Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03990 and BL02037
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:01
# Commandline: needle
# -asequence dna-align/BSNT_03990___yrrC.1.5803.seq
# -bsequence dna-align/BL02037___yrrC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03990___yrrC-BL02037___yrrC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03990___yrrC-BL02037___yrrC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03990___yrrC
# 2: BL02037___yrrC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2442
# Identity: 1819/2442 (74.5%)
# Similarity: 1819/2442 (74.5%)
# Gaps: 87/2442 ( 3.6%)
# Score: 6605.0
#
#
#=======================================
BSNT_03990___ 1 ---GTGCAGCAGCAT---CCGGATCAGCTTAAACTGGAGGAAGAGCCCT- 43
.||||||..||| |||||.|||.|..||.||||.|||| ||
BL02037___yrr 1 GTGATGCAGCGCCATAACCCGGACCAGATCGAAATGGAAGAAG----CTT 46
BSNT_03990___ 44 -ATT--TAAAAGGGACAGTCAAC-ACAGTCATCTATCATAATGACACCAA 89
||| |||||||.||.|| ||| .|.|||||.|||||||||||.||.||
BL02037___yrr 47 CATTTGTAAAAGGAACGGT-AACGGCTGTCATATATCATAATGAAACAAA 95
BSNT_03990___ 90 TTTATATACGGTTCTGAAAGTGAAAGTCACAGAGACCTCCGAAGCCATTG 139
..|.|||||.||.||||||||.|||||...|||.||.||.||..|..|||
BL02037___yrr 96 CCTGTATACCGTACTGAAAGTAAAAGTGGAAGAAACATCAGAGTCTTTTG 145
BSNT_03990___ 140 AAGATAAAGCCGTATCCGTGACGGGCTACTTCCCTGCGCTTCAAGAAGAA 189
||||.|||.||||.||.||.||.||.|||||.|||..|.|.||.|||||.
BL02037___yrr 146 AAGACAAAACCGTTTCTGTCACCGGTTACTTTCCTTTGATCCATGAAGAC 195
BSNT_03990___ 190 GAGACCTACACGTTTTACGGAAAGATCGTAACCCATCCAAAGTTCGGGCT 239
||.|.||||||.|||||||||||.|.||...|||||||.||.||.||.||
BL02037___yrr 196 GATATCTACACATTTTACGGAAAAACCGCCTCCCATCCGAAATTTGGCCT 245
BSNT_03990___ 240 CCAATTTCAGGCGGAGCATTTCAAAAAGGAGATTCCAACGACTAAGGAAG 289
.||||||||.|||||.||||||||||||||..|.||.||.||.||.||||
BL02037___yrr 246 GCAATTTCAAGCGGATCATTTCAAAAAGGAAGTGCCGACAACGAAAGAAG 295
BSNT_03990___ 290 GCATCATTCAATATTTATCGAGTGATTTATTCGAGGGGATCGGCAAAAAA 339
||.|.||.|||||.||..|.||.||||||||.||.||.||||||||.|||
BL02037___yrr 296 GCGTGATCCAATACTTGGCCAGCGATTTATTTGAAGGAATCGGCAAGAAA 345
BSNT_03990___ 340 ACAGCTGAAGAAATTGTGAAAAAGCTGGGCGACAGCGCCATTAATAAAAT 389
||.||.||.||||||||.||.||||||||.||..|.||.||.||.|||||
BL02037___yrr 346 ACGGCCGAGGAAATTGTCAATAAGCTGGGGGAAGGGGCAATCAACAAAAT 395
BSNT_03990___ 390 ATT-GGCTGATGCTTCAGTGCTTTATGATGTTCCCAGACTCTCAAAAAAG 438
.|| .|| ||.|...|.||.||.||||||||.||.|..|||||.|||||.
BL02037___yrr 396 TTTAAGC-GACGGCGCCGTCCTGTATGATGTCCCGAAGCTCTCCAAAAAA 444
BSNT_03990___ 439 AAAGCCGACACGCTGGCTGGCGCATTGCAGCGGCATCAGGGACTGGAGCA 488
||.||.||.|.|||.||.|..||..|.||||.|||||||||.||.|||||
BL02037___yrr 445 AAGGCGGATAAGCTTGCCGCTGCCCTTCAGCAGCATCAGGGGCTCGAGCA 494
BSNT_03990___ 489 AATCATGATTTCCTTGAATCAGTTTGGCTTTGGCCCGCAGCTGTCTATGA 538
.||.|||||.|||||||...|.||.|||||.|||||.||||||||.||||
BL02037___yrr 495 GATTATGATCTCCTTGAGCGAATTCGGCTTCGGCCCCCAGCTGTCCATGA 544
BSNT_03990___ 539 AAATCTATCAAGCCTATGAATCCGAGACGCTTGAAAAGATTCAGGAAAAT 588
||||.|||||.||.||.|||.|.||.|||||.||.||.||.|..||||||
BL02037___yrr 545 AAATTTATCAGGCGTACGAAGCGGAAACGCTCGATAAAATCCGCGAAAAT 594
BSNT_03990___ 589 CCTTATCAGCTTGTGAAGGATGTAGAAGGCATCGGGTTTGGGAAAGCGGA 638
||.||.||||||||.||.|||||.|||||.|||||.|||...|||||.||
BL02037___yrr 595 CCGTACCAGCTTGTCAAAGATGTTGAAGGAATCGGCTTTATCAAAGCAGA 644
BSNT_03990___ 639 TGAGCTGGGCAGCAGAATGGGTCTTTCGGGTAACCATCCTGAGCGGGTAA 688
.||.||||||.||||||||||..|.||.||.||.|||...||||||.|.|
BL02037___yrr 645 CGAACTGGGCGGCAGAATGGGGATCTCAGGCAAACATGAAGAGCGGATCA 694
BSNT_03990___ 689 AAGCTGCTATTTTGTACACGCTTGAAACGACTTGTCTGTC-AGAGGGGCA 737
||||.||.|||||.||||||.|||||.||||.||.|| || |||.|||||
BL02037___yrr 695 AAGCGGCGATTTTATACACGGTTGAAGCGACATGCCT-TCAAGAAGGGCA 743
BSNT_03990___ 738 CACGTACATAGAAACGGAACAGCTGATCATCGACACTCAATCACTGTTAA 787
.|||||||||||||||..||||||.||||||||.||.|||...|||||||
BL02037___yrr 744 TACGTACATAGAAACGAGACAGCTCATCATCGAGACGCAAAAGCTGTTAA 793
BSNT_03990___ 788 ACCAGTCAGCAAGGG------AAGGGCAGCGCATCACAGAAATGGATGCC 831
|||||||||||.|.| ||| |.||.||.|||||||..
BL02037___yrr 794 ACCAGTCAGCAGGCGATGAAAAAG---------TAACCGAGATGGATGTG 834
BSNT_03990___ 832 GCTAACGCGATTATTGCCCTTGGAGAAAATAAAGACATTGTCATAGAAGA 881
||..|||||||.|||.||.|.||.||..|.|||||..|..||||.|||||
BL02037___yrr 835 GCGGACGCGATCATTTCCTTAGGGGAGCAAAAAGAGCTGTTCATTGAAGA 884
BSNT_03990___ 882 TGGCCGCTGTTATTTTCCTTCGCTGTTTTACGCAGAACAAAACGTTGC-- 929
||...|.|||||||.|||.||.||.|..|||||.|||||||.|.||||
BL02037___yrr 885 TGAAAGGTGTTATTATCCGTCCCTTTACTACGCTGAACAAAGCTTTGCCA 934
BSNT_03990___ 930 AAAGCGTG-TGAAACATATCGCTAGCCAAACCGAATATGAGAACCAGTTT 978
||||.||| .|||| |||||..|.||.||||||||.||..||||||||
BL02037___yrr 935 AAAGGGTGCAGAAA---ATCGCCGGACAGACCGAATACGATGACCAGTTT 981
BSNT_03990___ 979 CCCGAATCAGAGTTTTTGCTCGCGTTGGGAGAACTGGAAGAACGGATGAA 1028
||||||||.||.||..|||||||.||.||.||.||.||||||||||||||
BL02037___yrr 982 CCCGAATCGGAATTCCTGCTCGCTTTAGGGGAGCTTGAAGAACGGATGAA 1031
BSNT_03990___ 1029 TGTTCAGTATGCCCCCAGCCAGAAGGAAGCGATTCAAAAAGCCCTTTCCT 1078
.||.|||||.||.||.|||||.||.|||||.||.||||||||.||....|
BL02037___yrr 1032 AGTGCAGTACGCGCCAAGCCAAAAAGAAGCCATACAAAAAGCGCTGATGT 1081
BSNT_03990___ 1079 CGCCGATGCTTCTTTTAACAGGCGGCCCGGGAACAGGAAAAACGACGGTA 1128
||||||||||.|||||.||.|||||.||||||||.||.||||||||.||.
BL02037___yrr 1082 CGCCGATGCTGCTTTTGACGGGCGGACCGGGAACCGGGAAAACGACCGTC 1131
BSNT_03990___ 1129 ATCAGAGGGATTGTCGAGCTCTACGGAGAGCTTCACGGTGTGTCAC---- 1174
|||||.||.||.||||||.|.|||.|.|||||.||||| |
BL02037___yrr 1132 ATCAGGGGAATCGTCGAGTTGTACAGCGAGCTGCACGG-------CTTAA 1174
BSNT_03990___ 1175 ---TAGATCCGTCAGCTTATAAAAAGGATGAAGCTTTTCCGATTGTTTTG 1221
||.|||||.|.|.|||.|||||.||||||.|.||||||.||||..||
BL02037___yrr 1175 GCTTAAATCCGGCTGATTACAAAAAAGATGAAACGTTTCCGTTTGTGCTG 1224
BSNT_03990___ 1222 GCCGCTCCGACAGGGAGAGCAGCAAAACGGATGAGTGAATCAACGGGACT 1271
||.||.|||||.||..|.||.||.||.||||||||.||.||.||.||.||
BL02037___yrr 1225 GCAGCACCGACCGGCCGGGCCGCTAAGCGGATGAGCGAGTCGACCGGTCT 1274
BSNT_03990___ 1272 CCCTGCAGTCACGATACACAGGCTGCTTGGCTGGAACGGTGCTGAAGGCT 1321
.||.||.||.|||||.||||||||.||.|||||||||||.||.|||||.|
BL02037___yrr 1275 GCCGGCCGTTACGATTCACAGGCTTCTCGGCTGGAACGGAGCCGAAGGAT 1324
BSNT_03990___ 1322 TTACTCATACAGAGGATCAGCCGATCGAAGGGAAGCTGTTAATTATCGAT 1371
||||.||....||.||..|.|||||.|||||...||||.|.|||||.|||
BL02037___yrr 1325 TTACGCACGATGAAGACAATCCGATTGAAGGACGGCTGCTCATTATTGAT 1374
BSNT_03990___ 1372 GAAGCCAGTATGCTTGATATATGGCTGGCGAATCATTTGTTCAAGGCGAT 1421
|||.|.||.|||||||||||||||||.||.||.||.||.|||||||||||
BL02037___yrr 1375 GAAACGAGCATGCTTGATATATGGCTTGCCAACCAATTATTCAAGGCGAT 1424
BSNT_03990___ 1422 CCCTGATCATATACAAATCATCATTGTCGGAGACGAAGACCAGCTGCCTT 1471
|||.||||..|||||..|.|||||.||||||||.|||||||||||.||.|
BL02037___yrr 1425 CCCCGATCGGATACAGGTGATCATGGTCGGAGATGAAGACCAGCTTCCGT 1474
BSNT_03990___ 1472 CCGTCGGTCCGGGACAAGTGCTCAGAGACTTGCTGGCATCCCAGGTGATT 1521
||||||||||.|||||.|||||.||.||..||.|||||||..|.||||||
BL02037___yrr 1475 CCGTCGGTCCCGGACAGGTGCTAAGGGATCTGTTGGCATCGAATGTGATT 1524
BSNT_03990___ 1522 CCGACTGTGAGACTGACAGACATCTATCGCCAGGCGGAGGGGTCATCAAT 1571
||..||||.|||.|.||.|||||.||..|.|||||.||.||.||.|||||
BL02037___yrr 1525 CCTTCTGTCAGATTAACCGACATTTACAGACAGGCTGAAGGCTCTTCAAT 1574
BSNT_03990___ 1572 CGTCGAGCTTGCCCACCAGATGAAAAATGGATTGCTGCCGAACAATTTGA 1621
|||.||.||.||.|||.|.||||||.|.|||..|||.|||.|.||.|||.
BL02037___yrr 1575 CGTTGAACTGGCGCACGAAATGAAACAGGGAAAGCTTCCGGAAAACTTGG 1624
BSNT_03990___ 1622 CTGCCCCGACAAAGGACCGTTCCTTTATTCGCTGCGGCGGGTCGCAAATC 1671
|.|||||||||||.||||||||.||||||||||||.||..|..|||.|||
BL02037___yrr 1625 CCGCCCCGACAAAAGACCGTTCTTTTATTCGCTGCCGCCAGCAGCAGATC 1674
BSNT_03990___ 1672 AAAGAAGTAGTTGAGAAGGTTGTCGCCAATGCATTGAAAAAAGGCTATAC 1721
||||||||.||.||.||.||.|||...||.||..||.|||||||.|||.|
BL02037___yrr 1675 AAAGAAGTCGTCGAAAAAGTCGTCAAAAACGCGCTGCAAAAAGGATATTC 1724
BSNT_03990___ 1722 AGCAAAGGACATTCAGGTCCTCGCTCCGATGTACAGAGGAAAAGCCGGCA 1771
.||.|.|||.||||||||..|.||||||||||||||||||...|||||||
BL02037___yrr 1725 GGCCAGGGATATTCAGGTTTTGGCTCCGATGTACAGAGGAGCGGCCGGCA 1774
BSNT_03990___ 1772 TTAATGAATTGAATGTGATGCTGCAGGACATTTTAAATCCTCCTAAAGAA 1821
|.|||||.|||||.|...|..||||||.|||..|.|||||.|| |||
BL02037___yrr 1775 TCAATGAGTTGAACGCCCTTTTGCAGGGCATACTGAATCCGCC----GAA 1820
BSNT_03990___ 1822 ----AAACGGAGAGAATTGAAGTTCGGGGATGTTGTCTACAGAACCGGAG 1867
|||.|.||.|||.||||||.|||.|||||.||.|||.|.|||||||
BL02037___yrr 1821 GCCGAAAGGCAGGGAAATGAAGTACGGAGATGTCGTGTACCGTACCGGAG 1870
BSNT_03990___ 1868 ATAAAATTTTGCAGCTTGTCAATCAGCCGGAAAACAATGTGTTCAACGGA 1917
|||||.|..|.|||||.|||||.||||||||..|.||.|||||.|||||.
BL02037___yrr 1871 ATAAAGTGCTCCAGCTCGTCAACCAGCCGGAGCATAACGTGTTTAACGGT 1920
BSNT_03990___ 1918 GATATTGGCGAAATCACGTCGATATTTTATGCAAAGGAAAATACAGAAAA 1967
||.||.|||||.|||...|||||.||||||||.||.||||||||.|||||
BL02037___yrr 1921 GACATGGGCGAGATCGTCTCGATTTTTTATGCGAAAGAAAATACGGAAAA 1970
BSNT_03990___ 1968 AGAAGACATGGCCGTCGTTTCTTTTGACGGCAATGAAATGACATTTACGA 2017
||||||.||||||||.||.|||||.|||||.||||||||.||.|||.|.|
BL02037___yrr 1971 AGAAGATATGGCCGTTGTCTCTTTCGACGGGAATGAAATCACGTTTGCAA 2020
BSNT_03990___ 2018 AAAAAGATTTTAATCAATTTACCCATGCGTATTGCTGTTCTATTCATAAA 2067
||||||||||.||.||.|||||.||.||.|||||||||||.||.||.|||
BL02037___yrr 2021 AAAAAGATTTCAACCAGTTTACGCACGCCTATTGCTGTTCGATCCACAAA 2070
BSNT_03990___ 2068 TCGCAGGGAAGTGAATTTCCGATTGTGGTTTTGCCTGTTGTGAAAGGCTA 2117
|||||.||.||.|||||||||||.||..|..|.||.||.||.|||.||||
BL02037___yrr 2071 TCGCAAGGCAGCGAATTTCCGATCGTCATCCTTCCGGTCGTCAAAAGCTA 2120
BSNT_03990___ 2118 TTATAGAATGCTCAGAAGAAACCTTCTTTATACCGCGATTACAAG-AGCG 2166
|||..|.|||||.|||||.|||.|.|||||.||.||.|||||||| |||
BL02037___yrr 2121 TTACCGGATGCTGAGAAGGAACTTGCTTTACACGGCTATTACAAGAAGC- 2169
BSNT_03990___ 2167 AAGAAATTTCTCATTTTATGCGGGGAAGAGGAGGCGCTGGAGTGGGGCGT 2216
||.|||||.||.|||.|.|||||.||||||||.||.||.||.||||||||
BL02037___yrr 2170 AAAAAATTCCTGATTCTGTGCGGCGAAGAGGAAGCCCTTGAATGGGGCGT 2219
BSNT_03990___ 2217 GAAAAATAATGATGCAACTGTCAGA----CAGACCTC-CTTGAAAAACAG 2261
|||||||||.||..|| ||||| |||||.|| |||.|||.|| |
BL02037___yrr 2220 GAAAAATAAGGAATCA----TCAGAAAGGCAGACATCGCTTAAAAGAC-G 2264
BSNT_03990___ 2262 GCTGTCCGTACAGGTTG---AGGAAATGGATGCCGAGCT--TGAAGCTTT 2306
||| ||.| ||||..| |.|||..|||||..||||| ||..||||
BL02037___yrr 2265 GCT-TCAG--CAGGCGGCACATGAAGAGGATGAAGAGCTCATGGCGCTT- 2310
BSNT_03990___ 2307 GCAAAAAGAGCTCCCGTTCAGCGTACACGACGCCAACATTGGCATGGAAG 2356
|||||||||||.||.||||||||..|.||||||||.||.||.|||||||
BL02037___yrr 2311 -CAAAAAGAGCTGCCATTCAGCGTCTATGACGCCAATATCGGGATGGAAG 2359
BSNT_03990___ 2357 GCATTACACCATTCGATTTTATGAAAGAAGAA-CAGCAATAA 2397
||||||||||.||.|||||||||.||.|.||| ||| |||||
BL02037___yrr 2360 GCATTACACCTTTTGATTTTATGGAAAAGGAAGCAG-AATAA 2400
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