Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04858 and BL02172

See Amino acid alignment / Visit BSNT_04858 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:03
# Commandline: needle
#    -asequence dna-align/BSNT_04858___yusD.1.5803.seq
#    -bsequence dna-align/BL02172___yusD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04858___yusD-BL02172___yusD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04858___yusD-BL02172___yusD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04858___yusD
# 2: BL02172___yusD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 378
# Identity:     240/378 (63.5%)
# Similarity:   240/378 (63.5%)
# Gaps:          63/378 (16.7%)
# Score: 718.0
# 
#
#=======================================

BSNT_04858___      1 ATGGAGAAAGCGGAAGTTTTAG-AAGATGAGTATCAGCA----TCTGTTT     45
                     .||||||||..||.|.|..||| |||| |||    .|||    |||.|||
BL02172___yus      1 TTGGAGAAAATGGGATTGATAGAAAGA-GAG----GGCAAGGCTCTTTTT     45

BSNT_04858___     46 TTAAAACCCCTTTTGAATGCCT-CAA---CATTGCTCATTACCTTCCAAG     91
                     ||||||||.||.||  ||  || |||   |.|||||.|||||.||.||||
BL02172___yus     46 TTAAAACCTCTATT--AT--CTACAACGGCTTTGCTGATTACGTTTCAAG     91

BSNT_04858___     92 GAGAAGCAGAAGCCTTAACCGTCTCAATAAACGAACAGGGAGAAATGAAA    141
                     ||||...||||||.||.||..|..||||.||||||.|.||.||||||.||
BL02172___yus     92 GAGAGAAAGAAGCTTTTACGTTAGCAATCAACGAAAAAGGGGAAATGGAA    141

BSNT_04858___    142 AAAGTTTCTCC----GCCCCAAACGTCCAACC-----TGACCTTTTACGG    182
                     |||..||||||    |    |||     ||.|     |||||||||..||
BL02172___yus    142 AAATATTCTCCTGTAG----AAA-----AAGCTCATTTGACCTTTTTTGG    182

BSNT_04858___    183 AAACCAAACGGAAATTATTGA-TTTATTGCACGGAGACATTTCCCTTCAG    231
                     |.|.||||..||.|||||||| .||.|| ||.||.||||||||..|.|||
BL02172___yus    183 AGAGCAAAGCGAGATTATTGACCTTCTT-CATGGCGACATTTCATTGCAG    231

BSNT_04858___    232 CACCTGATTCAGAGCGGAAGCCTCAAAGTAAAGGGGTCATTCAGGGCCCT    281
                     ||.||..|.|||.||||.|...|.||||||||.||.||.||.||.||..|
BL02172___yus    232 CATCTCGTACAGCGCGGCACTGTTAAAGTAAAAGGCTCTTTTAGAGCTTT    281

BSNT_04858___    282 GTTAAAGCTGGAAGCCATTCTCTGGCTGACAAATGGATTTTTTCAGAGGG    331
                     .||.|||||.|||||.|||.|.||||||||..|.||.||           
BL02172___yus    282 ATTGAAGCTTGAAGCGATTTTATGGCTGACGGACGGCTT-----------    320

BSNT_04858___    332 TTTTAAAAA-----------ATTAA---    345
                     .||||||||           |||.|   
BL02172___yus    321 CTTTAAAAACAGCGATCTTTATTCATAG    348


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