Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03951 and BL02108

See Amino acid alignment / Visit BSNT_03951 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:58
# Commandline: needle
#    -asequence dna-align/BSNT_03951___yrhD.1.5803.seq
#    -bsequence dna-align/BL02108___yrhD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03951___yrhD-BL02108___yrhD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03951___yrhD-BL02108___yrhD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03951___yrhD
# 2: BL02108___yrhD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 489
# Identity:     352/489 (72.0%)
# Similarity:   352/489 (72.0%)
# Gaps:          15/489 ( 3.1%)
# Score: 1188.5
# 
#
#=======================================

BSNT_03951___      1 ATGGCCACTCCGATTACGACGATCAAAAAAGAAACAAAAACAGCTGAGCA     50
                     |||||..||||.||.||..|.|||...||||||..||||.|.|..|||||
BL02108___yrh      1 ATGGCAGCTCCCATCACCGCCATCCGCAAAGAAGAAAAATCTGAGGAGCA     50

BSNT_03951___     51 AATTAAGCTTGAAAAAATAGAAGAACTGAAAGAGCTGCTGGCGGAAAATG    100
                     |||.||||||||||||.|.||||||||.||||..||..||||.|||.|.|
BL02108___yrh     51 AATAAAGCTTGAAAAACTCGAAGAACTCAAAGCCCTTTTGGCTGAACAGG    100

BSNT_03951___    101 AGGACGCCGTCTCTAAAACGATGACGTTAATGAATGAACTCAATGATCTT    150
                     |.|.||||||.||.||||||||||.|.|..|....|||||.||.|..||.
BL02108___yrh    101 AAGCCGCCGTTTCAAAAACGATGAAGCTTCTCGGCGAACTGAACGGCCTC    150

BSNT_03951___    151 GGAATTTTTGATGCGGCA-ACAAGCATGCTCAGAGCGAAGGAAGACATTG    199
                     ||.||..|||||||.||| || ||||||.||.|.||||||||||||||.|
BL02108___yrh    151 GGGATCCTTGATGCCGCAGAC-AGCATGATCGGCGCGAAGGAAGACATCG    199

BSNT_03951___    200 CCAAGATTGCGCTTGGCCAAGTTTCCCGCGAGCCTGTCACCAACCTCATC    249
                     ||||.||.|..||.|||||..|.|||...|||||.|.||..|||||.||.
BL02108___yrh    200 CCAAAATCGTCCTCGGCCAGCTGTCCAAAGAGCCGGCCAAAAACCTGATG    249

BSNT_03951___    250 AACACGATGATGGCCGCCGGAGGCGCATTGACAAAAGCCGATCCTG-AGT    298
                     ||.||....||.||.||.||.|||||..|..|.||||||||.||.| |||
BL02108___yrh    250 AATACAGCCATTGCAGCAGGCGGCGCTCTCTCCAAAGCCGAACCGGAAGT    299

BSNT_03951___    299 TTACA---GCAAAGCTTTTAGAAAGCGTAATGGCTGGGACTGAACAGGCA    345
                        ||   |.||| |||.||||||||.|..|.||.||.||..||||.|.|
BL02108___yrh    300 ---CATGGGGAAA-CTTGTAGAAAGCATCGTCGCCGGCACAAAACAAGGA    345

BSNT_03951___    346 CAAAGCTTTTTAAAAGAAGACAAGAAAGTCGGGGTTCTCGACCTGTTAAA    395
                     .|...||||||||||...||.||.|||..|||.||.|||||.|||.|.||
BL02108___yrh    346 GAGGACTTTTTAAAAAGCGATAAAAAAACCGGAGTCCTCGATCTGCTGAA    395

BSNT_03951___    396 AGCAATGAACGACCCTGACATCAACAGAGCCGTCGGCTTCGGCCTTCAGT    445
                     |||.||||||||.||.|||||||||.|.|||||||||||||||||.||.|
BL02108___yrh    396 AGCCATGAACGATCCGGACATCAACCGGGCCGTCGGCTTCGGCCTGCAAT    445

BSNT_03951___    446 TTTTAAAAGGCATGGGAAAAGAACTTCGAGAAA-AATAA    483
                     |||||||||||||||||||||..||    |||| |||||
BL02108___yrh    446 TTTTAAAAGGCATGGGAAAAGCGCT----GAAAGAATAA    480


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