Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03950 and BL02109
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:58
# Commandline: needle
# -asequence dna-align/BSNT_03950___yrhE.1.5803.seq
# -bsequence dna-align/BL02109___yrhE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03950___yrhE-BL02109___yrhE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03950___yrhE-BL02109___yrhE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03950___yrhE
# 2: BL02109___yrhE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2977
# Identity: 2314/2977 (77.7%)
# Similarity: 2314/2977 (77.7%)
# Gaps: 65/2977 ( 2.2%)
# Score: 8941.0
#
#
#=======================================
BSNT_03950___ 1 ATGAATATGATGGACGGTAAGTCGATCAGTGTCCGTGTAGACGGAACAGA 50
||||||||.|||.|.||||||.||||..|||||||.|.|||
BL02109___yrh 1 ---------ATGGACGGAAAGCCAATCAGTATCCGGATAGACGGCAAAGA 41
BSNT_03950___ 51 AATTCAAGCACGAGCAGGGGCCACAATATTAGATATTTTAAATGAAAACG 100
|.||.|||||...||.|||||.||..|.|||||.||.||.||..||||||
BL02109___yrh 42 ATTTGAAGCAGTGGCCGGGGCAACCGTTTTAGACATATTGAACAAAAACG 91
BSNT_03950___ 101 GAATTGAGTACCCGCAGATTTGCCACGTACCAGAGGTTGACCCGATTCAA 150
|..||||..|||||||.||.|||||.|||||||||...||.||.||||||
BL02109___yrh 92 GGTTTGAACACCCGCAAATATGCCATGTACCAGAGACGGATCCTATTCAA 141
BSNT_03950___ 151 ACTTGTGATACTTGCATAGTAGAGGCAAACGGCAAGCTGGTT----CGTT 196
||.||||||||.||.||.||.||.|||.||||.|| .|| ||..
BL02109___yrh 142 ACGTGTGATACGTGTATTGTGGAAGCAGACGGAAA----ATTAAAACGGG 187
BSNT_03950___ 197 CATGCGC---GACGGTTGCAGAAAACGGGATGTCTATTGAT----CTATC 239
|||||.| | ||| ||.|||.||||.|||.| ||| ||.||
BL02109___yrh 188 CATGCTCCCTG-CGG--GCTGAAGACGGAATGAC----GATCAGCCTGTC 230
BSNT_03950___ 240 AGGAAATCGAGTGAAAGAAGCGCAAACCGAAGCGATGGACCGCCTTCTTG 289
||.|.|.||.||.||||..||.||||..|||||.|||||||||||.||.|
BL02109___yrh 231 AGCAGAACGGGTCAAAGCTGCACAAAAAGAAGCAATGGACCGCCTGCTCG 280
BSNT_03950___ 290 AAAATCATTTGCTGTATTGTACAGTTTGCGATAACAACAATGGAAACTGT 339
|||||||||||||.||||||||.||.|||||.||||||||.||.||||||
BL02109___yrh 281 AAAATCATTTGCTCTATTGTACGGTATGCGACAACAACAACGGGAACTGT 330
BSNT_03950___ 340 ACGCTGCATAATACAGCGGAAATGATGGGGATCGAGCATCAAAAATACCC 389
|.|||.||||||||.||.|||||||||||.|||||..|.||.||||||||
BL02109___yrh 331 AAGCTACATAATACGGCAGAAATGATGGGAATCGAAGACCAGAAATACCC 380
BSNT_03950___ 390 ATACACGCCAAAAGAAGATCCTTCTTGCGCAGTTGATATGTCTCATCCTT 439
.||||||||.||||||||.||.||||||||.||.||||||||.||.||.|
BL02109___yrh 381 TTACACGCCTAAAGAAGACCCGTCTTGCGCCGTCGATATGTCACACCCCT 430
BSNT_03950___ 440 TTTACCGCTATGATCCAAACCAATGTATTGCCTGCGGCCAGTGTGTTGAG 489
||||||||||||||||.||.||.||.|||||.|||||.||.||||||||.
BL02109___yrh 431 TTTACCGCTATGATCCGAATCAGTGCATTGCTTGCGGACAATGTGTTGAA 480
BSNT_03950___ 490 GTCTGTCAAAACCTTCAGGTAAATGAAACACTCTCAATCGACTGGGAACG 539
||.||.||||||||.|||||.|||||.||.|||||.||.||||||||.|.
BL02109___yrh 481 GTTTGCCAAAACCTGCAGGTCAATGAGACGCTCTCGATTGACTGGGAGCT 530
BSNT_03950___ 540 CGAACGCCCTCGCGTCATTTGGGATGAGGGAGTTCCGATCAATGAATCTT 589
.|||||.||.||.||.||.||||||||.||.||..|.|||||.|||||.|
BL02109___yrh 531 TGAACGGCCGCGGGTAATCTGGGATGAAGGCGTATCAATCAACGAATCCT 580
BSNT_03950___ 590 CCTGTGTCAGCTGCGGTCAGTGTGTCACAGTATGTCCATGTAATGCACTG 639
|.||.|||||||||||.|||||||||||.||.|||||.||.|||||..|.
BL02109___yrh 581 CATGCGTCAGCTGCGGGCAGTGTGTCACGGTCTGTCCGTGCAATGCGTTA 630
BSNT_03950___ 640 ATGGAAAAATCAATGCTCGGGCAGGCTGGCTTTATGACAGGGATTAAAGA 689
|||||||||||||||||.||..|.||.||.||.||||||||.||.|||..
BL02109___yrh 631 ATGGAAAAATCAATGCTTGGAAAAGCCGGTTTCATGACAGGCATCAAACC 680
BSNT_03950___ 690 GGACGTCATGGAACCGATGATTGACCTCGTGAAAAATGTTGAACCGGGGT 739
|||.||||||||.||||||||.|||||.||.|||.||||.||.|||||.|
BL02109___yrh 681 GGATGTCATGGAGCCGATGATCGACCTTGTCAAAGATGTAGAGCCGGGAT 730
BSNT_03950___ 740 ATGGCAGCATTTTTGCCATTTCTGAAGTCGAAGCGGCAATGCGTGAAACG 789
|..|||||||.||||||.||||.||||||||.|||||.||||||..|..|
BL02109___yrh 731 ACAGCAGCATCTTTGCCGTTTCAGAAGTCGAGGCGGCGATGCGTTCACAG 780
BSNT_03950___ 790 AGAACGAAAAAAACGAAAACTGTATGTACGTTCTGCGGTGTCGGGTGTTC 839
.|.||.|||||.||.|||||.||.||||||||||||||||||||.|||||
BL02109___yrh 781 CGGACCAAAAAGACAAAAACCGTCTGTACGTTCTGCGGTGTCGGCTGTTC 830
BSNT_03950___ 840 ATTTGAAGTATGGACAAAAGGACGGGATATTTTAAAGATCCAGCCTGTTT 889
|||||||||||||||||||||.||.||.||.|||||.||.|||||.||||
BL02109___yrh 831 ATTTGAAGTATGGACAAAAGGCCGTGACATCTTAAAAATTCAGCCGGTTT 880
BSNT_03950___ 890 CTGATGCTCCGGTTAACGCGATTTCCACATGTGTCAAAGGGAAATTCGGC 939
|.||.|||||.||.||.||.||.||.||.|||||.||||||||||||||.
BL02109___yrh 881 CAGAAGCTCCAGTCAATGCCATCTCGACGTGTGTGAAAGGGAAATTCGGA 930
BSNT_03950___ 940 TGGGATTTCGTCAATTCTGAGGAGCGAATCACAAAGCCTTTAATCCGTAA 989
|||||||||||||||||.||.||.||..|.||.||.||..|.|||||.||
BL02109___yrh 931 TGGGATTTCGTCAATTCGGAAGAACGTTTAACCAAACCGCTGATCCGCAA 980
BSNT_03950___ 990 AAATGGAGCCTTTGTGGAATCTTCTTGGGAAGAGGCCCTCGATCT-TGTC 1038
||||...|..|||||.|||||..||||||||||.||.||.|| || .||.
BL02109___yrh 981 AAATAACGAATTTGTCGAATCGACTTGGGAAGAAGCGCTTGA-CTACGTT 1029
BSNT_03950___ 1039 GCAAGCAGATTAGGATCAATTAAAGAGCAGTACGGTAAAGGCTCTGTCGG 1088
||..||||||||||.||.|||...||||||.||||.||||.|.|.|||||
BL02109___yrh 1030 GCCCGCAGATTAGGCTCGATTCGGGAGCAGAACGGAAAAGACGCAGTCGG 1079
BSNT_03950___ 1089 GTTTATTTCTTCTTCTAAAATTACGAATGAAGAAAACTACGTCATTCAAA 1138
.||||||||.|||||.|||||.||||||||||||||||||.|.||.||||
BL02109___yrh 1080 ATTTATTTCGTCTTCAAAAATCACGAATGAAGAAAACTACTTAATGCAAA 1129
BSNT_03950___ 1139 AGCTAGCGCGTCAGGTATTTGAAACAAACAATGTCGATAACTGCTCACGC 1188
||||.|||||.||.|||||||..||.|||||||||||.||||||||.|||
BL02109___yrh 1130 AGCTGGCGCGGCAAGTATTTGGCACTAACAATGTCGACAACTGCTCGCGC 1179
BSNT_03950___ 1189 TACTGCCAGTCTCCTGCTACAGACGGATTGTTCCGCACTGTCGGCATGGG 1238
||||||||||||||.||.||||||||||||||||||||.|||||||||||
BL02109___yrh 1180 TACTGCCAGTCTCCGGCAACAGACGGATTGTTCCGCACGGTCGGCATGGG 1229
BSNT_03950___ 1239 CGGTGACGCTGGCACGATTAAAGATATTGCCAAAGCCGGTCTCGTCATCA 1288
|||.||.||.|||||.|||.||||.||.||.|||||.||.||||||||||
BL02109___yrh 1230 CGGCGATGCAGGCACCATTCAAGACATCGCGAAAGCAGGCCTCGTCATCA 1279
BSNT_03950___ 1289 TCGTCGGCGCCAATCCGGCGGAAGGACACCCGGTGCTCGCAACACGCGTC 1338
|||||||||||||.|||||.|||||.||||||||.||.||.||.|||||.
BL02109___yrh 1280 TCGTCGGCGCCAACCCGGCCGAAGGCCACCCGGTACTGGCGACCCGCGTG 1329
BSNT_03950___ 1339 AAACGGGCGCACAAGCTTCACGGTCAAAAACTGATTGTTGCCGACCTGCG 1388
||.||.||.||.|||||||||||.|||||.|||||.||.|||||.||.||
BL02109___yrh 1330 AAGCGCGCCCATAAGCTTCACGGACAAAAGCTGATCGTCGCCGATCTTCG 1379
BSNT_03950___ 1389 TAAAAATGAGATGGCCGAGCGATCTGATCTGTTCATCAGCCCTAAACAAG 1438
.|||||.||.||||||||.||.||.||||||||||||||.||....||||
BL02109___yrh 1380 CAAAAACGAAATGGCCGAACGCTCGGATCTGTTCATCAGACCGCGGCAAG 1429
BSNT_03950___ 1439 GCACAGACCAAGTCTGGCTGATGGCTGTTACGAAATATATGATCGACCAA 1488
|.||.||.|||||.|||||||||||.||.||.||.||||||||||||||.
BL02109___yrh 1430 GAACTGATCAAGTATGGCTGATGGCCGTGACAAAGTATATGATCGACCAG 1479
BSNT_03950___ 1489 GGCTGGCACGATCAGGCGTTTATTGATGAGAATGTTAATTACTTTGAAGA 1538
|||||||||||||||||||||||.|||||.||.||.||||.||||||.||
BL02109___yrh 1480 GGCTGGCACGATCAGGCGTTTATCGATGAAAACGTCAATTTCTTTGAGGA 1529
BSNT_03950___ 1539 TTATAAAGAAACTCTTAAAACGTATACGCTTGATTATGCAGAACGCATCA 1588
.|||||..||.|||||.|.||.||.||.|||||.|||||||||...||.|
BL02109___yrh 1530 ATATAAGCAATCTCTTGAGACATACACCCTTGAATATGCAGAAAAAATTA 1579
BSNT_03950___ 1589 CAGGCCTTTCAAAAGAAAACA-----TCATTCAAATTGCTGAAATGATCC 1633
||||| .||.| .||||| |.||||||||.|||||.|||||||
BL02109___yrh 1580 CAGGC--ATCCA---TAAACAGACGCTGATTCAAATCGCTGAGATGATCC 1624
BSNT_03950___ 1634 GTGATGCTGACGGTACTTGTGTCCTTTGGGGAATGGGTGTCACACAAAAT 1683
|.||.||.||||||||.||..|.||||||||||||||.|||||.|||||.
BL02109___yrh 1625 GCGACGCCGACGGTACATGCATTCTTTGGGGAATGGGGGTCACCCAAAAC 1674
BSNT_03950___ 1684 ACAGGCGGTTCTGATACATCAGCAGCCATTTCAAACCTGCTTCTCGCTAC 1733
||.||||||||.||.||.||.|||||.|||||||||||||||.|.|||||
BL02109___yrh 1675 ACGGGCGGTTCCGACACGTCCGCAGCGATTTCAAACCTGCTTTTAGCTAC 1724
BSNT_03950___ 1734 GGGCAACTATCGCCGTCCAGGTGCCGGCGCTTATCCTCTGCGCGGACACA 1783
.||.||.||.|||||.||.||.||.||.|||||.||.||.|||||.||||
BL02109___yrh 1725 CGGGAATTACCGCCGCCCGGGCGCAGGAGCTTACCCGCTCCGCGGCCACA 1774
BSNT_03950___ 1784 ATAACGTGCAAGGCGCATGTGATATGGGAACATTGCCTGGCTGGCTGCCG 1833
|.||.||.||.|||||.||.||.|||||.||..|.||.||||||||.|||
BL02109___yrh 1775 ACAATGTCCAGGGCGCCTGCGACATGGGGACGCTTCCCGGCTGGCTTCCG 1824
BSNT_03950___ 1834 GGATATCAGCATATTACAGATGACAAGGCCCGCGCTAAA--TTTGAAGAG 1881
|||||||||||.||||||||||||||.| ||||..||| ||.|||.|.
BL02109___yrh 1825 GGATATCAGCACATTACAGATGACAAAG--CGCGGAAAAAGTTCGAACAA 1872
BSNT_03950___ 1882 GCATATGG------TGTCGA-GATTGATGGAAAGCCTGGTTTAGATAATA 1924
||.||.|| ..|||| || || ||||.||..|.||.||.|
BL02109___yrh 1873 GCTTACGGCACAACAATCGACGA-----GG--AGCCCGGACTTGACAACA 1915
BSNT_03950___ 1925 TTCAAATGCTTCATGCCATTGAAGAAGGAAAAATGAAAGCTATGTATCTT 1974
||.||||||||||.|||.||||||||||.|||||||||||.||||||.|.
BL02109___yrh 1916 TTGAAATGCTTCACGCCGTTGAAGAAGGCAAAATGAAAGCCATGTATATC 1965
BSNT_03950___ 1975 GTCGGTGAGGATATGGCACTGGTCGATTCAAACGCGAACCATGTGCATGA 2024
|||||.||.||||||||..|.||||||||||||||.||||..||.|||||
BL02109___yrh 1966 GTCGGAGAAGATATGGCTTTAGTCGATTCAAACGCAAACCGGGTCCATGA 2015
BSNT_03950___ 2025 TATTTTATCAAGCCTTGATTTCTTCGTGGTACAGGACATCTTCCTGTCAA 2074
.|||||||||||||||||.|||.|.|||||.|||||..|.|||||.||.|
BL02109___yrh 2016 CATTTTATCAAGCCTTGAATTCCTTGTGGTTCAGGATGTGTTCCTTTCGA 2065
BSNT_03950___ 2075 GAACAGCTCAATATGCTGATGTCGTCTTGCCGGCCACTCCTTCACTTGAA 2124
.||||||||||||.||.||.|||||..||||.||..|..||||.||||||
BL02109___yrh 2066 AAACAGCTCAATACGCCGACGTCGTTCTGCCTGCGTCAGCTTCTCTTGAA 2115
BSNT_03950___ 2125 AAAGACGGAACATTTACCAACACAGAACGCCGTGTCCAGCGATTGTATCA 2174
|||||.|||||.|||||.|||||.|||.|.|||||||||||.||||||||
BL02109___yrh 2116 AAAGATGGAACTTTTACAAACACGGAAAGACGTGTCCAGCGGTTGTATCA 2165
BSNT_03950___ 2175 GGCGCTTCCGACGCTTGGTGACGCAAAACCGGACTGGTGGATTATTCAAG 2224
||||||.|||.||||.||.||.||.||.|||||||||...||.|||||||
BL02109___yrh 2166 GGCGCTCCCGCCGCTCGGAGATGCGAAGCCGGACTGGGTTATCATTCAAG 2215
BSNT_03950___ 2225 AGGTGGCAAACCGTTTAGGAGCGAATTGGAATTACAGCCATCCAAGTGAC 2274
|..|.||||||||..|.|||||..|.||||.|||||||||.||..|.|||
BL02109___yrh 2216 ACATCGCAAACCGGCTTGGAGCTGACTGGAGTTACAGCCACCCTGGCGAC 2265
BSNT_03950___ 2275 ATTTTCTCTGAAATGGCGAGTCTTTCTCCTCTGTTTGCCAAAGCAAGCTA 2324
|||||.||.||||||||.||.||.|||||.|||||..||||.||....||
BL02109___yrh 2266 ATTTTTTCAGAAATGGCAAGCCTGTCTCCGCTGTTCTCCAAGGCGGATTA 2315
BSNT_03950___ 2325 TGAGGTGCTTGAAGGCTGGAACAGCTTCCTATGGGGCAGCTTCACAGGTG 2374
|||.|...|||||||.||||||||||||||.|||||||||||.||.||.|
BL02109___yrh 2316 TGACGCAATTGAAGGATGGAACAGCTTCCTGTGGGGCAGCTTGACCGGAG 2365
BSNT_03950___ 2375 AAAGCACACCGCTTCTGTATGAAGACGGATTTAATTTCCCTGACAAAAAA 2424
|||||||.||.|||.|||||||||||||.|||||.||.||||||...|||
BL02109___yrh 2366 AAAGCACGCCTCTTTTGTATGAAGACGGCTTTAACTTTCCTGACCGGAAA 2415
BSNT_03950___ 2425 GCCCGCTTTGCCCTTTCTGATTGGACCGAGCCAGCGGCATTTCCGGAGGA 2474
||.|||||||||.|..|.||.|||.|.|||||.||.|.||||||.|||||
BL02109___yrh 2416 GCGCGCTTTGCCATCGCAGACTGGGCAGAGCCCGCCGAATTTCCTGAGGA 2465
BSNT_03950___ 2475 ATATGACCTTCATATCAATAACGGCCGGATGCTGGAGCATTTCCACGAAG 2524
.||.||||||||.||.||.||||||||.||||||||||||||.|||||||
BL02109___yrh 2466 GTACGACCTTCACATTAACAACGGCCGAATGCTGGAGCATTTTCACGAAG 2515
BSNT_03950___ 2525 GAAACATGACAAATAAATCGAAAGGCATCCAAGCGAAAGTGCCAAATGTA 2574
|.||.||||||||.||||||..|||||||||.||.||||||||..|.||.
BL02109___yrh 2516 GCAATATGACAAACAAATCGGCAGGCATCCAGGCAAAAGTGCCGGACGTC 2565
BSNT_03950___ 2575 TTCGTTGAGATCTCACCTGAGCTTGCACAAGAGCGAGGTGTTTGTGACGG 2624
||.||.||..||||.||||||||.||..||||.||.||..|.||.|||||
BL02109___yrh 2566 TTTGTGGAAGTCTCGCCTGAGCTCGCCAAAGAACGGGGCATCTGCGACGG 2615
BSNT_03950___ 2625 TTCGCTTGTACGGCTCGTTTCTCCGTTCGGAGCAGTCAAATTGAAC-GCG 2673
.||||..||..||||..|.||.|||||.||.||.||.||||| ||| |||
BL02109___yrh 2616 ATCGCAGGTCAGGCTGATCTCGCCGTTTGGCGCCGTAAAATT-AACGGCG 2664
BSNT_03950___ 2674 CTGATCACAGACCGGGTACGGA-AAAATGAACTCTATTTGCCAATGAACT 2722
||..|.||||||||||| |.|| ..||.|||||.|||.||||.|||||||
BL02109___yrh 2665 CTTGTGACAGACCGGGT-CAGAGCGAACGAACTTTATCTGCCGATGAACT 2713
BSNT_03950___ 2723 CGACAGACAAGGAGTCAGCAATTAACTTCTTGACGGGCCCTGCAGCTGAT 2772
|||||||.||.||.||.||.||.||.||||||||.||.||.||||..|||
BL02109___yrh 2714 CGACAGATAAAGAATCGGCGATCAATTTCTTGACCGGTCCCGCAGTAGAT 2763
BSNT_03950___ 2773 AAACGGACGAACACGCCTGCTTATAAACAGACAAAGGTCCGCATGGAAGT 2822
...||.||.||.||.||.|||||.||.|||||.|||||.||.||||||||
BL02109___yrh 2764 GCGCGCACCAATACACCGGCTTACAAGCAGACCAAGGTTCGTATGGAAGT 2813
BSNT_03950___ 2823 GCTTGGCGGCTGTGAAACAGCGCCGCTTCCAAAAACAAATCCGCGCAACA 2872
|||.|||||.||||.|..|.||||||||||.|||||||||||||||||.|
BL02109___yrh 2814 GCTCGGCGGATGTGCAGAACCGCCGCTTCCGAAAACAAATCCGCGCAATA 2863
BSNT_03950___ 2873 AAAAACGGCATCCGCAAAACGGAGTCGAAGCAGAAAGAAAATGGAACCGC 2922
|.|||||.||||||||||||||.|..||||..||..|.||||||||.||.
BL02109___yrh 2864 AGAAACGCCATCCGCAAAACGGGGCTGAAGTCGAGCGGAAATGGAAGCGT 2913
BSNT_03950___ 2923 CCTGGCTATGTCCATCTGACTGATTAA 2949
||.||.||.||.|||.|.||.||.|||
BL02109___yrh 2914 CCGGGGTACGTTCATTTAACAGACTAA 2940
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