Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00786 and BL02197
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:25
# Commandline: needle
# -asequence dna-align/BSNT_00786___ydbR.1.5803.seq
# -bsequence dna-align/BL02197___ydbR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00786___ydbR-BL02197___ydbR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00786___ydbR-BL02197___ydbR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00786___ydbR
# 2: BL02197___ydbR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1507
# Identity: 1196/1507 (79.4%)
# Similarity: 1196/1507 (79.4%)
# Gaps: 65/1507 ( 4.3%)
# Score: 4815.0
#
#
#=======================================
BSNT_00786___ 1 TTGACTATAACGTTTCAAGATTTTAATTTAAGTTCTGATCTCATGAAAGC 50
|||||.||||||||||||||||||.|.||||||||||||||||..|||||
BL02197___ydb 1 TTGACAATAACGTTTCAAGATTTTCAATTAAGTTCTGATCTCACAAAAGC 50
BSNT_00786___ 51 AATTAATCGTATGGGATTTGAAGAAGCAACACCGATTCAGGCACAAACGA 100
|||.||.|||||||||||||||||.|||||||||||||||||||||||||
BL02197___ydb 51 AATCAAGCGTATGGGATTTGAAGAGGCAACACCGATTCAGGCACAAACGA 100
BSNT_00786___ 101 TACCGCTCGGACTTTCAAATAAAGACGTCATTGGACAAGCGCAAACAGGT 150
|.||.|||||.|||.||||||||||.||.||.||||||||||||||.||.
BL02197___ydb 101 TTCCACTCGGCCTTGCAAATAAAGATGTGATCGGACAAGCGCAAACGGGA 150
BSNT_00786___ 151 ACAGGTAAAACAGCTGCGTTTGGTATACCCCTTGTTGAAAAAATTAACCC 200
|||||.|||||.|||||.|||||.||.|||||||||||.|||||.|||||
BL02197___ydb 151 ACAGGAAAAACGGCTGCATTTGGCATCCCCCTTGTTGAGAAAATCAACCC 200
BSNT_00786___ 201 CGAGTCTCCTAATATTCAAGCAATCGTAATCGCGCCAACCCGTGAATTAG 250
||||||||||||.||||||||.||.||.|||||.||.||.||||||.|||
BL02197___ydb 201 CGAGTCTCCTAACATTCAAGCCATTGTTATCGCACCTACTCGTGAACTAG 250
BSNT_00786___ 251 CCATTCAAGTATCTGAAGAATTGTATAAAATCGGACAAGATAAACGTGCG 300
||||||||||.||||||||..|.||||||||.|||||.||||||||.||.
BL02197___ydb 251 CCATTCAAGTTTCTGAAGAGCTATATAAAATTGGACAGGATAAACGCGCT 300
BSNT_00786___ 301 AAGGTTCTTCCTATTTACGGCGGACAGGATATTGGACGGCAAATCCGGGC 350
...||.||.||.||||||||.|||||||||||.|||||.||.||.||.||
BL02197___ydb 301 CGCGTGCTGCCGATTTACGGAGGACAGGATATCGGACGCCAGATTCGCGC 350
BSNT_00786___ 351 GTTAAAGAAGAATCCGAATATTATTGTCGGAACACCTGGACGTCTTCTTG 400
|.|.|||||.||.||..|||||||.|||||.||||||||.|||||.||||
BL02197___ydb 351 GCTTAAGAAAAACCCTCATATTATCGTCGGCACACCTGGTCGTCTGCTTG 400
BSNT_00786___ 401 ACCACATCAATCGCCGCACCATTCG--TTTAAACAATGTAAATACTGTTG 448
||||.|||||.||||||||.||.|| ||.||||| ||.||.||.||||
BL02197___ydb 401 ACCATATCAACCGCCGCACAATGCGTCTTCAAACA--GTGAACACCGTTG 448
BSNT_00786___ 449 TAATGGATGAAGCGGATGAAATGCTGAACATGGGATTCATTGATGATATT 498
|..|.|||||||||||||||||||||||||||||||||||.||.|||||.
BL02197___ydb 449 TGCTTGATGAAGCGGATGAAATGCTGAACATGGGATTCATCGAAGATATC 498
BSNT_00786___ 499 GAATCTATCCTTTCAAACGTGCCAAGC-GAGCATCAGACACTTCTGTTCT 547
|||||.||||||||.||.||||| .|| ||.||.||||||.|.|||||.|
BL02197___ydb 499 GAATCCATCCTTTCCAATGTGCC-TGCTGAACACCAGACATTGCTGTTTT 547
BSNT_00786___ 548 CTGCCACAATGCCTGCGCCGATCAAACGCATTGCAGAGCGCTTTATGACT 597
||||.|||||||||||.|||||.||.||.||||||||.||.||.|||||.
BL02197___ydb 548 CTGCAACAATGCCTGCTCCGATTAAGCGGATTGCAGAACGTTTCATGACC 597
BSNT_00786___ 598 GAGCCGGAACACGTAAAAGTAAAAGCGAAAGAAATGACGGTTTCTAACAT 647
.|.|||||.|||||||||||.|||||.|||||||||||.||.||.|||||
BL02197___ydb 598 AACCCGGAGCACGTAAAAGTGAAAGCAAAAGAAATGACAGTATCAAACAT 647
BSNT_00786___ 648 TCAGCAGTTCTATTTGGAAGTGCAAGAACGCAAAAAATTCGATACACTGA 697
.|||||||||||..|.|||||.||.|||||||||||.||.|||||.||||
BL02197___ydb 648 CCAGCAGTTCTACCTAGAAGTTCATGAACGCAAAAAGTTTGATACGCTGA 697
BSNT_00786___ 698 CTCGTCTTCTTGACATTCAGTCTCCTGAGCTTGCGATCGTATTCGGACGT 747
|.||.|||||||||||.||||||||.||..|.||||||||||||||.||.
BL02197___ydb 698 CACGCCTTCTTGACATCCAGTCTCCGGAATTGGCGATCGTATTCGGCCGG 747
BSNT_00786___ 748 ACAAAACGCCGTGTCGATGAACTGGCTGAAGCCCTGAACCTTCGCGGATA 797
|||||.||||||||||||||||||.|.|||||.||.||.||.|||||.||
BL02197___ydb 748 ACAAAGCGCCGTGTCGATGAACTGACAGAAGCGCTTAATCTGCGCGGGTA 797
BSNT_00786___ 798 TGCAGCTGAAGGAATTCACGGTGACTTAACGCAGGCGAAACGTATGGTTG 847
|.|||||||||||||||||||.||.||.||.||||||||.||.|||||||
BL02197___ydb 798 TACAGCTGAAGGAATTCACGGAGATTTGACCCAGGCGAAGCGGATGGTTG 847
BSNT_00786___ 848 CGCTTCGTAAATTTAAAGAAGGCGCAATCGAAGTTCTTGTCGCAACTGAT 897
|.||.||.||||||||..|||||||.||.|||||.||.||.||.||.||.
BL02197___ydb 848 CACTCCGGAAATTTAAGCAAGGCGCGATTGAAGTGCTCGTTGCGACAGAC 897
BSNT_00786___ 898 GTTGCCGCTCGCGGACTTGATATCTCAGGTGTTACACACGTATACAACTT 947
|||||.||||||||.||||||||.||||||||.||.|||||.||||||||
BL02197___ydb 898 GTTGCGGCTCGCGGCCTTGATATTTCAGGTGTAACGCACGTCTACAACTT 947
BSNT_00786___ 948 CGACGTGCCTCAAGATCCTGAAAGCTACGTTCACCGTATCGGAAGAACGG 997
|||.|||||.|||||||||||.|||||.||||||||.|||||||||||||
BL02197___ydb 948 CGATGTGCCGCAAGATCCTGAGAGCTATGTTCACCGCATCGGAAGAACGG 997
BSNT_00786___ 998 GCCGTGCAGGAAAAACAGGTATGGCGATGACGTTCATTACACCGCGTGAG 1047
|.||.||.||.||||||||.|||||||||||.||||||||||||||| |
BL02197___ydb 998 GACGCGCGGGCAAAACAGGAATGGCGATGACCTTCATTACACCGCGT--G 1045
BSNT_00786___ 1048 AAAAG--CATGCTTCGCGCAATTGAACAAACAACAAAACGCAAAATGGAC 1095
||||| .|||||.|||||.||.||.||.||.||||||||||||||||||
BL02197___ydb 1046 AAAAGGATATGCTGCGCGCCATCGAGCAGACGACAAAACGCAAAATGGAC 1095
BSNT_00786___ 1096 CGCATGAAGGAGCCTACACTTGATGAAGCGTTAGAAGGCCAGCAACAGGT 1145
||||||||.|..||.||.||.|||||.||..|.|||||.|||||.|||||
BL02197___ydb 1096 CGCATGAAAGCACCGACTCTCGATGAGGCCATTGAAGGACAGCAGCAGGT 1145
BSNT_00786___ 1146 TACTGTTGAACGTCTTCGCACAACAATC-AGTGAAAACAACCTGAACTTC 1194
.||.|||||.||..|.||.||.|..||| || |||||.||||||||||||
BL02197___ydb 1146 GACGGTTGACCGCATCCGGACGATCATCGAG-GAAAATAACCTGAACTTC 1194
BSNT_00786___ 1195 TACATGACAGCGGCAGCTGAGCTGCTTGAAGATCATGATGCAGTAACAGT 1244
||.|||||.||.|||||.||..|..|.|||||.||||||.|.||.|||||
BL02197___ydb 1195 TATATGACGGCTGCAGCGGAATTATTGGAAGACCATGATTCTGTGACAGT 1244
BSNT_00786___ 1245 GGTTGCGGCGGCTATCAAAATGGCTACTAAAGAGCCAGACGACACACCGG 1294
.||||||||.||.||.||||||...|||||||||||.|||.|||||||.|
BL02197___ydb 1245 TGTTGCGGCTGCCATTAAAATGATGACTAAAGAGCCGGACAACACACCTG 1294
BSNT_00786___ 1295 TTCGCTTAACAGACGAAGCGCCGATGGTCAG---CAAACGCTACAAGA-- 1339
|.||.||.||.||.||.||.|| |.|||| .||.||..||||.|
BL02197___ydb 1295 TCCGTTTGACGGAAGAGGCTCC---GCTCAGAACGAAGCGAAACAAAAAT 1341
BSNT_00786___ 1340 ----ACCAGCGCTCTTCTAAACGCAGAGACGGTCAAGGCGGCGGCTACCG 1385
||||.||.||.||.|||||||||||| ||||||||||||
BL02197___ydb 1342 CACCACCACCGTTCATCAAAACGCAGAGAC------GGCGGCGGCTAC-- 1383
BSNT_00786___ 1386 CGGCGGAAAAGGGAAAAGCAACAACCGTTCTTCCTATGACAAAAAGCGTT 1435
||.|.|||| |||||.|||||.||.|||||.||||||
BL02197___ydb 1384 ---------AGAGGAAAG-AACAATCGTTCATCTTATGATAAAAAG---- 1419
BSNT_00786___ 1436 CAAACGATCGCCGTTCTTCAGGTGACAGACGCCAGAAAAAATCTTACTAA 1485
||||||||...||||||||||||.||||||||.|| |||
BL02197___ydb 1420 -----------CGTTCTTCGAATGACAGACGCCAAAAAAAATCATA-TAA 1457
BSNT_00786___ 1485 ------- 1485
BL02197___ydb 1458 TTCATAA 1464
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