Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04858 and BL02172
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:03
# Commandline: needle
# -asequence dna-align/BSNT_04858___yusD.1.5803.seq
# -bsequence dna-align/BL02172___yusD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04858___yusD-BL02172___yusD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04858___yusD-BL02172___yusD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04858___yusD
# 2: BL02172___yusD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 378
# Identity: 240/378 (63.5%)
# Similarity: 240/378 (63.5%)
# Gaps: 63/378 (16.7%)
# Score: 718.0
#
#
#=======================================
BSNT_04858___ 1 ATGGAGAAAGCGGAAGTTTTAG-AAGATGAGTATCAGCA----TCTGTTT 45
.||||||||..||.|.|..||| |||| ||| .||| |||.|||
BL02172___yus 1 TTGGAGAAAATGGGATTGATAGAAAGA-GAG----GGCAAGGCTCTTTTT 45
BSNT_04858___ 46 TTAAAACCCCTTTTGAATGCCT-CAA---CATTGCTCATTACCTTCCAAG 91
||||||||.||.|| || || ||| |.|||||.|||||.||.||||
BL02172___yus 46 TTAAAACCTCTATT--AT--CTACAACGGCTTTGCTGATTACGTTTCAAG 91
BSNT_04858___ 92 GAGAAGCAGAAGCCTTAACCGTCTCAATAAACGAACAGGGAGAAATGAAA 141
||||...||||||.||.||..|..||||.||||||.|.||.||||||.||
BL02172___yus 92 GAGAGAAAGAAGCTTTTACGTTAGCAATCAACGAAAAAGGGGAAATGGAA 141
BSNT_04858___ 142 AAAGTTTCTCC----GCCCCAAACGTCCAACC-----TGACCTTTTACGG 182
|||..|||||| | ||| ||.| |||||||||..||
BL02172___yus 142 AAATATTCTCCTGTAG----AAA-----AAGCTCATTTGACCTTTTTTGG 182
BSNT_04858___ 183 AAACCAAACGGAAATTATTGA-TTTATTGCACGGAGACATTTCCCTTCAG 231
|.|.||||..||.|||||||| .||.|| ||.||.||||||||..|.|||
BL02172___yus 183 AGAGCAAAGCGAGATTATTGACCTTCTT-CATGGCGACATTTCATTGCAG 231
BSNT_04858___ 232 CACCTGATTCAGAGCGGAAGCCTCAAAGTAAAGGGGTCATTCAGGGCCCT 281
||.||..|.|||.||||.|...|.||||||||.||.||.||.||.||..|
BL02172___yus 232 CATCTCGTACAGCGCGGCACTGTTAAAGTAAAAGGCTCTTTTAGAGCTTT 281
BSNT_04858___ 282 GTTAAAGCTGGAAGCCATTCTCTGGCTGACAAATGGATTTTTTCAGAGGG 331
.||.|||||.|||||.|||.|.||||||||..|.||.||
BL02172___yus 282 ATTGAAGCTTGAAGCGATTTTATGGCTGACGGACGGCTT----------- 320
BSNT_04858___ 332 TTTTAAAAA-----------ATTAA--- 345
.|||||||| |||.|
BL02172___yus 321 CTTTAAAAACAGCGATCTTTATTCATAG 348
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