Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03404 and BL02218
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:21
# Commandline: needle
# -asequence dna-align/BSNT_03404___rpsA.1.5803.seq
# -bsequence dna-align/BL02218___rpsA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03404___rpsA-BL02218___rpsA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03404___rpsA-BL02218___rpsA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03404___rpsA
# 2: BL02218___rpsA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1166
# Identity: 948/1166 (81.3%)
# Similarity: 948/1166 (81.3%)
# Gaps: 34/1166 ( 2.9%)
# Score: 3806.5
#
#
#=======================================
BSNT_03404___ 1 ATGACAGAGGAAATGAATCAAATTGATGTTCAAGTGCCAGAGGTTGGAGA 50
|||||||||||||||||||||||||||||||||||.||||||||||||||
BL02218___rps 1 ATGACAGAGGAAATGAATCAAATTGATGTTCAAGTACCAGAGGTTGGAGA 50
BSNT_03404___ 51 TGTAGTTAAAGGGATTGTGACAAAGGTAGAAGACAAACATGTAGATGTAG 100
|||.||.|||||.|||||.||.||.||.||.|||||.|||||.|||||.|
BL02218___rps 51 TGTGGTGAAAGGTATTGTAACGAAAGTTGAGGACAAGCATGTCGATGTTG 100
BSNT_03404___ 101 AAATTATCAA-TGTCAAACAATCCGGTATTATTCCAATCAGTGAATTATC 149
|.||...||| || |||.|||.||||.|||||.|||||||||||||||||
BL02218___rps 101 ACATCCCCAACTG-CAAGCAAACCGGAATTATCCCAATCAGTGAATTATC 149
BSNT_03404___ 150 AAGTCTTCATGTAGAGAAAGCATCGGATGTTGTTAAAGTAGACGACGAGC 199
||||||||||||.||.||||||||.|||||.||.||.||.|||||.||||
BL02218___rps 150 AAGTCTTCATGTTGAAAAAGCATCAGATGTCGTCAATGTTGACGATGAGC 199
BSNT_03404___ 200 TTGACCTGAAAGTAACAAAAGTGGAAGACGATGCTTTGATTTTATCTAAA 249
||||..|.|||||.||||||||||||||||||||.|||||||||||.|||
BL02218___rps 200 TTGAATTAAAAGTGACAAAAGTGGAAGACGATGCATTGATTTTATCAAAA 249
BSNT_03404___ 250 CGTGCTGTTGATGCAGACCGCGCTTGGGAAGACCTTGAGAAAAAATTTGA 299
|||||||||||||||||||||||||||||||||||.||||||||.|||||
BL02218___rps 250 CGTGCTGTTGATGCAGACCGCGCTTGGGAAGACCTAGAGAAAAAGTTTGA 299
BSNT_03404___ 300 AACAAAAGAAGTGTTTGAAGCTGAAGTGAAAGATGTCGTGAAAGGCGGCC 349
..|||||||||||||||||||.|||||.|||||.|||||.||||||||.|
BL02218___rps 300 GTCAAAAGAAGTGTTTGAAGCCGAAGTAAAAGACGTCGTTAAAGGCGGTC 349
BSNT_03404___ 350 TTGTCGTTGATATCGGCGTTCGCGGTTTTATTCCGGCATCGCTTGTTGAA 399
|.|||||.|||||||||||.|||||.||.|||||.|||||||||||.||.
BL02218___rps 350 TGGTCGTCGATATCGGCGTGCGCGGATTCATTCCCGCATCGCTTGTAGAG 399
BSNT_03404___ 400 GCACATTTCGTTGAAGACTTCACTGACTATAAAGGAAAAAC----ACTGT 445
||.|||||.||.|||||.||.||.||.|||||||||||.|| |||.|
BL02218___rps 400 GCGCATTTTGTCGAAGATTTTACAGATTATAAAGGAAAGACGCTTACTTT 449
BSNT_03404___ 446 CACTGCTCGTTGTAGAGCTTGACCGTGATAAAAACCGCGTGATCCTTTCA 495
.| ||||.||.||.||||||.|.|||||||||||||||||..|.|||
BL02218___rps 450 AA----TCGTCGTTGAACTTGACAGAGATAAAAACCGCGTGATTTTATCA 495
BSNT_03404___ 496 CACCGTGCTGTTGTTGAAAGTGAACAAGC-GAATAAAAAACAAGAACTTC 544
||||||||.|||||.||||..||.||..| ||| |.||||||||||.|||
BL02218___rps 496 CACCGTGCGGTTGTAGAAAAAGAGCAGTCAGAA-AGAAAACAAGAATTTC 544
BSNT_03404___ 545 TTCAGTCTCTTGAAGTTGG-GAGTGTACTTGATGGCAAAGTACAGCGCCT 593
||||..|.||.||||..|| .|| ||.|||||.||.||||||||||||||
BL02218___rps 545 TTCAAACGCTGGAAGCCGGACAG-GTGCTTGAAGGAAAAGTACAGCGCCT 593
BSNT_03404___ 594 GACTGATTTTGGCGCGTTTGTTGATATCGGCGGCATCGACGGACTTGTAC 643
|||.||.||.||.||.||.|||||.|||||||||||.|||||.|||||.|
BL02218___rps 594 GACAGACTTCGGTGCTTTCGTTGACATCGGCGGCATTGACGGTCTTGTTC 643
BSNT_03404___ 644 ACATTTCACAGCTTTCCCACTCTCATGTAGAGAAACCGTCTGACGTTGTT 693
||||.||.|||||.||.||.||.||.||.||.||||||||.|||||.||.
BL02218___rps 644 ACATCTCCCAGCTCTCGCATTCACACGTTGAAAAACCGTCGGACGTCGTC 693
BSNT_03404___ 694 GAAGAGGGACAAGAAGTAAAAGTGAAAGTGTTATCGGTTGACCGTGACAA 743
|||||.||.||.||.||.|||||.||||||.|.||.||.|||||.|||||
BL02218___rps 694 GAAGAAGGCCAGGATGTCAAAGTCAAAGTGCTGTCCGTCGACCGCGACAA 743
BSNT_03404___ 744 TGAACGTATTTCTTTATCAATCAAAGATACACTGCCTGGACCTTGGAGCC 793
||||||.|||||..||||.||||||||.||.||.|||||||||||| .||
BL02218___rps 744 TGAACGAATTTCGCTATCGATCAAAGAAACGCTTCCTGGACCTTGG-TCC 792
BSNT_03404___ 794 AA-ATCGGCGAAAAAGTGAAGCCTGGCGATGTGCTTGAAGGAACTGTACA 842
|| |||||.|||||.|||||||||||.||.||..|.||.||||..||.||
BL02218___rps 793 AACATCGGTGAAAAGGTGAAGCCTGGAGACGTATTGGACGGAAAAGTTCA 842
BSNT_03404___ 843 GCGTCTT-GTAAGCTTCGGTGCCTTTGTTGAAATCCTTCCAGGTGTTGAA 891
||| ||| ||.|||||||||||.|||||.|||.|.|||||.||.||||||
BL02218___rps 843 GCG-CTTGGTGAGCTTCGGTGCATTTGTCGAAGTGCTTCCTGGAGTTGAA 891
BSNT_03404___ 892 GGTCTCGTTCATATTTCTCAAATTTCCAATAAACACATCGGCACGCCGCA 941
||.|||||.||.|||||.|||||.|||||.|||||||||||.|||||.||
BL02218___rps 892 GGCCTCGTCCACATTTCGCAAATCTCCAACAAACACATCGGAACGCCTCA 941
BSNT_03404___ 942 TGAAGTCCTTGAAGAAGGACA-GACTGTAAAAGTGAAGGTTCTTGATGTG 990
||||||.|||||.|||||.|| ||| |||||||||||.||.||||||||.
BL02218___rps 942 TGAAGTGCTTGAGGAAGGCCAGGAC-GTAAAAGTGAAAGTGCTTGATGTC 990
BSNT_03404___ 991 AATGAAAATGAGGAGCGCATTTCATTAAGCATGCGTGAACTTGAAG-AAA 1039
||||||.|.||.|||||||||||.|||||||||...||.||||||| |||
BL02218___rps 991 AATGAAGAGGAAGAGCGCATTTCTTTAAGCATGAAAGAGCTTGAAGAAAA 1040
BSNT_03404___ 1040 CGCC--TAAAGCTGATCAGGAAGATTACCGTCAATATCAAGCGAAGGAAG 1087
|.|| ||||||.||.|||||||||||||||||.||.||.||||||||||
BL02218___rps 1041 CACCGATAAAGCAGAGCAGGAAGATTACCGTCAGTACCAGGCGAAGGAAG 1090
BSNT_03404___ 1088 AAACAAG----CACTGGCTTCCAGCTTGGAGATCTGATCGGAGATAAGCT 1133
|| || ||.||||||||.||.||..||||||||||.||.||
BL02218___rps 1091 -----AGTCTTCA--GGGTTCCAGCTCGGTGAAATGATCGGAGACAAACT 1133
BSNT_03404___ 1134 GAATAAACTAAAATAA 1149
|||||||.||||.|||
BL02218___rps 1134 GAATAAATTAAAGTAA 1149
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