Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home
About
Genes
DNA alignment: BSNT_04787 and BL02146

See Amino acid alignment / Visit BSNT_04787 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:00
# Commandline: needle
#    -asequence dna-align/BSNT_04787___yunB.1.5803.seq
#    -bsequence dna-align/BL02146___yunB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04787___yunB-BL02146___yunB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04787___yunB-BL02146___yunB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04787___yunB
# 2: BL02146___yunB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 828
# Identity:     497/828 (60.0%)
# Similarity:   497/828 (60.0%)
# Gaps:         153/828 (18.5%)
# Score: 1497.5
# 
#
#=======================================

BSNT_04787___      1 ---------------------------------------TTGCCTTTCCG     11
                                                            ||||||||.||
BL02146___yun      1 TTGCGAAGACTTCGCGGCCCTCTGTCAAAAAGAGGACCTTTGCCTTTGCG     50

BSNT_04787___     12 TTACGTGATGCTCCTGTCCGTTGTCTTTTTTATCCTGTCAACAACGGTCA     61
                     .||.||.|||||.||.||..||.|.||||||||..|.|||||..|.||||
BL02146___yun     51 ATATGTCATGCTGCTTTCGTTTATATTTTTTATTTTTTCAACGGCCGTCA    100

BSNT_04787___     62 GCCTTTGGATGATCAATGGCTCGATCAAACCTG----TTTTAATGGACAT    107
                     ||||.|.|||.|||||....||.|||||||| |    ||   .||.||||
BL02146___yun    101 GCCTGTTGATTATCAACTCATCCATCAAACC-GACCCTT---CTGAACAT    146

BSNT_04787___    108 CGGCGAGATGGAAACGAAGCGTATAGCGACAGAGGTGATCCAGGATTCGA    157
                     ||..||.|||||||||||.||.||.|||||..|.||.||||||||..|..
BL02146___yun    147 CGCTGAAATGGAAACGAACCGGATTGCGACCCACGTCATCCAGGAAGCCG    196

BSNT_04787___    158 TTGAGGACTATATGTCTGACAG------TGAAAATATGAAAGATATGTTT    201
                     |.|||||.||||||      ||      |||||||.|||||.||.|..|.
BL02146___yun    197 TCGAGGATTATATG------AGCCAAGATGAAAATGTGAAAAATCTAGTA    240

BSNT_04787___    202 CAAATGAATTCTGATGAAAACGGAAACTTAACGACAATCGATTTTAATAC    251
                     .|||||||..|..|||||||.|||||..||||.|||||.|||||.||..|
BL02146___yun    241 GAAATGAAGACGAATGAAAATGGAAAAGTAACAACAATTGATTTCAACTC    290

BSNT_04787___    252 ACA-GGTTGTAAACAGTG---TGAAAACAAAAGTGACAAAGCAGCTTCAG    297
                     .|| |||..|    ||||   ||.|..|.|||.|.||.||.||.|||||.
BL02146___yun    291 TCATGGTCTT----AGTGGTATGCATTCGAAAATTACGAAACAACTTCAC    336

BSNT_04787___    298 GCTCATTTGAAAG-AGATGGAAACCCATACCGGACACAGCGG--------    338
                     |       .|||| .||.|||||       |.||.||||..|        
BL02146___yun    337 G-------AAAAGCTGAAGGAAA-------CAGAAACAGAAGAATTTAAT    372

BSNT_04787___    339 -CGCCAGTGAAAAC--------------ATTATG-----ATC---AACAT    365
                      |..|.|.||||||              ||.|||     |||   ||.||
BL02146___yun    373 TCTTCTGCGAAAACTCCCGAAGGTAAGAATGATGGTGTAATCTATAATAT    422

BSNT_04787___    366 TCCGCTGGGACAGGTAACCGGCAACAGCCTTCTTGGAAACCTCGGGCCGA    415
                     |||.|||||.||||.|||.||.|||...||||||||||||||.|||||||
BL02146___yun    423 TCCTCTGGGTCAGGCAACGGGAAACTCGCTTCTTGGAAACCTGGGGCCGA    472

BSNT_04787___    416 AAATCCCGGTCCGGTTCAATTTAATCGGTGACGCTTTTACAGATGTCAAA    465
                     ||||.||.||.|||||.|||.|..|.||.||.|..|||||||||.|  .|
BL02146___yun    473 AAATACCTGTACGGTTTAATGTTGTGGGGGATGTCTTTACAGATTT--TA    520

BSNT_04787___    466 ACCAAA--ATCAAGCCGTATGGCATAAATAACGCACTTATTGATATCAGC    513
                     |.||||  .||.||||.|||||.||.|||||.|||.|.||..||.||.|.
BL02146___yun    521 AGCAAAGTGTCGAGCCATATGGTATTAATAATGCATTAATAAATGTCGGT    570

BSNT_04787___    514 ATCTTTGTCGAAATTAAAGTGAAGGTCATCATTCCATTTGCCAGCAAAAC    563
                     .|..||||||||.|.||.||....|||.||||.||.|||||.|..|||||
BL02146___yun    571 GTGCTTGTCGAAGTCAAGGTCCGTGTCGTCATACCGTTTGCGACAAAAAC    620

BSNT_04787___    564 CGCTGTCGTCACAAATAATGTTCCTGTATCGATTAAAGCAGTGCAGGGCG    613
                     .||.||.||||.|||||...||||.|.|.|||||.||||.|||||.||.|
BL02146___yun    621 GGCGGTTGTCAAAAATACGATTCCGGCAACGATTCAAGCTGTGCACGGAG    670

BSNT_04787___    614 AAGTGCCGCAGTTTTATAATGGAAGCGGCGGC---TCGGGTGTCACGCCT    660
                     ||||.||..|.||.||.|..||.|.||||.||   .|||      ||||.
BL02146___yun    671 AAGTACCCGACTTCTACAGCGGCAACGGCAGCCAAACGG------CGCCA    714

BSNT_04787___    661 TCTGTCCAGCTCCCGAGCAGCAAAGAAGAAGACGGTGCTGATTCAAAAAA    710
                     ||..|.|||.|||    |..|||||              |||..|||||.
BL02146___yun    715 TCGATTCAGATCC----CTTCAAAG--------------GATGAAAAAAC    746

BSNT_04787___    711 AG----AAAAAAGCAGCAAA-----TAA    729
                     ||    |||||||.|.||||     |||
BL02146___yun    747 AGAGCAAAAAAAGGAACAAAAAGAGTAA    774


#---------------------------------------
#---------------------------------------
Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04787 and BL02146

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
