAGCTTGCTACCTATGCCTCCCGGT 349
|||.||.|||||.||.||.||||||||.||.|||||.|||||.|||.|.|
BL02255___sig 300 TACGTTTAATCCCGAGAAAAAAATCAAACTGGCTACATATGCTTCCAGAT 349
BSNT_02531___ 350 GTATAGAAAATGAAATCCTGATGTATTTAAGAAGAAATAACAAAATCCGT 399
|.||.|||||||||||..|||||||||||||||||||.||.|||||||||
BL02255___sig 350 GCATTGAAAATGAAATTTTGATGTATTTAAGAAGAAACAATAAAATCCGT 399
BSNT_02531___ 400 TCAGAGGTTTCCTTTGATGAACCGCTTAATATTGATTGGGACGGCAATGA 449
||||||||.||.||.||.||||||||.||.||.|||||||||||.|||||
BL02255___sig 400 TCAGAGGTATCATTCGACGAACCGCTGAACATCGATTGGGACGGAAATGA 449
BSNT_02531___ 450 GCTTTTGCTTTCTGATGTGCTCGGCACTGACGATGACATCATCACTAAAG 499
|||..|.||.||.|||||||||||.||.||..|.|||||.||.||.||||
BL02255___sig 450 GCTGCTTCTCTCAGATGTGCTCGGAACAGAAAACGACATTATTACAAAAG 499
BSNT_02531___ 500 ACATAGAAGCTAACGTCGATAAAAAGCTTTTGAAAAAAGCGCTTGAACAG 549
||||.|||||.|||||.||.||.|||||..||||||||||||||||||||
BL02255___sig 500 ACATCGAAGCAAACGTTGACAAGAAGCTGCTGAAAAAAGCGCTTGAACAG 549
BSNT_02531___ 550 CTTAATGAGAGAGAAAAGCAAATCATGGAGCTGCGGTTTGGGCTTGTCGG 599
||.|||||.||||||||.||.|||||||||||.||.||.|||||||||||
BL02255___sig 550 CTCAATGACAGAGAAAAACAGATCATGGAGCTCCGTTTCGGGCTTGTCGG 599
BSNT_02531___ 600 TGAAGAAGAAAAAACCCAAAAGGATGTAGCGGATATGATGGGGATTTCTC 649
.|..|||||||||||.|||||.||.||.||.||||||.|.|||||.||.|
BL02255___sig 600 AGGGGAAGAAAAAACACAAAAAGACGTTGCCGATATGCTCGGGATCTCCC 649
BSNT_02531___ 650 AGTCTTATATTTCGCGGCTTGAGAAAAGAATTATAAAAAGATTGAGAAAA 699
||||.||||||||.||.|||||.|||||||||||.|||||..|..|||||
BL02255___sig 650 AGTCATATATTTCCCGACTTGAAAAAAGAATTATTAAAAGGCTCCGAAAA 699
BSNT_02531___ 700 GAGTTCAACAAAATGGTGTAA 720
||.||||||||.|||||.|||
BL02255___sig 700 GAATTCAACAAGATGGTTTAA 720
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