Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03414 and BL02223
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:22
# Commandline: needle
# -asequence dna-align/BSNT_03414___ypdC.1.5803.seq
# -bsequence dna-align/BL02223___ypdC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03414___ypdC-BL02223___ypdC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03414___ypdC-BL02223___ypdC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03414___ypdC
# 2: BL02223___ypdC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 705
# Identity: 481/705 (68.2%)
# Similarity: 481/705 (68.2%)
# Gaps: 84/705 (11.9%)
# Score: 1546.5
#
#
#=======================================
BSNT_03414___ 1 ATGTTTGCAATCATCTCTGCAGGAATTGCCCCCGGCATCGCGTTATTAAG 50
|||||.|.|||.|||||.|||||..|.||.|||||.|||||..|.||||.
BL02223___ypd 1 ATGTTCGGAATTATCTCAGCAGGCCTAGCTCCCGGAATCGCACTGTTAAT 50
BSNT_03414___ 51 TTATTTTTATTTAAAAGATCAGTATGATAAT--GAACCTGTACATATGGT 98
.||||||||.|||||.||..|.|||| ||| ||.||..|.||||||||
BL02223___ypd 51 GTATTTTTACTTAAAGGAAAAATATG--AATCCGAGCCCATTCATATGGT 98
BSNT_03414___ 99 -----GCTTCGGTCGTTTTTTCTCGGGGTTGTTCTTGTATTTCCCATCAT 143
||.|| |||.|.||.||||||.|.||.||.|||||.|..||
BL02223___ypd 99 CATCCGCCTC-----TTTATACTGGGGGTTTTGCTCGTTTTTCCGACGAT 143
BSNT_03414___ 144 GTTTATCCAGTATGTACTTGAAAAAGAGA---ATGTAGGAGGCGGAAGTT 190
|||.||||||||||||.|.|||||||| | ||.|..||| ||.||||
BL02223___ypd 144 GTTCATCCAGTATGTATTGGAAAAAGA-ACACATTTCTGAG--GGCAGTT 190
BSNT_03414___ 191 TTTTCGTTTCTTTTTTATCCTCGGGGTTTTTGGAGGAATCATTAAAATGG 240
||.|||||||.||||||.|.||.||.||||||||.||||..|||||||||
BL02223___ypd 191 TTGTCGTTTCGTTTTTAACTTCCGGCTTTTTGGAAGAATTTTTAAAATGG 240
BSNT_03414___ 241 TTTATACTGATGATCAG--TGTTTACCCGCACGCCCACTTTGATGAGCAT 288
|||.|.||||||.|||| ..||| |.|||...|.||||||||||.||.
BL02223___ypd 241 TTTTTGCTGATGGTCAGCACCTTT--CAGCATATCGACTTTGATGAACAC 288
BSNT_03414___ 289 TATGACGGGATTGTGTACGGTACAAGTGTATCACTCGGTTTTGCAACCCT 338
||||||||.||.||.|||||.|||||..|.|||.|.||.|||||.||.||
BL02223___ypd 289 TATGACGGAATCGTATACGGGACAAGCCTTTCATTGGGGTTTGCGACGCT 338
BSNT_03414___ 339 CGAAAATATTCTTTATTTAATTGGCCACGGCGTAGAGCATGCGTTTGTCA 388
.||||||||..|.||..|.||.||..||||.||.|||.|.||.|||.|
BL02223___ypd 339 TGAAAATATATTGTACCTCATCGGAAACGGGGTGGAGTACGCCTTTAT-- 386
BSNT_03414___ 389 GGGCGC--TGCTGCCTGTTTCATGCCATGCCTTGATT-GGCGTTATAATG 435
|.|||| ||||.||.|||||..|||||| |||.||| ||.||.||.|||
BL02223___ypd 387 GCGCGCTTTGCTTCCGGTTTCCAGCCATG-CTTTATTCGGAGTGATCATG 435
BSNT_03414___ 436 GGATTTTACCTTGGAAAAGCCCGTTTTTCCGCTGATAAGGCGCGTGTAAA 485
||.||||||.|.||.||||||||||||||.|.|...||..| |||
BL02223___ypd 436 GGCTTTTACATCGGCAAAGCCCGTTTTTCGGATAGCAAAAC------AAA 479
BSNT_03414___ 486 G------TGGCT--TACTCTTTCTTTAGTTGTCCCATCC--CTTT--TGC 523
| ||||| ||..||..|||| ||.| ||| |||| |.|
BL02223___ypd 480 GATGAAATGGCTGCTATGCTCGCTTT--TTAT----TCCGGCTTTGCTTC 523
BSNT_03414___ 524 ATGGATC-ATATGATTTTATCCTAACAGCGC----TTAGCAATTGGATTT 568
|.|| || |||.||||.|||.|| ||.| |.|..||.|||||.|
BL02223___ypd 524 ACGG-TCTATACGATTATATTCT----GCTCGCCTTAAAAAACTGGATCT 568
BSNT_03414___ 569 ATTATATGCTTCCATTTATGGTATTTTTATGGTGGTTTGGTTTGCGTAAA 618
|||.||||||.||.|||||||..|||.|.||||||||.||.|||||.|||
BL02223___ypd 569 ATTTTATGCTGCCCTTTATGGCGTTTCTTTGGTGGTTCGGCTTGCGCAAA 618
BSNT_03414___ 619 GCGAAAAAAGCCCGTTCCGTTAATA----------------TGATGCAAG 652
||.|||||||||||||||||.||.| |.| |||
BL02223___ypd 619 GCAAAAAAAGCCCGTTCCGTCAAAACCGGCGGGCAGCCTCTTCA-GCA-- 665
BSNT_03414___ 653 TATAG 657
||||
BL02223___ypd 666 -ATAG 669
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