Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03874 and BL02167
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:54
# Commandline: needle
# -asequence dna-align/BSNT_03874___czcD.1.5803.seq
# -bsequence dna-align/BL02167___czcD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03874___czcD-BL02167___czcD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03874___czcD-BL02167___czcD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03874___czcD
# 2: BL02167___czcD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1069
# Identity: 584/1069 (54.6%)
# Similarity: 584/1069 (54.6%)
# Gaps: 266/1069 (24.9%)
# Score: 1370.5
#
#
#=======================================
BSNT_03874___ 1 ---------------------ATGGGTCACAATCATAATG------AAGG 23
|..||.||||..||..||| .|..
BL02167___czc 1 ATGGCTCATTCTCACGGACATACAGGACACAGCCACCATGGCAGCCGATC 50
BSNT_03874___ 24 AGCAAATAAAAAGGTTTTATTGATC----TC-TTTTATCATGATTACAGG 68
|||||||.||||.|...|.||.||| || .|||| ||..||||
BL02167___czc 51 AGCAAATCAAAAAGCGCTGTTCATCAGCTTCGGTTTA--ATTTTTAC--- 95
BSNT_03874___ 69 TTATATGATAATAGAAGCTATAGGTGGATTTTTAACAAATAGTCTGGCGC 118
||.||||||.||.||||..|||||.|||.|.||.||.||.||.|| |||
BL02167___czc 96 TTTTATGATGATTGAAGTGATAGGCGGAATATTGACGAACAGCCT--CGC 143
BSNT_03874___ 119 TTT--TATCTGATGCAGGCCATATGCTGAGTGA----------------T 150
||| |.||.|||||.||.||||||||.||.|| |
BL02167___czc 144 TTTGCTGTCAGATGCGGGACATATGCTCAGCGACGCTGCGGCGCTTGGCT 193
BSNT_03874___ 151 TCAATTTCATTAATGGTTGCC-CTGATTGCTTTTACATTAGCTGAAAAAA 199
||| ||| || |.||.||||.|.| ||...|||
BL02167___czc 194 TCA---------------GCCTCT--TGGCGTTTAAAAT---TGGGGAAA 223
BSNT_03874___ 200 AGGCAAATCACAA-------TAAGACATTCGGCTATAAACGATTTGAGAT 242
|||| |.||| .||.|||||||||||.|..||.||||||||
BL02167___czc 224 AGGC----CGCAAGCGCGAGCAAAACATTCGGCTACAGGCGCTTTGAGAT 269
BSNT_03874___ 243 TCTTGCAGCTGTGATAAACGG-----TGCTGCCTTAATTCTTATTTCTCT 287
|.|.||.||..|.||.||.|| ..|||| ||.|.|||||.||
BL02167___czc 270 TTTGGCTGCGTTTATCAATGGCATCACCCTGC-----TTTTGATTTCACT 314
BSNT_03874___ 288 TTATATCATTTATGAAGCAATCGAACGCTTCTCTAATCCACCAAAAGTAG 337
||||||..|||..||||||..|.|.|||||.|..|..||.||..||||.|
BL02167___czc 315 TTATATTTTTTGGGAAGCATACAATCGCTTTTTCAGCCCGCCGGAAGTCG 364
BSNT_03874___ 338 CAACAACTGGAATGCTTACAATTAGTATCATCG--GGTTAGTTGTGAATC 385
|...||..||.||||||.|.||| .|| ||||.| ||
BL02167___czc 365 CGGGAAGGGGTATGCTTGCGATT-------GCGACGGTTGG-------TC 400
BSNT_03874___ 386 TATTGGTC------------GCTTGGATTATGATGAGTGGCGGAGATACA 423
|.||.||| ||.|||.|.||.||||..||| ||.|||
BL02167___czc 401 TGTTCGTCAACATTGCTGCGGCCTGGGTAATAATGAAAGGC---GACACA 447
BSNT_03874___ 424 AAGAATAATCTGAATATAAGAGGA--GCTTATTTACATGTAATAAGCGAT 471
|.....|||.|.||||| |.||| ||||.|||.||..|.||..|||||
BL02167___czc 448 AGCGGGAATTTAAATAT--GCGGAGCGCTTTTTTGCACATCATCGGCGAT 495
BSNT_03874___ 472 ATGCTCGGCTCTGTAGGTGCCATTTTAGCTGCCATCCTCATCATCTTCT- 520
|||||.||||||.|.||.||.||..|.||.|.|.||||.||..|.||||
BL02167___czc 496 ATGCTGGGCTCTTTCGGGGCGATCATCGCGGGCCTCCTTATGCTTTTCTT 545
BSNT_03874___ 521 ---TTGGATGGGGCTGGGCAGACCCATTGGCTAGTATCATTGTGGCTATT 567
||||| .|...||.||.|||.|.||.||...|.|.||.|||..|
BL02167___czc 546 CAATTGGA----ACATCGCCGATCCAATCGCCAGCGCCGTCGTCGCTGCT 591
BSNT_03874___ 568 CTTGTTCTAAGAAGCGGTTACAATGTGACTAAAGATTCCATTCACATATT 617
.|.|||||....|||||.|.....|||||.|||||.||..|.||.|||||
BL02167___czc 592 TTGGTTCTCGTCAGCGGCTGGCGGGTGACGAAAGACTCGGTGCATATATT 641
BSNT_03874___ 618 AATGGAAGGAACTCCAGAAA-ATATCGATGTC---------TA------- 650
|||||||||||..|| |||| |.||.|||| | ||
BL02167___czc 642 AATGGAAGGAAAACC-GAAAGACATTGATG-CGGAGGCGCTTAAAAACGG 689
BSNT_03874___ 651 --TGATAT-CAT----TCGTACAATTGAAGGGACAGAGGGAATTCAAAAC 693
||.|.| ||| |||..| ||||| ||
BL02167___czc 690 CCTGCTTTCCATCCCGTCGGTC------AGGGA-----GG---------- 718
BSNT_03874___ 694 ATTCATGATTTACACATATGGTCTATCACAAGCGGATTGAATGC--TCTT 741
||||.||..|.|||||.|||||.|||.| |.|.||| |||| ||.|
BL02167___czc 719 -TTCACGACCTCCACATTTGGTCGATCTC-ATCCGAT---ATGCCGTCAT 763
BSNT_03874___ 742 T---CTTGCCATGCAGTTGTTGACGATCAAC--TGAC--------CATTT 778
| | ||||||...||.|..||.|| .||| |||| .||||
BL02167___czc 764 TAAGC-TGCCATATCGTAGCGGATGA-AAACAGTGACAGGGATAGAATTT 811
BSNT_03874___ 779 CAGA--AAG--TGAAAATATTTTACGCAA-AATTGAACATGAACTTGAGC 823
.|.| ||| |.|||||||.|.|.|.|| |||..|||.|| ||||
BL02167___czc 812 TAAAACAAGTATCAAAATATCTAAGGAAAGAATGCAACGTG-----GAGC 856
BSNT_03874___ 824 ATAAAGGCATTACGCACGTAACCATTCAAATGGAAACCGAAGCGCATAAT 873
|| ||.||..|||||||.| ||..|.||||| |..|
BL02167___czc 857 AT---------------GTGACGGTTCAAATAG-AAGGGGAGCGC-TGTT 889
BSNT_03874___ 874 CACGACAATGCGATCCTTTGT-CAGCCCAAAATGGAGAAGCCGCGTGACC 922
|.|..| ||| .||| || ||||| ||| ||.|
BL02167___czc 890 CCCCTC-ATG-AATC----GTGCAGCC-----TGG-----------GAGC 917
BSNT_03874___ 923 --ACCATCACC---ATTAA 936
||||||.|| .||||
BL02167___czc 918 AAACCATCCCCGCTCTTAA 936
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