Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04888 and BL02186
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:05
# Commandline: needle
# -asequence dna-align/BSNT_04888___yusW.1.5803.seq
# -bsequence dna-align/BL02186___yusW.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04888___yusW-BL02186___yusW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04888___yusW-BL02186___yusW.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04888___yusW
# 2: BL02186___yusW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 515
# Identity: 285/515 (55.3%)
# Similarity: 285/515 (55.3%)
# Gaps: 145/515 (28.2%)
# Score: 644.0
#
#
#=======================================
BSNT_04888___ 1 ----ATGCATTTGATCAGAGCAGCCGG--GGCTG-TAT--GTCTCGCAGT 41
||..|||| ||| |||.| ||| .|||||...|
BL02186___yus 1 ATGAATCAATTT------------CGGATGGCCGTTATCGCTCTCGTCCT 38
BSNT_04888___ 42 GGTTCTGATTGCGGGCTGCCGTTTCAAT----GAAGACCA-GCAGCAGGC 86
|.|.|||||..|.||||| ||..||.|| |||||.|| ||.|.||||
BL02186___yus 39 GATCCTGATGACCGGCTG-CGGCTCCATAGCGGAAGAACATGCGGAAGGC 87
BSNT_04888___ 87 AGAAGGAGAAAATACAGCCGTCACC----------------CAGCTG--- 117
|||||| |||||..|| |||.||
BL02186___yus 88 --AAGGAG--------GCCGTTCCCGATAACGCCCCTGTTTCAGATGTGA 127
BSNT_04888___ 118 -AAGTCCGTTCCCTA--CAGCAATTTTTCGCTTCG--TGTGAGCTACGGG 162
||| |||.||.|| |.||| ||.||.|.| .||||.|||.||.
BL02186___yus 128 AAAG--CGTGCCTTACGCTGCA----TTTGCATTGGAAGTGAACTATGGC 171
BSNT_04888___ 163 GATGGTGAGCATAA-CCGTTATGAAGGAATC--TATACAAAGAACGGAAC 209
.||||..||||.|| .|||| ||||| | |||||.|..||
BL02186___yus 172 CATGGAAAGCACAATACGTT-TGAAG----CCGTATACGACAAA------ 210
BSNT_04888___ 210 TCAGGAAAAAGCGGAAATACAGGAT------AAG-CTCTC----CGGTGT 248
|||| |||||.||.| ||.|| ||| ||.|| |||.|.
BL02186___yus 211 -CAGG----AGCGGGAAGA-AGCATCGATTAAAGACTATCTGAACGGAGC 254
BSNT_04888___ 249 CAATCAGGAGGGAGAAGAAGCATTGGATGAGATGAAAATGATTTTGAGCG 298
..|.|..||.||.||.|||||.||..|.||.|||||||||.||||.||||
BL02186___yus 255 GGACCGCGAAGGGGAGGAAGCTTTAAACGAAATGAAAATGGTTTTAAGCG 304
BSNT_04888___ 299 AGCTTTCCGTAACAGA---CCAAATGGCTGAAACA------GAAGTGATA 339
||||||| || |||||| |.||..|| ||.|||||
BL02186___yus 305 AGCTTTC-------GATCGCCAAAT--CCGATCCAGAGCAGGACGTGAT- 344
BSNT_04888___ 340 CA-CAGTGTGCTGGCAGCATTTAATCTGGACAGTCATTATGATCATATCG 388
|| ||.||||||.|..||.||.|||||.|||...||.|||| |.||
BL02186___yus 345 CAGCAATGTGCTCGAGGCCTTCAATCTTGACGAACAATATG-----ACCG 389
BSNT_04888___ 389 ATTTAAAAT-----TGAA----GCTGAAGG-ACGGCTCCATCAGAGAA-- 426
.|||.|..| |||| .||||.|| ||| ||| ||||
BL02186___yus 390 GTTTCAGCTGCGGGTGAAATGGCCTGATGGCACG--TCC-----AGAATC 432
BSNT_04888___ 427 -ATCAAG--AAGTAA 438
||.|.| ||.|||
BL02186___yus 433 TATAACGGAAAATAA 447
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