Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home
About
Genes
DNA alignment: BSNT_03421 and BL02228

See Amino acid alignment / Visit BSNT_03421 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:22
# Commandline: needle
#    -asequence dna-align/BSNT_03421___ypbG.1.5803.seq
#    -bsequence dna-align/BL02228.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03421___ypbG-BL02228.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03421___ypbG-BL02228.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03421___ypbG
# 2: BL02228
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 902
# Identity:     504/902 (55.9%)
# Similarity:   504/902 (55.9%)
# Gaps:         238/902 (26.4%)
# Score: 1316.5
# 
#
#=======================================

BSNT_03421___      1 ATGAAGCTA-----TCAGTGAAAATTGCCGGTGTACTAACTG--TTGCGG     43
                     ||| |.|||     |||||                    |||  || |||
BL02228            1 ATG-ATCTATTGGCTCAGT--------------------CTGGCTT-CGG     28

BSNT_03421___     44 -------CAGCGGCAATGACGGC---------AAAAATGTATGCAACAGC     77
                            ||.||||..|| |.||         .|||||||..||.|..||
BL02228           29 CCGCTTTCATCGGCCTTG-CTGCTTTAGTGTGGAAAATGTCAGCCATCGC     77

BSNT_03421___     78 -----AAAA---GGCAATCAT-TTGAAGACACATACGTTTCCTTTATCAA    118
                          ||||   ||      | ||||||                      
BL02228           78 GCGCGAAAACCGGG------TGTTGAAG----------------------     99

BSNT_03421___    119 AGATGAA---------GGGCAAGCCGCCTCTGACAA------------TC    147
                      |.||||         |||     |||  ||||.||            ||
BL02228          100 -GCTGAATTTTCACTCGGG-----CGC--CTGAAAAAGGAATTGAATGTC    141

BSNT_03421___    148 TTTTTTATTTCAGACATTCACAAACG---TCTCATCGATCAAGACCTTTT    194
                     ||||||||||||||.|||||.|..||   ..|||.||   |||||.||.|
BL02228          142 TTTTTTATTTCAGATATTCATAGGCGGACAGTCAGCG---AAGACATTAT    188

BSNT_03421___    195 --------AGAAAAAGCGCG-----AAGCCATGCCCCCCACTTGGTTATA    231
                             .||||.|.||||     .|||             |.||.||.
BL02228          189 TTGTGAAGTGAAAGAACGCGGGGTTCAGC-------------TCGTCATC    225

BSNT_03421___    232 ATCGGCGGTGATTTAGCTGAGGGCGGGGTGCCCAGTGCGAGAATCGAGGA    281
                     ||||||||.||.|||||.||||||||.||.||...|.|||||||.||.||
BL02228          226 ATCGGCGGCGACTTAGCAGAGGGCGGCGTCCCTTATACGAGAATTGAAGA    275

BSNT_03421___    282 AAACATCAAAAGGCTCGTACA--TTTCGGGG---TCCCTATCGTGTTTGT    326
                     |||.|||||||||||  |.||  |||  |||   ..|.|||    |||||
BL02228          276 AAATATCAAAAGGCT--TTCAAGTTT--GGGAAAAACGTAT----TTTGT    317

BSNT_03421___    327 GTGGGGGAATAATGATTATGAAG----TCAGGCAGCATAAGCTG------    366
                     .|||||.|||||.||||||||||    |||||    |.|.||||      
BL02228          318 ATGGGGAAATAACGATTATGAAGTTGATCAGG----AAAGGCTGCTGGAA    363

BSNT_03421___    367 -TATTC----CATA---TTTAAAGCGCACGGCATCATCACTCTGAGAAAT    408
                      |||||    ||||   |.|||.||              ||.||.|.|||
BL02228          364 ATATTCAAGACATACGGTGTAACGC--------------CTTTGCGCAAT    399

BSNT_03421___    409 GAGTCAGTCCCGTTTTCAT-ACAAT---GGGCATACGATTGCGA----TT    450
                     |..||.||    .||.||| ||.||   ||.||.||   ||..|    ||
BL02228          400 GCTTCGGT----ATTGCATGACCATCAAGGACAAAC---TGTCAATATTT    442

BSNT_03421___    451 GCGGGGGTTGATGATATCAGGATGGAGATGGATCATTATGAGGAAGCCAT    500
                     || ||.||.|||||.|||||..|.||..|||||.||||...||.|||..|
BL02228          443 GC-GGAGTGGATGACATCAGACTCGAATTGGATGATTACCCGGCAGCTCT    491

BSNT_03421___    501 CAAAGAACTTGATGAAAGCCAG-----CTGAATATTCTGGTTTGCCATAA    545
                     |...| .|.||    .||||.|     |.||.|.|.||.||.|..|||||
BL02228          492 CGGCG-GCGTG----CAGCCGGGTTTTCCGACTGTCCTTGTGTCACATAA    536

BSNT_03421___    546 TCCGGAGATTCATGAACAAATCAATGAAGATGACGGTATTGATGTGATAC    595
                     |||||||||||||.|.|||||..|.||.|..|||||||||||..|||||.
BL02228          537 TCCGGAGATTCATCATCAAATACAGGAGGCGGACGGTATTGACCTGATAT    586

BSNT_03421___    596 TCAGCGGACATACCCATGGAGGCCAGATCAGGTTTGGAAAATTCGGCCCT    645
                     |.|||||.||||||||.|||||.|||||..|.||.||.|.||||||.|..
BL02228          587 TGAGCGGTCATACCCACGGAGGACAGATTCGCTTCGGCAGATTCGGGCTC    636

BSNT_03421___    646 TATGAACTGGGGAAAACAGGTATTGTTAAAAACGCGGCATATCTAATCAG    695
                     |.||||.|.||...|||.||.|.||||...||.||..|.||..|.|||||
BL02228          637 TGTGAAATCGGAGGAACCGGCACTGTTTTCAAGGCTCCGTACTTGATCAG    686

BSNT_03421___    696 CAACGGCTACGGCACGACAAAAGTGCCTCTTCGTTTAGGTGCTGA-GCCT    744
                     |||||||||.||.|||.|.||..|.|||||.||..|.||.|| || |||.
BL02228          687 CAACGGCTATGGAACGTCGAAGCTTCCTCTGCGGCTCGGAGC-GAGGCCG    735

BSNT_03421___    745 GAAACTCACATTGTGACTCT--TTGCGGGCC----------AGAATAA--    780
                     |||||.||..|..|.|.|||  ||.||||||          ||.| ||  
BL02228          736 GAAACCCATCTGATCAATCTGGTTCCGGGCCCCCGTATGGAAGGA-AACT    784

BSNT_03421___    780 --    780
                       
BL02228          785 GA    786


#---------------------------------------
#---------------------------------------
Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03421 and BL02228

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
