Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03804 and BL02088
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:52
# Commandline: needle
# -asequence dna-align/BSNT_03804___holA.1.5803.seq
# -bsequence dna-align/BL02088___holA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03804___holA-BL02088___holA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03804___holA-BL02088___holA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03804___holA
# 2: BL02088___holA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1076
# Identity: 797/1076 (74.1%)
# Similarity: 797/1076 (74.1%)
# Gaps: 64/1076 ( 5.9%)
# Score: 2868.0
#
#
#=======================================
BSNT_03804___ 1 ---ATGGTATTTGATGTGTGGAAAAGCCTGAAAAAAGGAGATGTCCATCC 47
|.||||||||||||.|||||||||.||||||||||.||..|.|||||
BL02088___hol 1 ATGACGGTATTTGATGTTTGGAAAAGCTTGAAAAAAGGCGACATTCATCC 50
BSNT_03804___ 48 AGTTTATTGTTTATACGGAAAAGAGACATATCTGCTGCAAGAAACCG-TC 96
.||||||||.||.|||||.||||||||..||||.|||||.||.||.| ||
BL02088___hol 51 CGTTTATTGCTTGTACGGGAAAGAGACGCATCTTCTGCAGGAGACGGTTC 100
BSNT_03804___ 97 AGCAGGATCAGACAGACGGTCGTTGATCAGGAGACAAAGGATTTCAATCT 146
| .|||||||||||..|.||.||||||.|.|||||.||.||.||.||..|
BL02088___hol 101 A-AAGGATCAGACAAGCCGTTGTTGATGAAGAGACGAAAGACTTTAACTT 149
BSNT_03804___ 147 ATCCGTTTTTGATCTGGAAGAGGACCCGCTGGATCAAGCGATTGCAGATG 196
.||..|.||||||||||||||.|||.||||.||||..||..|.|..||||
BL02088___hol 150 CTCGATATTTGATCTGGAAGAAGACGCGCTCGATCTTGCCGTGGAGGATG 199
BSNT_03804___ 197 CTGAAACGTTTCCGTTTATGGGGGAGCGGCGTCTTGTCATTGTGAAAAAT 246
|.|||||.|||||||||||||||||..|||||||||||.|.|.||||||.
BL02088___hol 200 CGGAAACCTTTCCGTTTATGGGGGAAAGGCGTCTTGTCGTGGCGAAAAAC 249
BSNT_03804___ 247 CCATATTTTTTAACAGGTGAAAAGAAAAAAGAAAAAATTGAGCACAACGT 296
||....||||||||||.||||||.||.||.||.||..|||||||.||..|
BL02088___hol 250 CCGGCGTTTTTAACAGCTGAAAAAAAGAAGGATAAGCTTGAGCATAATCT 299
BSNT_03804___ 297 CAGTGCGCTTGAATCATATA-TACAATCA-CCTGCGCCTTACACAGTCTT 344
|.|||..||.|||.|.||.| ||| .|| ||.||.|||||..|.||.||
BL02088___hol 300 CGGTGTACTGGAAGCTTACATTAC--GCAGCCGGCACCTTATTCCGTGTT 347
BSNT_03804___ 345 TGTCCTGCTTGCTCCGTATGAAAAGCTTGATGAGCGAAAAAAGCTGACGA 394
|||..|||||||.||.|||||||||||.|||||.||.||||||||||| .
BL02088___hol 348 TGTTTTGCTTGCGCCTTATGAAAAGCTCGATGAACGGAAAAAGCTGAC-C 396
BSNT_03804___ 395 AAGCGT--TAAAGAAGCACGCGTTTATGATGGAGGCGAAGGAATTAAATG 442
|||| | |.||.|||||.|||...|||.||||.|||||||||||||..|
BL02088___hol 397 AAGC-TCCTGAAAAAGCATGCGCACATGGTGGAAGCGAAGGAATTAACCG 445
BSNT_03804___ 443 CAAAGGAAACGACAGACTTTACTGTCA-ACCTTGCAAAAACAGA--GCAG 489
|.||.||||||.|.||||||| |..|| .|||.||.||..|.|| ||
BL02088___hol 446 CCAAAGAAACGGCTGACTTTA-TCGCAGGCCTCGCGAAGTCGGAAGGC-- 492
BSNT_03804___ 490 AAAAC-AATCGGCACGGAAGCGGCGGAGCATTTGGTTCTGCTTGTGAACG 538
|||| |||||...||||||||||||||.|..|.||.||| ||.|
BL02088___hol 493 -AAACAAATCGAACCGGAAGCGGCGGAGGAGCTTGTCCTG-TTAT----- 535
BSNT_03804___ 539 GTCA------TCTGTCATCGATTTTTCAGGAGATTCAAAAGCTCTGCACG 582
|||| |||||||.|.|||...||||||.||.||||||||.|.||.
BL02088___hol 536 GTCATGCAAGTCTGTCAGCCATTGCCCAGGAGGTTAAAAAGCTCAGTACA 585
BSNT_03804___ 583 TTTATTGGAGATCGTGAAGAAATTACGCTGGATGATGTAAAAATGCTTGT 632
|.||..||.||.||.|.|||.||.||..|.||.|||||.|.||.||||||
BL02088___hol 586 TATACCGGTGACCGCGGAGAGATCACCATAGAGGATGTCAGAAAGCTTGT 635
BSNT_03804___ 633 TGCTAGAAGCCTTGAACAAAATATTTTTGAGCTGATCAATAAAATCGTCA 682
.||.|||.|.|||||||||||||||||.||.|||||||||||..||||||
BL02088___hol 636 AGCGAGAGGGCTTGAACAAAATATTTTCGAACTGATCAATAAGGTCGTCA 685
BSNT_03804___ 683 ACCGAAAACGAACAGAGAG-TCTGCAAATTTTTTATGATTTGCTAAAACA 731
|.||.|||||.||||| || .|||||.|||||.||.|||.|..||||.||
BL02088___hol 686 ATCGGAAACGTACAGA-AGCGCTGCAGATTTTCTACGATCTATTAAAGCA 734
BSNT_03804___ 732 AAATGAAGAACCGATCAAAATTATGGCGCTTATTTCGAATCAGTTCCGGC 781
|||||||||.|||||.|||||.||||||||.|||.|.|||||||||.|||
BL02088___hol 735 AAATGAAGAGCCGATTAAAATGATGGCGCTGATTGCTAATCAGTTCAGGC 784
BSNT_03804___ 782 TGATTCTGCAGACGAAGTACTTCGCGGAACAGGGATACGGACAAAAACAA 831
||.|..|||||||.||.||.||..|.||.|||||||||||||||||.|||
BL02088___hol 785 TGCTGATGCAGACCAAATATTTTTCTGACCAGGGATACGGACAAAAGCAA 834
BSNT_03804___ 832 ATCGCTTCTAATCTAAAAGTTCACCCATTTCGGGTAAAGCTGGCGATGGA 881
|||||.||.||.||.|||||.|||||.||..||||.|||||||||||.||
BL02088___hol 835 ATCGCCTCAAACCTTAAAGTGCACCCGTTCAGGGTGAAGCTGGCGATCGA 884
BSNT_03804___ 882 TCAAGCAAGGCTTTTTTCAGAGGAGGAGCTCCGTTTA-----ATTATTGA 926
.||.||.|||||||||||||||.|||||| ||| |||||.||
BL02088___hol 885 GCAGGCGAGGCTTTTTTCAGAGCAGGAGC-----TTAGGAACATTATCGA 929
BSNT_03804___ 927 ACAGCTTGCCGTCATGGACTATGAGATGAAAACCGGGAAAAAGGACAAGC 976
.|||||.|||||.|||||.|||||.|||||.||.||.|||||.|||||||
BL02088___hol 930 GCAGCTCGCCGTGATGGATTATGAAATGAAGACAGGCAAAAAAGACAAGC 979
BSNT_03804___ 977 AGCTCCTGCTCGAACTGTTCCTTTTAC---AGCTGTTAAAAAGAA----- 1018
||||||||||.||||||| ||||.| |||||.| |.|
BL02088___hol 980 AGCTCCTGCTTGAACTGT---TTTTGCTGAAGCTGCT-----GCAGCCTC 1021
BSNT_03804___ 1019 ATGAAAAAAACGATCCCCATTATTGA 1044
||||||||||||..|.||.|||.
BL02088___hol 1022 ATGAAAAAAACGGCCTCCTTTAA--- 1044
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