Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03811 and BL02085
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:52
# Commandline: needle
# -asequence dna-align/BSNT_03811___comEA.1.5803.seq
# -bsequence dna-align/BL02085___comEA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03811___comEA-BL02085___comEA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03811___comEA-BL02085___comEA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03811___comEA
# 2: BL02085___comEA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 712
# Identity: 405/712 (56.9%)
# Similarity: 405/712 (56.9%)
# Gaps: 176/712 (24.7%)
# Score: 1023.5
#
#
#=======================================
BSNT_03811___ 1 ATGA---ATTGGTTGAATCAGCATAAGAAAGCAATTATTTTAGCGGC-TT 46
.||| |||||.|.||.||..|||| || ||| |.
BL02085___com 1 TTGACAGATTGGCTAAAACAATATAA----------AT------GGCATG 34
BSNT_03811___ 47 CTGCGG-----------CT-GTTTTCA----CAGCGAT---TATGATCTT 77
|||||| || ||.||.| |||||.| | ||.|
BL02085___com 35 CTGCGGGAGGCGTTGCACTCGTCTTGATCATCAGCGCTGCCT----TCAT 80
BSNT_03811___ 78 TCTG----GCCACAGGGAAAAATAAAGAGCCGGTGAA----------GCA 113
.||| || |||| ||| ||||| ||
BL02085___com 81 GCTGTTAAGC-----GGAA--------AGC--GTGAAACTTCATCCGGC- 114
BSNT_03811___ 114 AGCTGTACCA-------------------ACAGA-----GACAGAAAATA 139
||.| ||| ||||| |||| |.||..
BL02085___com 115 --CTCT-CCATTCCCGAGGAGGCTTCTGCACAGACGTATGACA-AGAAGG 160
BSNT_03811___ 140 CAGTGGTAAAGCAGGAAGCAAACAACGACGAGTCAAACGAAACAATTGTG 189
..|.|||.||.|.||| |||.|.|| ||.| |||.||..|..||.|.
BL02085___com 161 AGGAGGTGAAACGGGA---AAAAAGCG-CGGG--AAAAGAGGCGGTTATC 204
BSNT_03811___ 190 ATAGACATCAAAGGTGCTGTTCAGCATCCTGGCGTTTATGAAATGCGAAC 239
||.||..|.|||||.|||||..|..||||.|||||.|||.||||| .||.
BL02085___com 205 ATCGATTTGAAAGGCGCTGTGAAAAATCCGGGCGTCTATCAAATG-AAAG 253
BSNT_03811___ 240 AGGG-GACAGAGT-----ATCTCAGGCAATTG-AGAAAGCGGGCGGGACC 282
|||| |||||.|| ||.| |||| |.|||||.|||||.|||
BL02085___com 254 AGGGAGACAGGGTCCACGATGT------ATTGAAAAAAGCAGGCGGCACC 297
BSNT_03811___ 283 -AGTGAACAAGCAGACGAAGCGCAAGTAAATT----TGGCGGAGATTCTG 327
|| .||.||||.||..|| |||.||||| |.||.|...||.||
BL02085___com 298 GAG-AAAAAAGCGGATCAA----AAGCAAATTAACCTTGCAGCCGTTTTG 342
BSNT_03811___ 328 CAGGACGGGACAGTGGTGTACATCCCGAAAA----AGGGAGAGGAAATAG 373
||||||||.|..|||||.|||||.|| | ||||.||.|
BL02085___com 343 CAGGACGGTATGGTGGTTTACATTCC----ATTTGAGGGGGAAG------ 382
BSNT_03811___ 374 CAGTGCAGCAAGGTGGCGGAGGGTCAGTCCAAAGCGATGG----AGGGAA 419
|||..||.||...|...||.|||||| || ||||.|
BL02085___com 383 ----------AGGCTGCTGATTCTTTCTCGAAAGCG--GGTTCAAGGGCA 420
BSNT_03811___ 420 GGGAGCGC-----------TGGTGAATATCAATACAGCAACCTTAGAGGA 458
|...|||| |.||.|||||||||||.||..|||..|||||
BL02085___com 421 GATGGCGCTTCCGTCGATATCGTCAATATCAATACGGCTTCCTCTGAGGA 470
BSNT_03811___ 459 GTTACAAGGC-ATCTCAGGGGTGGGGCCATCCAAAGCTGAAGCTATTATT 507
|.|.| |||| ||..|.||..|.||.||.||.|||||.|||||..||||.
BL02085___com 471 GCTTC-AGGCGATTCCCGGCATCGGCCCTTCAAAAGCGGAAGCGGTTATC 519
BSNT_03811___ 508 GCATACCGGGAAGAAAACGG-GCGTTTCCAAACAATTGAAGATATCACTA 556
|.||||||.||.||.||||| .||||| ||.||..|.|||||.||.||.|
BL02085___com 520 GAATACCGCGAGGAGAACGGACCGTTT-CACACGGTAGAAGACATAACAA 568
BSNT_03811___ 557 AGGTTTCAGGAATAGGTGAAAAGTCATTTGAGAAAATAAAGTCTTCCATT 606
|.|||||.|||||.||.||||||||.|||||.|.||||||.|||.|.||.
BL02085___com 569 ACGTTTCGGGAATTGGAGAAAAGTCTTTTGAAAGAATAAAATCTGCAATC 618
BSNT_03811___ 607 ACAGTAAAGTGA 618
||.|||||||.|
BL02085___com 619 ACGGTAAAGTAA 630
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