Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03809 and BL02087
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:52
# Commandline: needle
# -asequence dna-align/BSNT_03809___comEC.1.5803.seq
# -bsequence dna-align/BL02087___comEC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03809___comEC-BL02087___comEC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03809___comEC-BL02087___comEC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03809___comEC
# 2: BL02087___comEC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2704
# Identity: 1479/2704 (54.7%)
# Similarity: 1479/2704 (54.7%)
# Gaps: 716/2704 (26.5%)
# Score: 3493.0
#
#
#=======================================
BSNT_03809___ 1 ATG----------------------GCGGCAGC---TTCGGCAACGGCTG 25
||| |||| ||| |||.||..|.||.|
BL02087___com 1 ATGGACAGACATCGCATCTTCCCGTGCGG-AGCGATTTCAGCGGCAGCCG 49
BSNT_03809___ 26 GAATTACTGCCGCCGC------------TTAT---TTCCCCGC------T 54
|||| .|||.|||| |||| ||||.||| |
BL02087___com 50 GAAT---CGCCTCCGCTCACTCTTCTCTTTATCTCTTCCTCGCCGTCGGT 96
BSNT_03809___ 55 ATTTTTCTTTTC---ATCCTCTTTCTCCTCATCATTTTAATCAAAACGAG 101
.|||||||.||| |||||||.|.||.||| ||||..|.
BL02087___com 97 TTTTTTCTGTTCTTTATCCTCTGTTTCTTCA-----------AAAAACAA 135
BSNT_03809___ 102 GCAC-GCTTTTCTCATTAT-------TGTTTGTTTCTTCTCTTTTATATT 143
..|| .||||||.|.|||| .||||||.|.||.|.|||||
BL02087___com 136 ATACTCCTTTTCGCTTTATGTGCAGCGGTTTGTATTTTATATTTTA---- 181
BSNT_03809___ 144 GTTTTTTGTAC-TGTATGCAGTCACAGATTCTCAGAATGTCTCTTCCTAT 192
.||.|||.||| || ||
BL02087___com 182 CTTCTTTTTACGTG----------------------------------AT 197
BSNT_03809___ 193 CGGCAGGGAACC-TATCAATTCAAGG------CAGTGA--------TTGA 227
|| ||| |.|||||.|||.| || ||| ||.|
BL02087___com 198 CG-------ACCATTTCAATACAACGATTTATCA-TGAAGGCAAATTTCA 239
BSNT_03809___ 228 CAC------------------TATTCCCAAAATTGACGGCGACCGTATGT 259
||| |||||||..|||.|||||.|||||..|.|
BL02087___com 240 CACGCTCGCTTCTGTTCAGGATATTCCCGTAATAGACGGAGACCGGCTTT 289
BSNT_03809___ 260 CTATGATGGTTGAGACACCTGATAAGGAAAAATGGGCT------GCTGCG 303
||.|.|..|..||.||| |||.|||.|.|| ||| ||.|..
BL02087___com 290 CTTTCACAGCCGAAACA---GATGAGGGAGAA---GCTTTGAAAGCGGGA 333
BSNT_03809___ 304 TAT-CGCATTCAGTCTGCTGGTGAAAAAGAA-------------CAGCTG 339
||| ||| |.|.||||.| |.||||| |||||.
BL02087___com 334 TATACGC-TCCGGTCTCC------ACAAGAAAAACGGGCGCTCTCAGCTC 376
BSNT_03809___ 340 TTATACATAGAACCAGGAA-------TGTCATGTGAGTTGACTGGTACAT 382
|| .|.||.||.| |||||||..||.||| ||
BL02087___com 377 TT-------CAGCCGGGCAGCCTCTGTGTCATGCAAGGTGA-------AT 412
BSNT_03809___ 383 TGGAAGAACCGAATCACGCAACTGTGCCGGGTGCATTTGATTATAACGAG 432
|..||||.|||||..|.|..||.||.||.||..|.|||.||.|.|| ||
BL02087___com 413 TAAAAGAGCCGAAAAAAGAGACGGTTCCTGGCACTTTTAATCAAAA--AG 460
BSNT_03809___ 433 TATC--TTTATC------GGCAGCATATTCATTGGAACTACTCTG-TCAC 473
.||| |.|||| || |||||.||||..|...|.| |||
BL02087___com 461 AATCCATGTATCAAAAAGGG------ATTCACTGGATTTTTGCAGTTCA- 503
BSNT_03809___ 474 GTCTATTCAAAACTGCA---------GCGAACCTGAAAATTTTAAGTACA 514
|||||||..||.||||| ||| .|||||
BL02087___com 504 GTCTATTACAAGCTGCAAGCCGGGCGGCG-GCCTGA-------------- 538
BSNT_03809___ 515 AGGTGCTCAGCTTGA--GAAAACATATCATATCATTCACAAACAGCCTTT 562
||| ||.||..| ||||| |||.||| ||| .
BL02087___com 539 ---TGC-CATCTCTATTGAAAA-------------TCAGAAA-AGC---G 567
BSNT_03809___ 563 TGCCTCCTGATT---------------------------CGGCAGGGATT 585
.|||| ||||| |.||.||.|||
BL02087___com 568 GGCCT--TGATTTTATAGAGGAAAATATGGCGGACTCGGCTGCCGGTATT 615
BSNT_03809___ 586 GTACAG-GCACTTACAGTTGGTGACAGATTTTATGTGGAGGATGAAGTGC 634
|.| || ||.||.|...|.||.|||.|.|||....|.||..|.||.||.|
BL02087___com 616 GGA-AGAGCGCTAATTTTCGGAGACCGGTTTCTCATTGAACAAGATGTCC 664
BSNT_03809___ 635 T-TACCGCGTATCAAAAGCTTGGTGTTGTCCATCTCTTGGCAATATCAGG 683
| .||.|| |||||....|||||..|..|.||.||.||.||.||.||.||
BL02087___com 665 TGGACGGC-TATCAGCGTCTTGGAATCATTCACCTTTTAGCGATTTCCGG 713
BSNT_03809___ 684 ACTCCACGTGGGGATTTTGACAGCAGGTTTGTTTTATATCATGATTCGCC 733
.||.||.||.||..|..|..||||.|.|.|||||||.||..|.||||||.
BL02087___com 714 GCTTCATGTCGGTCTGCTCTCAGCCGCTCTGTTTTACATATTTATTCGCT 763
BSNT_03809___ 734 TTGGTATAACTAGAGAAAAGGCGTCAATTCTGTTGCT-GTTAT-----TT 777
|.||..|.|| |||..||.||| |||....|.|||| ||.|| ||
BL02087___com 764 TCGGCGTCAC--GAGGGAATGCG-CAAAATGGCTGCTCGTGATCGGCCTT 810
BSNT_03809___ 778 C----TGCCGCTCTATGTGA-TGTTGACCGGCGCTGCTCCTTCAGTGCTA 822
| |||||| | |.||||||||.|..||.||.||.|||.|.
BL02087___com 811 CCCGTTGCCGC--------AGTTTTGACCGGAGGCGCCCCGTCGGTGATG 852
BSNT_03809___ 823 CGCGCCGCTCTCATGTCGGGTGTTTA-CTTAGCTGGAAGCCTTGTC--AA 869
.|.||.|.|.|||||||.|...|.|| || |||||.|.|..|||| ||
BL02087___com 853 AGAGCGGTTTTCATGTCTGAAATCTATCT--GCTGGCATCACTGTCTAAA 900
BSNT_03809___ 870 ATGGCGTGTCCACTCTGCAACTGCA---------ATTTG-TC----TTTC 905
|.| ||||.|| ||.|| || ||.|
BL02087___com 901 AAG---------------AACTTCAAAAGTGCCGATGTGATCAGCATTGC 935
BSNT_03809___ 906 ATACATCGTCCTTCTGCTCT-TCAATCCTTATCATCTCTTTGAAGCCGGT 954
.|.|.|||..||.|||||.| || |||||||||...|.|||.|||||||.
BL02087___com 936 CTGCCTCGGACTGCTGCTGTATC-ATCCTTATCTGTTATTTCAAGCCGGA 984
BSNT_03809___ 955 TTTCAGCTATCGTTCGCCGTCAGTTTTTC--TTTAATTCTATCCTCTTCT 1002
||.|||||.||.||.||.|| .|..||| |||.||||| |||.
BL02087___com 985 TTCCAGCTTTCTTTTGCTGT--ATCCTTCGTTTTCATTCT------TTCA 1026
BSNT_03809___ 1003 A-----TTTTTCATCAGG--TTAAAACC---TC-CTTGGGGCAGCTGACA 1041
| .|.||.|.|||| ..|||.|| || || |||||| |.
BL02087___com 1027 AAGGAGATATTGACCAGGCCGAAAAGCCGAATCTCT-----CAGCTG-CT 1070
BSNT_03809___ 1042 ATT-GTATCACTCATCGCTCAGCTGGGCTCGCTTCCGATTCTCCTATATC 1090
||| |..|||.|..|.||||||||.|..||.||.||||||||.||.|.||
BL02087___com 1071 ATTGGGGTCATTTTTGGCTCAGCTCGCTTCCCTCCCGATTCTGCTTTTTC 1120
BSNT_03809___ 1091 ATTTTCATCAGTTTTC-TATCATCAGCGTACCGATGAATATGTTGATGGT 1139
|||||||..||||||| |.|| |||||..|...||||||.|.||
BL02087___com 1121 ATTTTCAAGAGTTTTCATTTC-TCAGCACATTAATGAATCTATT------ 1163
BSNT_03809___ 1140 ACCATTTTATACCT-TCTGTATTT---------TGCCGGGAGCTGT---- 1175
|||||||||| |.|.||||| |||| |||||
BL02087___com 1164 ----TTTTATACCTCTTTATATTTTCATCATCATGCC----GCTGTCTTT 1205
BSNT_03809___ 1176 ----AGCAGGTGTTCTTCTATTAAGTCTTTCCGTTTCGTTTGGGAGA--- 1218
|||..|..|.||| |..||.|| |||| .||..|||||.||
BL02087___com 1206 CGGAAGCCTGCTTGCTT-TCATATGT-TTTC---ATCCCTTGGGGGAGGC 1250
BSNT_03809___ 1219 --------TTGTTTTTCAGCTGGTTTGATTTATTGATAAGCTGGA-CCAA 1259
..|||.||.|.| ||.||.|| .|| |||| |||.
BL02087___com 1251 GGCAGCCGCCGTTCTTGACC--GTCTGCTT--GTG------TGGAGCCAT 1290
BSNT_03809___ 1260 TAGGCTAATCACAAACATT-------GCAGATGTTGAAGTGTTCACGATT 1302
.|||||..| .||||..| ||.||||||...||.|| ||
BL02087___com 1291 CAGGCTGTT--AAAACGGTGTCTGCCGCGGATGTTTCGGTCTT-----TT 1333
BSNT_03809___ 1303 ATGATC-GCACATCCTGC---ACCTGTT-TTGCTTTTTTTA-TTCACGGT 1346
.|| | ||..|.|| || |.||.|| ||| |||||.|| |||||.|
BL02087___com 1334 CTG--CGGCTAAGCC-GCCGGATCTTTTGTTG-TTTTTCTACTTCACAG- 1378
BSNT_03809___ 1347 CACGATCATCCTATTGCTTATGGCGATTGAAAAA-------CGCTCCTTG 1389
|.||..|.||.||..|..||..|.|.|||||| ||||.|.|
BL02087___com 1379 --CCATTTTTCTGTTTTTGCTGTTGCTGGAAAAAGAGATGTCGCTTCGT- 1425
BSNT_03809___ 1390 TCGCAGT--TGAT--GGTAACCGGAGGCAT--TTGCTGCACGGTGATGTT 1433
||.|| |||| .|| || |||.| ||||||| || ||||
BL02087___com 1426 --GCGGTCATGATTCCGT--CC---GGCCTGCTTGCTGC----TG-TGTT 1463
BSNT_03809___ 1434 TCTGCTCTTTATATATCCGTGTCTT----AG-TTCC----GAAGGAGAAG 1474
|.|| ||..|..|.|||||| || ||.| ||.|||||.|
BL02087___com 1464 TGTG------ATTCACGCATGTCTTCCTCAGCTTGCAGGTGAGGGAGAGG 1507
BSNT_03809___ 1475 TGGATATGATAGATATTGGACAGGGTGACAGCATGTTTGTAGGTGCTCCG 1524
|....|||.|.|||||.||.||.||.||||||||||.|||..|.|||||.
BL02087___com 1508 TTACAATGCTTGATATCGGCCAAGGGGACAGCATGTATGTCAGCGCTCCC 1557
BSNT_03809___ 1525 CATCAG-CGGGGGCGTGTCTTAATTGATACCGGCGGCACTTTGTCTTACT 1573
..|||| ..||..|| |||||.||||||||.||.||.||..|.||.|.|.
BL02087___com 1558 GGTCAGAATGGCACG-GTCTTCATTGATACGGGAGGAACCGTATCCTTCC 1606
BSNT_03809___ 1574 CGTCAGAGCCTTGG----CGCGAAAAACAGCATCCGTTTTCACTGGGGGA 1619
.|..|||||..||| .|||.||.| ||.|| ||||||.|||||||
BL02087___com 1607 GGAAAGAGCGGTGGAGAAAGCGGAAGA-AGGAT---TTTTCATTGGGGGA 1652
BSNT_03809___ 1620 AAAGGTGCTGATTCCGTTTTT---AACTGCTAAGGGAATCAAACAGCTTG 1666
.|..|||.|.||.||.|||.| ||| |.||||| .||||..||||.|
BL02087___com 1653 GAGCGTGTTAATGCCTTTTCTGGCAAC--CAAAGGG-GTCAAGAAGCTCG 1699
BSNT_03809___ 1667 ACGCTTTAATTCTGACGCACGCTGACCAAGATCATATCGGAGAGGCGGAG 1716
|.|||||||||.||||.||.|||||.||.|||||||||||.||.|||.|
BL02087___com 1700 ATGCTTTAATTTTGACCCATGCTGATCAGGATCATATCGGTGAAGCGCA- 1748
BSNT_03809___ 1717 ACTCTGCTGA---AGCATCATAAAGTAAAGC----GCCTCGTGATTCCGA 1759
|.|||||| |..|.||||||||.|||| | .||||| ||||
BL02087___com 1749 --TGTGCTGATCCAAAAACATAAAGTGAAGCAATTG-ATCGTG---CCGA 1792
BSNT_03809___ 1760 AAGGGTTCGTTTCTGAACCTAAAGATGAGAAAG-TGCTGCAGACAGCCAG 1808
||||.||||...|.|||||....||||| |||| ||||.| |||
BL02087___com 1793 AAGGCTTCGCAGCCGAACCGTCTGATGA-AAAGCTGCTTC-----GCC-- 1834
BSNT_03809___ 1809 AGAAGAGGGAGTGACAATTGAAGAGGTGAAG----CGAGGCG-ATGTATT 1853
.||.| |||||| |||| |||||.| |||||
BL02087___com 1835 ----------TTGCC--TTGAAG----GAAGGCGTCGAGGTGAATGTA-- 1866
BSNT_03809___ 1854 GCAAATAAAGG-------------ATTTGC-------AGTTCCATGTACT 1883
||.||.|.||| |||.|| |.||..||||.||
BL02087___com 1867 GCCAAAAGAGGTGACATCCTTCATATTGGCAATCTTGAATTTTATGTTCT 1916
BSNT_03809___ 1884 GTCACCTGGAGCACCTGATCCGG-CA-----AGCAAAAATAATTCCTCTC 1927
.|||||...| ||..||| || ||||||||.|||...||.|
BL02087___com 1917 TTCACCGAAA------GAGGCGGACAAAAACAGCAAAAACAATGGTTCCC 1960
BSNT_03809___ 1928 TCGTTCTGTGGATGGAGACGGGCGGTATGAGC-TGGATCTTGACGGGTGA 1976
||||..||||||||.|..|.||||| ||...| |||.|.||.||.||.||
BL02087___com 1961 TCGTATTGTGGATGAAAGCAGGCGG-ATTTTCGTGGCTGTTAACTGGAGA 2009
BSNT_03809___ 1977 CCTGGAGAAAGAAGGGGAACAGGAGGTGATGGACGTGTTTCCAAATATTA 2026
..|||||||.||.||.|||.|||||.|||||||.||||.|||.|||.|||
BL02087___com 2010 TTTGGAGAAGGAGGGCGAAAAGGAGATGATGGAAGTGTATCCGAATCTTA 2059
BSNT_03809___ 2027 AAGCAGAT-GTCTTAAAGGTGGGGCACCATGGGAGCAAAGGCTCTACCGG 2075
||||.||| .|||.||| ||.||.||||||||.||||||||.||.||.||
BL02087___com 2060 AAGCGGATATTCTGAAA-GTCGGTCACCATGGAAGCAAAGGTTCGACGGG 2108
BSNT_03809___ 2076 TGAAGAATTCATCCAACAGCTTCAGCCGAAAACGGCCATTATCTCAGCCG 2125
||||||..|.|||.|.||..||.||||||||||.|||.|.||.||.||.|
BL02087___com 2109 TGAAGAGCTGATCAAGCAAATTGAGCCGAAAACCGCCCTCATTTCGGCGG 2158
BSNT_03809___ 2126 GGAAAAACAATCGGTACCATCATCCTCATCAAGAAGTTCTGCAACTATTA 2175
||.|..||||.||.|||...|||||.||....|||||.|||
BL02087___com 2159 GGGAGCACAACCGCTACGGGCATCCCCACGGGGAAGTGCTG--------- 2199
BSNT_03809___ 2176 CAGAGACATTCT-ATCCGC------------GTGCTGCGAACAGATCAAA 2212
|||||.|| |.|||| |||.|..||||.||||...
BL02087___com 2200 ----GACATCCTAAACCGCCACGATGTGAAGGTGTTCAGAACGGATCGGC 2245
BSNT_03809___ 2213 ACGGAACGAT------CCAATATAGATACAAAAACAGAGTTGGAACCTTT 2256
||||..|||| ||.||.|.||..|...||| |||||.|||
BL02087___com 2246 ACGGTTCGATTCAGCACCTATTTCGAGGCGGGAAC------GGAACGTTT 2289
BSNT_03809___ 2257 TCTGTCT--ATCCTCCATATGA-----TACAT------------------ 2281
| || || ||||||||||||| |||||
BL02087___com 2290 T-TG-CTACATCCTCCATATGATAAAGTACATTCCCCGCAAGAAAAAATG 2337
BSNT_03809___ 2282 ----CAGATATAACAG-AGACG--AACTAA-------------------- 2304
|.|| |.||||| ||.|| || ||
BL02087___com 2338 ACTGCTGA-AAAACAGCAGTCGTCAA--AAAGCCGCTTGCCTGACGGAGA 2384
BSNT_03809___ 2304 ---- 2304
BL02087___com 2385 GTAA 2388
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