Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04874 and BL02128
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:04
# Commandline: needle
# -asequence dna-align/BSNT_04874___yusN.1.5803.seq
# -bsequence dna-align/BL02128___yusN.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04874___yusN-BL02128___yusN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04874___yusN-BL02128___yusN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04874___yusN
# 2: BL02128___yusN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 356
# Identity: 242/356 (68.0%)
# Similarity: 242/356 (68.0%)
# Gaps: 37/356 (10.4%)
# Score: 798.0
#
#
#=======================================
BSNT_04874___ 1 ATGAATCAGCAAAATCAA---AAAATTAGCAATCCGCAGACACCTGTACC 47
||||||||||||||.||| |||||..||||||.|.|.||.|||||.||
BL02128___yus 1 ATGAATCAGCAAAACCAACAGAAAATCGGCAATCAGGAAACCCCTGTCCC 50
BSNT_04874___ 48 ---GACAACATCGGAAATGAATGACAGAGATTTCGTCAACGAATTGCTGA 94
|||.|...|| |||||.|||||.|||||.|||||||||.||||||
BL02128___yus 51 AAAGACGAGCGCG---ATGAACGACAGGGATTTTGTCAACGAACTGCTGA 97
BSNT_04874___ 95 CAACCGAAAAATACATGACAACAGCTTATTGCACTGC-CTTGCACGAATT 143
|||||||||||||.|||||..||||.||.|..||.|| ||| .|.|||.|
BL02128___yus 98 CAACCGAAAAATATATGACGTCAGCATACTCGACGGCGCTT-AATGAACT 146
BSNT_04874___ 144 CAGCCACGAGTCTCTTTATCAGGATATTCAATCCATTTTTGATGAGTCAC 193
.|||||.||.||.|||||.||||...|.||..|..|.|||.|.|||.|.|
BL02128___yus 147 AAGCCATGAATCGCTTTACCAGGCCGTACAGCCGCTGTTTAACGAGGCGC 196
BSNT_04874___ 194 AAAAAGCGCAAAGAAAACTATATGATCTCATGTTCCAATATGGATGGTAT 243
||||.||.||..|.|.|.|.||..|..|.|||||.|||.|.||||||||.
BL02128___yus 197 AAAACGCTCAGCGCAGATTGTACCAGGTAATGTTTCAAAACGGATGGTAC 246
BSNT_04874___ 244 TCTGTTGAAGCGGAGGATGCACAAAAGCTGCAGCAGTCCTATCAAAAATT 293
...||.||.||.||.|||||.|||||..|.||||||||||||||..|.||
BL02128___yus 247 AAGGTGGAGGCAGAAGATGCCCAAAAAATCCAGCAGTCCTATCAGCAGTT 296
BSNT_04874___ 294 CCA---------GC-AGACCATTCAGCAGCAGTCTCCTTATCAG------ 327
||| || |||| |||||.|||||||||
BL02128___yus 297 CCATTCTACACTGCAAGAC----------CAGTCGCCTTATCAGCAAAAT 336
BSNT_04874___ 328 CAATAA 333
||||||
BL02128___yus 337 CAATAA 342
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