Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03990 and BL02037

See Amino acid alignment / Visit BSNT_03990 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:01
# Commandline: needle
#    -asequence dna-align/BSNT_03990___yrrC.1.5803.seq
#    -bsequence dna-align/BL02037___yrrC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03990___yrrC-BL02037___yrrC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03990___yrrC-BL02037___yrrC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03990___yrrC
# 2: BL02037___yrrC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2442
# Identity:    1819/2442 (74.5%)
# Similarity:  1819/2442 (74.5%)
# Gaps:          87/2442 ( 3.6%)
# Score: 6605.0
# 
#
#=======================================

BSNT_03990___      1 ---GTGCAGCAGCAT---CCGGATCAGCTTAAACTGGAGGAAGAGCCCT-     43
                        .||||||..|||   |||||.|||.|..||.||||.||||    || 
BL02037___yrr      1 GTGATGCAGCGCCATAACCCGGACCAGATCGAAATGGAAGAAG----CTT     46

BSNT_03990___     44 -ATT--TAAAAGGGACAGTCAAC-ACAGTCATCTATCATAATGACACCAA     89
                      |||  |||||||.||.|| ||| .|.|||||.|||||||||||.||.||
BL02037___yrr     47 CATTTGTAAAAGGAACGGT-AACGGCTGTCATATATCATAATGAAACAAA     95

BSNT_03990___     90 TTTATATACGGTTCTGAAAGTGAAAGTCACAGAGACCTCCGAAGCCATTG    139
                     ..|.|||||.||.||||||||.|||||...|||.||.||.||..|..|||
BL02037___yrr     96 CCTGTATACCGTACTGAAAGTAAAAGTGGAAGAAACATCAGAGTCTTTTG    145

BSNT_03990___    140 AAGATAAAGCCGTATCCGTGACGGGCTACTTCCCTGCGCTTCAAGAAGAA    189
                     ||||.|||.||||.||.||.||.||.|||||.|||..|.|.||.|||||.
BL02037___yrr    146 AAGACAAAACCGTTTCTGTCACCGGTTACTTTCCTTTGATCCATGAAGAC    195

BSNT_03990___    190 GAGACCTACACGTTTTACGGAAAGATCGTAACCCATCCAAAGTTCGGGCT    239
                     ||.|.||||||.|||||||||||.|.||...|||||||.||.||.||.||
BL02037___yrr    196 GATATCTACACATTTTACGGAAAAACCGCCTCCCATCCGAAATTTGGCCT    245

BSNT_03990___    240 CCAATTTCAGGCGGAGCATTTCAAAAAGGAGATTCCAACGACTAAGGAAG    289
                     .||||||||.|||||.||||||||||||||..|.||.||.||.||.||||
BL02037___yrr    246 GCAATTTCAAGCGGATCATTTCAAAAAGGAAGTGCCGACAACGAAAGAAG    295

BSNT_03990___    290 GCATCATTCAATATTTATCGAGTGATTTATTCGAGGGGATCGGCAAAAAA    339
                     ||.|.||.|||||.||..|.||.||||||||.||.||.||||||||.|||
BL02037___yrr    296 GCGTGATCCAATACTTGGCCAGCGATTTATTTGAAGGAATCGGCAAGAAA    345

BSNT_03990___    340 ACAGCTGAAGAAATTGTGAAAAAGCTGGGCGACAGCGCCATTAATAAAAT    389
                     ||.||.||.||||||||.||.||||||||.||..|.||.||.||.|||||
BL02037___yrr    346 ACGGCCGAGGAAATTGTCAATAAGCTGGGGGAAGGGGCAATCAACAAAAT    395

BSNT_03990___    390 ATT-GGCTGATGCTTCAGTGCTTTATGATGTTCCCAGACTCTCAAAAAAG    438
                     .|| .|| ||.|...|.||.||.||||||||.||.|..|||||.|||||.
BL02037___yrr    396 TTTAAGC-GACGGCGCCGTCCTGTATGATGTCCCGAAGCTCTCCAAAAAA    444

BSNT_03990___    439 AAAGCCGACACGCTGGCTGGCGCATTGCAGCGGCATCAGGGACTGGAGCA    488
                     ||.||.||.|.|||.||.|..||..|.||||.|||||||||.||.|||||
BL02037___yrr    445 AAGGCGGATAAGCTTGCCGCTGCCCTTCAGCAGCATCAGGGGCTCGAGCA    494

BSNT_03990___    489 AATCATGATTTCCTTGAATCAGTTTGGCTTTGGCCCGCAGCTGTCTATGA    538
                     .||.|||||.|||||||...|.||.|||||.|||||.||||||||.||||
BL02037___yrr    495 GATTATGATCTCCTTGAGCGAATTCGGCTTCGGCCCCCAGCTGTCCATGA    544

BSNT_03990___    539 AAATCTATCAAGCCTATGAATCCGAGACGCTTGAAAAGATTCAGGAAAAT    588
                     ||||.|||||.||.||.|||.|.||.|||||.||.||.||.|..||||||
BL02037___yrr    545 AAATTTATCAGGCGTACGAAGCGGAAACGCTCGATAAAATCCGCGAAAAT    594

BSNT_03990___    589 CCTTATCAGCTTGTGAAGGATGTAGAAGGCATCGGGTTTGGGAAAGCGGA    638
                     ||.||.||||||||.||.|||||.|||||.|||||.|||...|||||.||
BL02037___yrr    595 CCGTACCAGCTTGTCAAAGATGTTGAAGGAATCGGCTTTATCAAAGCAGA    644

BSNT_03990___    639 TGAGCTGGGCAGCAGAATGGGTCTTTCGGGTAACCATCCTGAGCGGGTAA    688
                     .||.||||||.||||||||||..|.||.||.||.|||...||||||.|.|
BL02037___yrr    645 CGAACTGGGCGGCAGAATGGGGATCTCAGGCAAACATGAAGAGCGGATCA    694

BSNT_03990___    689 AAGCTGCTATTTTGTACACGCTTGAAACGACTTGTCTGTC-AGAGGGGCA    737
                     ||||.||.|||||.||||||.|||||.||||.||.|| || |||.|||||
BL02037___yrr    695 AAGCGGCGATTTTATACACGGTTGAAGCGACATGCCT-TCAAGAAGGGCA    743

BSNT_03990___    738 CACGTACATAGAAACGGAACAGCTGATCATCGACACTCAATCACTGTTAA    787
                     .|||||||||||||||..||||||.||||||||.||.|||...|||||||
BL02037___yrr    744 TACGTACATAGAAACGAGACAGCTCATCATCGAGACGCAAAAGCTGTTAA    793

BSNT_03990___    788 ACCAGTCAGCAAGGG------AAGGGCAGCGCATCACAGAAATGGATGCC    831
                     |||||||||||.|.|      |||         |.||.||.|||||||..
BL02037___yrr    794 ACCAGTCAGCAGGCGATGAAAAAG---------TAACCGAGATGGATGTG    834

BSNT_03990___    832 GCTAACGCGATTATTGCCCTTGGAGAAAATAAAGACATTGTCATAGAAGA    881
                     ||..|||||||.|||.||.|.||.||..|.|||||..|..||||.|||||
BL02037___yrr    835 GCGGACGCGATCATTTCCTTAGGGGAGCAAAAAGAGCTGTTCATTGAAGA    884

BSNT_03990___    882 TGGCCGCTGTTATTTTCCTTCGCTGTTTTACGCAGAACAAAACGTTGC--    929
                     ||...|.|||||||.|||.||.||.|..|||||.|||||||.|.||||  
BL02037___yrr    885 TGAAAGGTGTTATTATCCGTCCCTTTACTACGCTGAACAAAGCTTTGCCA    934

BSNT_03990___    930 AAAGCGTG-TGAAACATATCGCTAGCCAAACCGAATATGAGAACCAGTTT    978
                     ||||.||| .||||   |||||..|.||.||||||||.||..||||||||
BL02037___yrr    935 AAAGGGTGCAGAAA---ATCGCCGGACAGACCGAATACGATGACCAGTTT    981

BSNT_03990___    979 CCCGAATCAGAGTTTTTGCTCGCGTTGGGAGAACTGGAAGAACGGATGAA   1028
                     ||||||||.||.||..|||||||.||.||.||.||.||||||||||||||
BL02037___yrr    982 CCCGAATCGGAATTCCTGCTCGCTTTAGGGGAGCTTGAAGAACGGATGAA   1031

BSNT_03990___   1029 TGTTCAGTATGCCCCCAGCCAGAAGGAAGCGATTCAAAAAGCCCTTTCCT   1078
                     .||.|||||.||.||.|||||.||.|||||.||.||||||||.||....|
BL02037___yrr   1032 AGTGCAGTACGCGCCAAGCCAAAAAGAAGCCATACAAAAAGCGCTGATGT   1081

BSNT_03990___   1079 CGCCGATGCTTCTTTTAACAGGCGGCCCGGGAACAGGAAAAACGACGGTA   1128
                     ||||||||||.|||||.||.|||||.||||||||.||.||||||||.||.
BL02037___yrr   1082 CGCCGATGCTGCTTTTGACGGGCGGACCGGGAACCGGGAAAACGACCGTC   1131

BSNT_03990___   1129 ATCAGAGGGATTGTCGAGCTCTACGGAGAGCTTCACGGTGTGTCAC----   1174
                     |||||.||.||.||||||.|.|||.|.|||||.|||||       |    
BL02037___yrr   1132 ATCAGGGGAATCGTCGAGTTGTACAGCGAGCTGCACGG-------CTTAA   1174

BSNT_03990___   1175 ---TAGATCCGTCAGCTTATAAAAAGGATGAAGCTTTTCCGATTGTTTTG   1221
                        ||.|||||.|.|.|||.|||||.||||||.|.||||||.||||..||
BL02037___yrr   1175 GCTTAAATCCGGCTGATTACAAAAAAGATGAAACGTTTCCGTTTGTGCTG   1224

BSNT_03990___   1222 GCCGCTCCGACAGGGAGAGCAGCAAAACGGATGAGTGAATCAACGGGACT   1271
                     ||.||.|||||.||..|.||.||.||.||||||||.||.||.||.||.||
BL02037___yrr   1225 GCAGCACCGACCGGCCGGGCCGCTAAGCGGATGAGCGAGTCGACCGGTCT   1274

BSNT_03990___   1272 CCCTGCAGTCACGATACACAGGCTGCTTGGCTGGAACGGTGCTGAAGGCT   1321
                     .||.||.||.|||||.||||||||.||.|||||||||||.||.|||||.|
BL02037___yrr   1275 GCCGGCCGTTACGATTCACAGGCTTCTCGGCTGGAACGGAGCCGAAGGAT   1324

BSNT_03990___   1322 TTACTCATACAGAGGATCAGCCGATCGAAGGGAAGCTGTTAATTATCGAT   1371
                     ||||.||....||.||..|.|||||.|||||...||||.|.|||||.|||
BL02037___yrr   1325 TTACGCACGATGAAGACAATCCGATTGAAGGACGGCTGCTCATTATTGAT   1374

BSNT_03990___   1372 GAAGCCAGTATGCTTGATATATGGCTGGCGAATCATTTGTTCAAGGCGAT   1421
                     |||.|.||.|||||||||||||||||.||.||.||.||.|||||||||||
BL02037___yrr   1375 GAAACGAGCATGCTTGATATATGGCTTGCCAACCAATTATTCAAGGCGAT   1424

BSNT_03990___   1422 CCCTGATCATATACAAATCATCATTGTCGGAGACGAAGACCAGCTGCCTT   1471
                     |||.||||..|||||..|.|||||.||||||||.|||||||||||.||.|
BL02037___yrr   1425 CCCCGATCGGATACAGGTGATCATGGTCGGAGATGAAGACCAGCTTCCGT   1474

BSNT_03990___   1472 CCGTCGGTCCGGGACAAGTGCTCAGAGACTTGCTGGCATCCCAGGTGATT   1521
                     ||||||||||.|||||.|||||.||.||..||.|||||||..|.||||||
BL02037___yrr   1475 CCGTCGGTCCCGGACAGGTGCTAAGGGATCTGTTGGCATCGAATGTGATT   1524

BSNT_03990___   1522 CCGACTGTGAGACTGACAGACATCTATCGCCAGGCGGAGGGGTCATCAAT   1571
                     ||..||||.|||.|.||.|||||.||..|.|||||.||.||.||.|||||
BL02037___yrr   1525 CCTTCTGTCAGATTAACCGACATTTACAGACAGGCTGAAGGCTCTTCAAT   1574

BSNT_03990___   1572 CGTCGAGCTTGCCCACCAGATGAAAAATGGATTGCTGCCGAACAATTTGA   1621
                     |||.||.||.||.|||.|.||||||.|.|||..|||.|||.|.||.|||.
BL02037___yrr   1575 CGTTGAACTGGCGCACGAAATGAAACAGGGAAAGCTTCCGGAAAACTTGG   1624

BSNT_03990___   1622 CTGCCCCGACAAAGGACCGTTCCTTTATTCGCTGCGGCGGGTCGCAAATC   1671
                     |.|||||||||||.||||||||.||||||||||||.||..|..|||.|||
BL02037___yrr   1625 CCGCCCCGACAAAAGACCGTTCTTTTATTCGCTGCCGCCAGCAGCAGATC   1674

BSNT_03990___   1672 AAAGAAGTAGTTGAGAAGGTTGTCGCCAATGCATTGAAAAAAGGCTATAC   1721
                     ||||||||.||.||.||.||.|||...||.||..||.|||||||.|||.|
BL02037___yrr   1675 AAAGAAGTCGTCGAAAAAGTCGTCAAAAACGCGCTGCAAAAAGGATATTC   1724

BSNT_03990___   1722 AGCAAAGGACATTCAGGTCCTCGCTCCGATGTACAGAGGAAAAGCCGGCA   1771
                     .||.|.|||.||||||||..|.||||||||||||||||||...|||||||
BL02037___yrr   1725 GGCCAGGGATATTCAGGTTTTGGCTCCGATGTACAGAGGAGCGGCCGGCA   1774

BSNT_03990___   1772 TTAATGAATTGAATGTGATGCTGCAGGACATTTTAAATCCTCCTAAAGAA   1821
                     |.|||||.|||||.|...|..||||||.|||..|.|||||.||    |||
BL02037___yrr   1775 TCAATGAGTTGAACGCCCTTTTGCAGGGCATACTGAATCCGCC----GAA   1820

BSNT_03990___   1822 ----AAACGGAGAGAATTGAAGTTCGGGGATGTTGTCTACAGAACCGGAG   1867
                         |||.|.||.|||.||||||.|||.|||||.||.|||.|.|||||||
BL02037___yrr   1821 GCCGAAAGGCAGGGAAATGAAGTACGGAGATGTCGTGTACCGTACCGGAG   1870

BSNT_03990___   1868 ATAAAATTTTGCAGCTTGTCAATCAGCCGGAAAACAATGTGTTCAACGGA   1917
                     |||||.|..|.|||||.|||||.||||||||..|.||.|||||.|||||.
BL02037___yrr   1871 ATAAAGTGCTCCAGCTCGTCAACCAGCCGGAGCATAACGTGTTTAACGGT   1920

BSNT_03990___   1918 GATATTGGCGAAATCACGTCGATATTTTATGCAAAGGAAAATACAGAAAA   1967
                     ||.||.|||||.|||...|||||.||||||||.||.||||||||.|||||
BL02037___yrr   1921 GACATGGGCGAGATCGTCTCGATTTTTTATGCGAAAGAAAATACGGAAAA   1970

BSNT_03990___   1968 AGAAGACATGGCCGTCGTTTCTTTTGACGGCAATGAAATGACATTTACGA   2017
                     ||||||.||||||||.||.|||||.|||||.||||||||.||.|||.|.|
BL02037___yrr   1971 AGAAGATATGGCCGTTGTCTCTTTCGACGGGAATGAAATCACGTTTGCAA   2020

BSNT_03990___   2018 AAAAAGATTTTAATCAATTTACCCATGCGTATTGCTGTTCTATTCATAAA   2067
                     ||||||||||.||.||.|||||.||.||.|||||||||||.||.||.|||
BL02037___yrr   2021 AAAAAGATTTCAACCAGTTTACGCACGCCTATTGCTGTTCGATCCACAAA   2070

BSNT_03990___   2068 TCGCAGGGAAGTGAATTTCCGATTGTGGTTTTGCCTGTTGTGAAAGGCTA   2117
                     |||||.||.||.|||||||||||.||..|..|.||.||.||.|||.||||
BL02037___yrr   2071 TCGCAAGGCAGCGAATTTCCGATCGTCATCCTTCCGGTCGTCAAAAGCTA   2120

BSNT_03990___   2118 TTATAGAATGCTCAGAAGAAACCTTCTTTATACCGCGATTACAAG-AGCG   2166
                     |||..|.|||||.|||||.|||.|.|||||.||.||.|||||||| ||| 
BL02037___yrr   2121 TTACCGGATGCTGAGAAGGAACTTGCTTTACACGGCTATTACAAGAAGC-   2169

BSNT_03990___   2167 AAGAAATTTCTCATTTTATGCGGGGAAGAGGAGGCGCTGGAGTGGGGCGT   2216
                     ||.|||||.||.|||.|.|||||.||||||||.||.||.||.||||||||
BL02037___yrr   2170 AAAAAATTCCTGATTCTGTGCGGCGAAGAGGAAGCCCTTGAATGGGGCGT   2219

BSNT_03990___   2217 GAAAAATAATGATGCAACTGTCAGA----CAGACCTC-CTTGAAAAACAG   2261
                     |||||||||.||..||    |||||    |||||.|| |||.|||.|| |
BL02037___yrr   2220 GAAAAATAAGGAATCA----TCAGAAAGGCAGACATCGCTTAAAAGAC-G   2264

BSNT_03990___   2262 GCTGTCCGTACAGGTTG---AGGAAATGGATGCCGAGCT--TGAAGCTTT   2306
                     ||| ||.|  ||||..|   |.|||..|||||..|||||  ||..|||| 
BL02037___yrr   2265 GCT-TCAG--CAGGCGGCACATGAAGAGGATGAAGAGCTCATGGCGCTT-   2310

BSNT_03990___   2307 GCAAAAAGAGCTCCCGTTCAGCGTACACGACGCCAACATTGGCATGGAAG   2356
                      |||||||||||.||.||||||||..|.||||||||.||.||.|||||||
BL02037___yrr   2311 -CAAAAAGAGCTGCCATTCAGCGTCTATGACGCCAATATCGGGATGGAAG   2359

BSNT_03990___   2357 GCATTACACCATTCGATTTTATGAAAGAAGAA-CAGCAATAA   2397
                     ||||||||||.||.|||||||||.||.|.||| ||| |||||
BL02037___yrr   2360 GCATTACACCTTTTGATTTTATGGAAAAGGAAGCAG-AATAA   2400


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