Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03811 and BL02085

See Amino acid alignment / Visit BSNT_03811 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:52
# Commandline: needle
#    -asequence dna-align/BSNT_03811___comEA.1.5803.seq
#    -bsequence dna-align/BL02085___comEA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03811___comEA-BL02085___comEA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03811___comEA-BL02085___comEA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03811___comEA
# 2: BL02085___comEA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 712
# Identity:     405/712 (56.9%)
# Similarity:   405/712 (56.9%)
# Gaps:         176/712 (24.7%)
# Score: 1023.5
# 
#
#=======================================

BSNT_03811___      1 ATGA---ATTGGTTGAATCAGCATAAGAAAGCAATTATTTTAGCGGC-TT     46
                     .|||   |||||.|.||.||..||||          ||      ||| |.
BL02085___com      1 TTGACAGATTGGCTAAAACAATATAA----------AT------GGCATG     34

BSNT_03811___     47 CTGCGG-----------CT-GTTTTCA----CAGCGAT---TATGATCTT     77
                     ||||||           || ||.||.|    |||||.|   |    ||.|
BL02085___com     35 CTGCGGGAGGCGTTGCACTCGTCTTGATCATCAGCGCTGCCT----TCAT     80

BSNT_03811___     78 TCTG----GCCACAGGGAAAAATAAAGAGCCGGTGAA----------GCA    113
                     .|||    ||     ||||        |||  |||||          || 
BL02085___com     81 GCTGTTAAGC-----GGAA--------AGC--GTGAAACTTCATCCGGC-    114

BSNT_03811___    114 AGCTGTACCA-------------------ACAGA-----GACAGAAAATA    139
                       ||.| |||                   |||||     |||| |.||..
BL02085___com    115 --CTCT-CCATTCCCGAGGAGGCTTCTGCACAGACGTATGACA-AGAAGG    160

BSNT_03811___    140 CAGTGGTAAAGCAGGAAGCAAACAACGACGAGTCAAACGAAACAATTGTG    189
                     ..|.|||.||.|.|||   |||.|.|| ||.|  |||.||..|..||.|.
BL02085___com    161 AGGAGGTGAAACGGGA---AAAAAGCG-CGGG--AAAAGAGGCGGTTATC    204

BSNT_03811___    190 ATAGACATCAAAGGTGCTGTTCAGCATCCTGGCGTTTATGAAATGCGAAC    239
                     ||.||..|.|||||.|||||..|..||||.|||||.|||.||||| .||.
BL02085___com    205 ATCGATTTGAAAGGCGCTGTGAAAAATCCGGGCGTCTATCAAATG-AAAG    253

BSNT_03811___    240 AGGG-GACAGAGT-----ATCTCAGGCAATTG-AGAAAGCGGGCGGGACC    282
                     |||| |||||.||     ||.|      |||| |.|||||.|||||.|||
BL02085___com    254 AGGGAGACAGGGTCCACGATGT------ATTGAAAAAAGCAGGCGGCACC    297

BSNT_03811___    283 -AGTGAACAAGCAGACGAAGCGCAAGTAAATT----TGGCGGAGATTCTG    327
                      || .||.||||.||..||    |||.|||||    |.||.|...||.||
BL02085___com    298 GAG-AAAAAAGCGGATCAA----AAGCAAATTAACCTTGCAGCCGTTTTG    342

BSNT_03811___    328 CAGGACGGGACAGTGGTGTACATCCCGAAAA----AGGGAGAGGAAATAG    373
                     ||||||||.|..|||||.|||||.||    |    ||||.||.|      
BL02085___com    343 CAGGACGGTATGGTGGTTTACATTCC----ATTTGAGGGGGAAG------    382

BSNT_03811___    374 CAGTGCAGCAAGGTGGCGGAGGGTCAGTCCAAAGCGATGG----AGGGAA    419
                               |||..||.||...|...||.||||||  ||    ||||.|
BL02085___com    383 ----------AGGCTGCTGATTCTTTCTCGAAAGCG--GGTTCAAGGGCA    420

BSNT_03811___    420 GGGAGCGC-----------TGGTGAATATCAATACAGCAACCTTAGAGGA    458
                     |...||||           |.||.|||||||||||.||..|||..|||||
BL02085___com    421 GATGGCGCTTCCGTCGATATCGTCAATATCAATACGGCTTCCTCTGAGGA    470

BSNT_03811___    459 GTTACAAGGC-ATCTCAGGGGTGGGGCCATCCAAAGCTGAAGCTATTATT    507
                     |.|.| |||| ||..|.||..|.||.||.||.|||||.|||||..||||.
BL02085___com    471 GCTTC-AGGCGATTCCCGGCATCGGCCCTTCAAAAGCGGAAGCGGTTATC    519

BSNT_03811___    508 GCATACCGGGAAGAAAACGG-GCGTTTCCAAACAATTGAAGATATCACTA    556
                     |.||||||.||.||.||||| .||||| ||.||..|.|||||.||.||.|
BL02085___com    520 GAATACCGCGAGGAGAACGGACCGTTT-CACACGGTAGAAGACATAACAA    568

BSNT_03811___    557 AGGTTTCAGGAATAGGTGAAAAGTCATTTGAGAAAATAAAGTCTTCCATT    606
                     |.|||||.|||||.||.||||||||.|||||.|.||||||.|||.|.||.
BL02085___com    569 ACGTTTCGGGAATTGGAGAAAAGTCTTTTGAAAGAATAAAATCTGCAATC    618

BSNT_03811___    607 ACAGTAAAGTGA    618
                     ||.|||||||.|
BL02085___com    619 ACGGTAAAGTAA    630


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