Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03416 and BL02225
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:22
# Commandline: needle
# -asequence dna-align/BSNT_03416___ypdA.1.5803.seq
# -bsequence dna-align/BL02225.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03416___ypdA-BL02225.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03416___ypdA-BL02225.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03416___ypdA
# 2: BL02225
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 997
# Identity: 740/997 (74.2%)
# Similarity: 740/997 (74.2%)
# Gaps: 53/997 ( 5.3%)
# Score: 2620.0
#
#
#=======================================
BSNT_03416___ 1 ATGATTCAAGAAAAAGCAATTATTATAGGCGGAGGGCCTTGCGGACTATC 50
||||...|||||||||..||.|||||.|||||.||.||.|||||.||.||
BL02225 1 ATGAAAGAAGAAAAAGTGATCATTATCGGCGGCGGCCCCTGCGGGCTTTC 50
BSNT_03416___ 51 CGCTGCCATTCACCTAAAAGAAATTGGCATTGATGCCCTCGTCATCGAAA 100
.||.||.||||||.|..||||.||.||.||.|||||.||||||||.||.|
BL02225 51 AGCAGCTATTCACATGCAAGAGATCGGAATAGATGCACTCGTCATTGAGA 100
BSNT_03416___ 101 AAGGCAATGTCGTTAACAGTATTTA-CAATTATCCGACGCATCAAACCTT 149
||||.||..||||.|||||.||||| ||| |||||.||.||.||||||||
BL02225 101 AAGGAAACATCGTCAACAGCATTTATCAA-TATCCTACTCACCAAACCTT 149
BSNT_03416___ 150 TTTCAGCTCAAGTGAAAAGCTCGAAATCGGAGATGTGGCATTTATTACGG 199
||||||||||||.|||||.||.||.||.||.||||||||.||||||||.|
BL02225 150 TTTCAGCTCAAGCGAAAAACTGGAGATTGGCGATGTGGCTTTTATTACTG 199
BSNT_03416___ 200 AAAA-CAGGAAGCCTGTCAGAATTCAGGCTTTATCGTATTACCGAGAAGT 248
|||| || .|||||.|||||||.||||||..|.||.||||||.|.|||||
BL02225 200 AAAATCA-CAAGCCGGTCAGAAATCAGGCGCTTTCTTATTACAGGGAAGT 248
BSNT_03416___ 249 CGTCAAACGGAAAAACATCCGTGTTAACGCATTTGAAATGGTGCATAAAG 298
||.||||||.|||||..|.||..|.|||||.|||||.|..||.||....|
BL02225 249 CGCCAAACGAAAAAATCTACGGATCAACGCGTTTGAGAAAGTTCAATCCG 298
BSNT_03416___ 299 TGACGAAAACGGAAAATAATACATTTGTTATTGAGACGTCAAAAGAGACC 348
|.||.|||||.||.|||||...||||.|..|.||.||.|||||.||.||.
BL02225 299 TAACAAAAACAGAGAATAACCAATTTATCGTGGAAACATCAAAGGACACG 348
BSNT_03416___ 349 TACAAGACGCCATATTGTATCATCGCCACAGGCTATTATGATCATCCAAA 398
||...|.|..|.|.|||.||..||||.||.||.||||||||..||||.||
BL02225 349 TATTTGTCTTCTTTTTGCATTGTCGCAACGGGATATTATGACAATCCGAA 398
BSNT_03416___ 399 CTATATGAATGTACCCGGTG-AGAATTTGCCGAAAGTATTTCATTATTTT 447
|||||||||||||||.||.| |||..|| ||.||||||||||||||||||
BL02225 399 CTATATGAATGTACCGGGAGAAGACCTT-CCAAAAGTATTTCATTATTTT 447
BSNT_03416___ 448 AAAGAAGGC-CACCCGTATTTTGATAAAGATGTTGTTGTCATCGGCGGGA 496
|||| |||| ||.|||||.||||||||||||||||..||.|||||.||.|
BL02225 448 AAAG-AGGCTCATCCGTACTTTGATAAAGATGTTGCAGTTATCGGGGGCA 496
BSNT_03416___ 497 AAAATTCAAGCGTGGATGCTGCCCTTGAACTCGTGAAATCTGGGGCGC-- 544
||||.||||||||.||.||.||..|.||.|||||.||..| ||||||
BL02225 497 AAAACTCAAGCGTCGACGCGGCAATGGAGCTCGTTAAGGC--GGGCGCAA 544
BSNT_03416___ 545 GTGTCACAGTTTTATATAGGGGCAATGAGTATT-CTCCAAGCATTAAGCC 593
|.||.||.||.||.||.||.||.||.||.|||| |||| |||||.||.||
BL02225 545 GAGTGACCGTATTGTACAGAGGGAACGAATATTCCTCC-AGCATCAAACC 593
BSNT_03416___ 594 GTGGATTCTGCCGGAATTTGAAGCC-----CTCGTCAGAAACGGTACAAT 638
||||||.||.|||||||| || ||.||||...||||.|.|||
BL02225 594 GTGGATCCTTCCGGAATT-----CCTTTCGCTTGTCAAGCACGGAAAAAT 638
BSNT_03416___ 639 CCGTATGGAATTTGGCGCGTGT-GTCGAAAAAATCACTGAGGA-----TG 682
|.|.||||||||..|.||| || |||.||.||||.||.||.|| ||
BL02225 639 CAGAATGGAATTCCGGGCG-GTCGTCAAAGAAATTACGGAAGACGAGCTG 687
BSNT_03416___ 683 AAGTTGTGTATCGCTCCGGAGAGAAAGAACTCATTACC---ATTAAAAAT 729
|..||.|.|.||| .|||| |||||| ||| ||.||||||
BL02225 688 ATTTTTTCTGTCG--ACGGA---AAAGAA------ACCAGGATCAAAAAT 726
BSNT_03416___ 730 GATTTTGTATTTGCCATGACAGGCTATCATCCCGATCATCAATTTCTTGA 779
||||||||||||||||||||.|||||||||||.||||||...||||||.|
BL02225 727 GATTTTGTATTTGCCATGACCGGCTATCATCCAGATCATAGCTTTCTTCA 776
BSNT_03416___ 780 AAAAATTGGTGTTGAAATTGATAAAGAAACAGGGCGTCCATATTTCAACG 829
||||||.||.||..||||.||...|||..|.||.|||||.|..||.||.|
BL02225 777 AAAAATGGGAGTCAAAATCGACGCAGAGTCGGGCCGTCCTTTCTTTAATG 826
BSNT_03416___ 830 AAGAAACGATGGAAACGAACGTTGAAGGTGTCTTTATTGCCGGGGTTATT 879
|||||||||||||.|||||||..|||||..|||||||.|||||.||||||
BL02225 827 AAGAAACGATGGAGACGAACGAAGAAGGCATCTTTATCGCCGGCGTTATT 876
BSNT_03416___ 880 GCTGCGGGAAACAATGCAAATGAAATATTTATTGAAAACGGCAGGTTTCA 929
||.||.||.|||||.|||||||||||.|||||||||||||||.|.|||||
BL02225 877 GCGGCCGGGAACAACGCAAATGAAATCTTTATTGAAAACGGCCGTTTTCA 926
BSNT_03416___ 930 CGGGGGGCAT-ATCGCAGCGGAAATCGCCAAAAGAGAAAACCATTAA 975
| ||.|||.| ||||||||.|||||.||.|||.| ||.| |||
BL02225 927 C-GGCGGCTTAATCGCAGCTGAAATTGCTAAACG-GATA-----TAA 966
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