Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03405 and BL02219
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:21
# Commandline: needle
# -asequence dna-align/BSNT_03405___cmk.1.5803.seq
# -bsequence dna-align/BL02219___cmk.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03405___cmk-BL02219___cmk.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03405___cmk-BL02219___cmk.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03405___cmk
# 2: BL02219___cmk
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 721
# Identity: 493/721 (68.4%)
# Similarity: 493/721 (68.4%)
# Gaps: 86/721 (11.9%)
# Score: 1658.0
#
#
#=======================================
BSNT_03405___ 1 ATGGAAAAGAAATTATCGATTGCAATTGACGGCCCGGCAGCTGCGGGGAA 50
||||||||||||||||..||||||||.||||||||.||.||.||.||.||
BL02219___cmk 1 ATGGAAAAGAAATTATGCATTGCAATAGACGGCCCTGCGGCAGCCGGAAA 50
BSNT_03405___ 51 AAGCACCGTTGCCAAAATTGTGGCTGAGAAAAAA-TCGTACATATATATT 99
|||||||||.||.|||||.||||| .|||||||| |||||.||.||||||
BL02219___cmk 51 AAGCACCGTGGCGAAAATCGTGGC-CAGAAAAAAGTCGTATATTTATATT 99
BSNT_03405___ 100 GATACAGGAGCAATGTATCGGGCGATTACGTACGCGGCTTTA---CAGGA 146
|||||.||.||.|||||..||||||||||||| |.|| |.|||
BL02219___cmk 100 GATACGGGTGCCATGTACAGGGCGATTACGTA------TCTAGCGCTGGA 143
BSNT_03405___ 147 AAA---CGTTGATCTGACAGATGAAGAAAAACTG-GCTGA--GC--TGCT 188
||| |||||||.|.|..||.|||| |.| ||||| || ||.|
BL02219___cmk 144 AAAGGGCGTTGATTTAAACGACGAAG-----CGGCGCTGACGGCCTTGTT 188
BSNT_03405___ 189 AAAGCGGACAGA------CATTGAGCTAA---TTACAACAAAAGATGGAC 229
||| ||| |||.||.||.| ||.|..|..|||..|..|
BL02219___cmk 189 AAA------AGAATCTGCCATCGATCTCACGGTTTCGCCTGAAGGAGAGC 232
BSNT_03405___ 230 AAAAAGTGCTTGTA----AACGGCACAGATGTAACTGAGGCGATCAGAAC 275
|.||.|| ||.|| | |||..|||||||||.|||||||||.|.||
BL02219___cmk 233 AGAAGGT--TTATATCGCA--GGCGAAGATGTAACAGAGGCGATCCGCAC 278
BSNT_03405___ 276 AGATGAAGTCAGCAACCAAGTTTCAATTGCGGCCAAGCACAGAAGTG-TC 324
.|||...||.|||||||||||.||.||.|..|||||..|| |..|.| ||
BL02219___cmk 279 GGATAGCGTGAGCAACCAAGTCTCCATCGTCGCCAAATAC-GCCGGGATC 327
BSNT_03405___ 325 AGAGAAGAAATGGTGAAACGCCAGCAGCAGCTTGGGGAAAAAGGCGGCGT 374
.|.|||||||||..||||.|.|||||||||||.|..|||||||||||.||
BL02219___cmk 328 CGCGAAGAAATGACGAAAAGGCAGCAGCAGCTGGCTGAAAAAGGCGGAGT 377
BSNT_03405___ 375 CGTCATGGATGGTCGTGACATCGGGACGCATGTGCTGCCAAATGCAGAAG 424
|||||||||.||.||.||||||||.||.||.||.||.||.|||||.||||
BL02219___cmk 378 CGTCATGGACGGCCGCGACATCGGAACCCACGTTCTCCCGAATGCGGAAG 427
BSNT_03405___ 425 TAAAAATCTTTCTTTTGGCATCTGTTGAAGAGAGAGCGAAACGCCGTTAT 474
|.|||||.|||||.|||||.||.||.||.|||.|.||.||||||||.|.|
BL02219___cmk 428 TGAAAATATTTCTCTTGGCGTCCGTCGAGGAGCGGGCAAAACGCCGCTTT 477
BSNT_03405___ 475 GAAGAAAATGTGAAAAAAGGCTTTGATGTCAACTACGAAACATTAATTGA 524
||||||||.||.||||||||.|...||||.||.||.|||||
BL02219___cmk 478 GAAGAAAACGTCAAAAAAGGGTACAATGTAAATTATGAAAC--------- 518
BSNT_03405___ 525 GGAAATTGCAAGAAGA-------------GACAAGCTTGATTCAGAGCGC 561
..|||| |||||| |||||.||.||||||||||||
BL02219___cmk 519 ---GCTTGC-AGAAGAAATCAGGCGCCGTGACAAACTCGATTCAGAGCGC 564
BSNT_03405___ 562 GAAGTATCTCCGCTGCGTAAAGCAGAAGACGCTCTTGAAATCGACACGAC 611
||..|.||.|||.||...|||||.||.||.||.|||||||||||||||||
BL02219___cmk 565 GAGATTTCCCCGTTGAAAAAAGCGGACGATGCGCTTGAAATCGACACGAC 614
BSNT_03405___ 612 ATCGCTTTCCATTCAAGAGGTAGCTGATAAAATCCTCGAGGCTGTGGAGC 661
.||..|..|.||..|.||.||.||.||.|||||.||..||..|||.||..
BL02219___cmk 615 TTCATTGACGATCGATGAAGTGGCCGAAAAAATTCTGCAGATTGTAGACA 664
BSNT_03405___ 662 AAAAGTCCCGCTGA------- 675
||||| |||.|
BL02219___cmk 665 AAAAG----GCTCAAAAATAA 681
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