Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02774 and BL02122
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:32
# Commandline: needle
# -asequence dna-align/BSNT_02774___pksA.1.5803.seq
# -bsequence dna-align/BL02122___pksA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02774___pksA-BL02122___pksA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02774___pksA-BL02122___pksA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02774___pksA
# 2: BL02122___pksA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 719
# Identity: 370/719 (51.5%)
# Similarity: 370/719 (51.5%)
# Gaps: 238/719 (33.1%)
# Score: 815.0
#
#
#=======================================
BSNT_02774___ 1 ATGCCAAAACAAATTGACCATGAGAA--AAGAAGAAAACAAATTGCAGAA 48
|||||||||..|.||||.||.||.|| ||.|||||| |||||||.|||
BL02122___pks 1 ATGCCAAAAATAGTTGATCACGAAAAACAAAAAGAAA--AAATTGCCGAA 48
BSNT_02774___ 49 GCAACGTGGCGCGTCATTTTAGAACGAGGGATGGA--GGGA----GCATC 92
||...||||...||.||| .|| ||.|||||| .|.| ||| |
BL02122___pks 49 GCGGTGTGGAATGTGATT----CAC-AGAGATGGACTTGAACAATGCA-C 92
BSNT_02774___ 93 AGCCAGGAACATTGCAAAGGAAGCAGGATTGTCATTAGGTGCACTGCGCC 142
.|.|||.||..|.||.||||||||.|||.|.||....||..|..||||||
BL02122___pks 93 CGTCAGAAATGTCGCTAAGGAAGCCGGACTTTCGGCCGGGTCGATGCGCC 142
BSNT_02774___ 143 ATTATTTCTCTACA-CAGGATGAATTGCTTGCTTT-------TGCAATGA 184
||||||| ||..|| |||..||| ||||| |.||||||
BL02122___pks 143 ATTATTT-TCCTCATCAGTCTGA-------GCTTTTCATTTATTCAATGA 184
BSNT_02774___ 185 AACTTGTCCAAGAAAA---GGTGA-----CTGACCGAATTAAGGACATTG 226
..||||| .|.||| |||.| |..|.||||...|.||||||
BL02122___pks 185 GGCTTGT---GGCAAACCGGGTCAAAACGCGTATCGAAAACATGACATT- 230
BSNT_02774___ 227 CAGTGAGGGATTTGCTCC--CTAAGGAAAAAGTGTTGCAAA--------T 266
|.|.|| |.|.|| || |||||.|| |||| |
BL02122___pks 231 ---TAACGG---TACACCGGCT---GAAAACGT----CAAACAGCTTCTT 267
BSNT_02774___ 267 TTT--GCTTGAAATGGTCCCAACGAATGAAGAAACGATTAGA---GAGAT 311
||| |||| ||| ||.....|||||| |.||| |.| ||.||
BL02122___pks 268 TTTCAGCTT---ATG---CCTCTTGATGAAG-AGCGA--AAACTGGAAAT 308
BSNT_02774___ 312 GGAGGTTTGGTTTGCTTTTACTGCTTA--CGC-CAGACAT---------- 348
|||||..||||.|||.|||||.||..| ||| |||..||
BL02122___pks 309 GGAGGCATGGTATGCATTTACAGCCAAATCGCTCAGCGATCCGGAGCTCA 358
BSNT_02774___ 349 --------AAAAAGGATATGTTTGATGCGAATCATGACGGGATT--TTCA 388
|.||||||.||| .||||.||.||| ||||
BL02122___pks 359 AACCGTTGAGAAAGGAGATG------------AATGAAGGCATTTATTCA 396
BSNT_02774___ 389 G-CGGCATGCGGAATCTGATTGCCTATTTAGATGAATCCGATTTACTG-- 435
| |.||| |||| |.||.|| ||..|||||
BL02122___pks 397 GCCTGCA-----AATC-----GGCTGTT-----------GAAATACTGGT 425
BSNT_02774___ 436 --AAGCAGAATGCTGATAAAGAC----------------ATTGAAGCTGA 467
||.|.||| |.|||||| |..|||.|.||
BL02122___pks 426 AAAAACCGAA-----AAAAAGACCGGGATCGATGTTCTTAAGGAAACCGA 470
BSNT_02774___ 468 GAGACTTTACGCGCTTGTTGACGGCTTGGCTTTACATGCCATGCTTGA-- 515
|...||.|||||.|||||.|||||..||||..|.||| ||||
BL02122___pks 471 GCATCTATACGCCCTTGTCGACGGGCTGGCGCTTCAT-------TTGATC 513
BSNT_02774___ 516 -----CCCTG------TG-CGCGTGAATAAAGACCGA------ATTAAGC 547
||||| || ||..||| ||.||.||| ||| .||
BL02122___pks 514 ATGGCCCCTGAAAGGCTGACGGCTGA--AAGGATCGATACTGTATT-GGC 560
BSNT_02774___ 548 GGGTCATTATGCAGCATGTAGAGTCAATTTGCG-TGGAAGGTAAACGTGA 596
||||.||| || || || || ||||| ||.
BL02122___pks 561 GGGTTATT----------TA-AG---AT---CGTTGGAA--TAG------ 585
BSNT_02774___ 597 GACAGAAGAGAAGGAATAA 615
BL02122___pks 585 ------------------- 585
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