Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03404 and BL02218

See Amino acid alignment / Visit BSNT_03404 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:21
# Commandline: needle
#    -asequence dna-align/BSNT_03404___rpsA.1.5803.seq
#    -bsequence dna-align/BL02218___rpsA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03404___rpsA-BL02218___rpsA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03404___rpsA-BL02218___rpsA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03404___rpsA
# 2: BL02218___rpsA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1166
# Identity:     948/1166 (81.3%)
# Similarity:   948/1166 (81.3%)
# Gaps:          34/1166 ( 2.9%)
# Score: 3806.5
# 
#
#=======================================

BSNT_03404___      1 ATGACAGAGGAAATGAATCAAATTGATGTTCAAGTGCCAGAGGTTGGAGA     50
                     |||||||||||||||||||||||||||||||||||.||||||||||||||
BL02218___rps      1 ATGACAGAGGAAATGAATCAAATTGATGTTCAAGTACCAGAGGTTGGAGA     50

BSNT_03404___     51 TGTAGTTAAAGGGATTGTGACAAAGGTAGAAGACAAACATGTAGATGTAG    100
                     |||.||.|||||.|||||.||.||.||.||.|||||.|||||.|||||.|
BL02218___rps     51 TGTGGTGAAAGGTATTGTAACGAAAGTTGAGGACAAGCATGTCGATGTTG    100

BSNT_03404___    101 AAATTATCAA-TGTCAAACAATCCGGTATTATTCCAATCAGTGAATTATC    149
                     |.||...||| || |||.|||.||||.|||||.|||||||||||||||||
BL02218___rps    101 ACATCCCCAACTG-CAAGCAAACCGGAATTATCCCAATCAGTGAATTATC    149

BSNT_03404___    150 AAGTCTTCATGTAGAGAAAGCATCGGATGTTGTTAAAGTAGACGACGAGC    199
                     ||||||||||||.||.||||||||.|||||.||.||.||.|||||.||||
BL02218___rps    150 AAGTCTTCATGTTGAAAAAGCATCAGATGTCGTCAATGTTGACGATGAGC    199

BSNT_03404___    200 TTGACCTGAAAGTAACAAAAGTGGAAGACGATGCTTTGATTTTATCTAAA    249
                     ||||..|.|||||.||||||||||||||||||||.|||||||||||.|||
BL02218___rps    200 TTGAATTAAAAGTGACAAAAGTGGAAGACGATGCATTGATTTTATCAAAA    249

BSNT_03404___    250 CGTGCTGTTGATGCAGACCGCGCTTGGGAAGACCTTGAGAAAAAATTTGA    299
                     |||||||||||||||||||||||||||||||||||.||||||||.|||||
BL02218___rps    250 CGTGCTGTTGATGCAGACCGCGCTTGGGAAGACCTAGAGAAAAAGTTTGA    299

BSNT_03404___    300 AACAAAAGAAGTGTTTGAAGCTGAAGTGAAAGATGTCGTGAAAGGCGGCC    349
                     ..|||||||||||||||||||.|||||.|||||.|||||.||||||||.|
BL02218___rps    300 GTCAAAAGAAGTGTTTGAAGCCGAAGTAAAAGACGTCGTTAAAGGCGGTC    349

BSNT_03404___    350 TTGTCGTTGATATCGGCGTTCGCGGTTTTATTCCGGCATCGCTTGTTGAA    399
                     |.|||||.|||||||||||.|||||.||.|||||.|||||||||||.||.
BL02218___rps    350 TGGTCGTCGATATCGGCGTGCGCGGATTCATTCCCGCATCGCTTGTAGAG    399

BSNT_03404___    400 GCACATTTCGTTGAAGACTTCACTGACTATAAAGGAAAAAC----ACTGT    445
                     ||.|||||.||.|||||.||.||.||.|||||||||||.||    |||.|
BL02218___rps    400 GCGCATTTTGTCGAAGATTTTACAGATTATAAAGGAAAGACGCTTACTTT    449

BSNT_03404___    446 CACTGCTCGTTGTAGAGCTTGACCGTGATAAAAACCGCGTGATCCTTTCA    495
                     .|    ||||.||.||.||||||.|.|||||||||||||||||..|.|||
BL02218___rps    450 AA----TCGTCGTTGAACTTGACAGAGATAAAAACCGCGTGATTTTATCA    495

BSNT_03404___    496 CACCGTGCTGTTGTTGAAAGTGAACAAGC-GAATAAAAAACAAGAACTTC    544
                     ||||||||.|||||.||||..||.||..| ||| |.||||||||||.|||
BL02218___rps    496 CACCGTGCGGTTGTAGAAAAAGAGCAGTCAGAA-AGAAAACAAGAATTTC    544

BSNT_03404___    545 TTCAGTCTCTTGAAGTTGG-GAGTGTACTTGATGGCAAAGTACAGCGCCT    593
                     ||||..|.||.||||..|| .|| ||.|||||.||.||||||||||||||
BL02218___rps    545 TTCAAACGCTGGAAGCCGGACAG-GTGCTTGAAGGAAAAGTACAGCGCCT    593

BSNT_03404___    594 GACTGATTTTGGCGCGTTTGTTGATATCGGCGGCATCGACGGACTTGTAC    643
                     |||.||.||.||.||.||.|||||.|||||||||||.|||||.|||||.|
BL02218___rps    594 GACAGACTTCGGTGCTTTCGTTGACATCGGCGGCATTGACGGTCTTGTTC    643

BSNT_03404___    644 ACATTTCACAGCTTTCCCACTCTCATGTAGAGAAACCGTCTGACGTTGTT    693
                     ||||.||.|||||.||.||.||.||.||.||.||||||||.|||||.||.
BL02218___rps    644 ACATCTCCCAGCTCTCGCATTCACACGTTGAAAAACCGTCGGACGTCGTC    693

BSNT_03404___    694 GAAGAGGGACAAGAAGTAAAAGTGAAAGTGTTATCGGTTGACCGTGACAA    743
                     |||||.||.||.||.||.|||||.||||||.|.||.||.|||||.|||||
BL02218___rps    694 GAAGAAGGCCAGGATGTCAAAGTCAAAGTGCTGTCCGTCGACCGCGACAA    743

BSNT_03404___    744 TGAACGTATTTCTTTATCAATCAAAGATACACTGCCTGGACCTTGGAGCC    793
                     ||||||.|||||..||||.||||||||.||.||.|||||||||||| .||
BL02218___rps    744 TGAACGAATTTCGCTATCGATCAAAGAAACGCTTCCTGGACCTTGG-TCC    792

BSNT_03404___    794 AA-ATCGGCGAAAAAGTGAAGCCTGGCGATGTGCTTGAAGGAACTGTACA    842
                     || |||||.|||||.|||||||||||.||.||..|.||.||||..||.||
BL02218___rps    793 AACATCGGTGAAAAGGTGAAGCCTGGAGACGTATTGGACGGAAAAGTTCA    842

BSNT_03404___    843 GCGTCTT-GTAAGCTTCGGTGCCTTTGTTGAAATCCTTCCAGGTGTTGAA    891
                     ||| ||| ||.|||||||||||.|||||.|||.|.|||||.||.||||||
BL02218___rps    843 GCG-CTTGGTGAGCTTCGGTGCATTTGTCGAAGTGCTTCCTGGAGTTGAA    891

BSNT_03404___    892 GGTCTCGTTCATATTTCTCAAATTTCCAATAAACACATCGGCACGCCGCA    941
                     ||.|||||.||.|||||.|||||.|||||.|||||||||||.|||||.||
BL02218___rps    892 GGCCTCGTCCACATTTCGCAAATCTCCAACAAACACATCGGAACGCCTCA    941

BSNT_03404___    942 TGAAGTCCTTGAAGAAGGACA-GACTGTAAAAGTGAAGGTTCTTGATGTG    990
                     ||||||.|||||.|||||.|| ||| |||||||||||.||.||||||||.
BL02218___rps    942 TGAAGTGCTTGAGGAAGGCCAGGAC-GTAAAAGTGAAAGTGCTTGATGTC    990

BSNT_03404___    991 AATGAAAATGAGGAGCGCATTTCATTAAGCATGCGTGAACTTGAAG-AAA   1039
                     ||||||.|.||.|||||||||||.|||||||||...||.||||||| |||
BL02218___rps    991 AATGAAGAGGAAGAGCGCATTTCTTTAAGCATGAAAGAGCTTGAAGAAAA   1040

BSNT_03404___   1040 CGCC--TAAAGCTGATCAGGAAGATTACCGTCAATATCAAGCGAAGGAAG   1087
                     |.||  ||||||.||.|||||||||||||||||.||.||.||||||||||
BL02218___rps   1041 CACCGATAAAGCAGAGCAGGAAGATTACCGTCAGTACCAGGCGAAGGAAG   1090

BSNT_03404___   1088 AAACAAG----CACTGGCTTCCAGCTTGGAGATCTGATCGGAGATAAGCT   1133
                          ||    ||  ||.||||||||.||.||..||||||||||.||.||
BL02218___rps   1091 -----AGTCTTCA--GGGTTCCAGCTCGGTGAAATGATCGGAGACAAACT   1133

BSNT_03404___   1134 GAATAAACTAAAATAA   1149
                     |||||||.||||.|||
BL02218___rps   1134 GAATAAATTAAAGTAA   1149


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