Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03988 and BL02036
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:01
# Commandline: needle
# -asequence dna-align/BSNT_03988.1.5803.seq
# -bsequence dna-align/BL02036___yrrD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03988-BL02036___yrrD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03988-BL02036___yrrD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03988
# 2: BL02036___yrrD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 529
# Identity: 306/529 (57.8%)
# Similarity: 306/529 (57.8%)
# Gaps: 128/529 (24.2%)
# Score: 858.0
#
#
#=======================================
BSNT_03988 1 TTGAGAACATGCCATGAAGTAGAAGGATTCCCAGTATAC-TCAGAACGAA 49
||||||||||||.||||..|.||||||.||...||.||| .||||..|
BL02036___yrr 1 TTGAGAACATGCAATGAGCTGGAAGGACTCAATGTTTACGACAGACAG-- 48
BSNT_03988 50 CTTCTTGTTATCTC------GGGGCAATTTCCGATATTTGTTTTTCTC-T 92
|.||.|||| ||||...|..|.|||||.|||||||||| .
BL02036___yrr 49 -----TCTTCTCTCCCGCTTGGGGTGGTAACGGATATCTGTTTTTCTCAC 93
BSNT_03988 93 GAAAGGAGATTGTCTTGGGTTTATTCTTGCACAAAA---ACGCTTTTTGC 139
|||.|||.| |||||.||.||.|||.|.|.|.|.|| .|||||||
BL02036___yrr 94 GAAGGGACA-TGTCTCGGATTGATTATGGAAGAGAAGCGGCGCTTTT--- 139
BSNT_03988 140 ATCATCATCATACGCTATTACGGGCGTGTGATATCTCTTCCATTCTT--- 186
|..|||..|.|.|||| |||||| .|||
BL02036___yrr 140 ACAATCCCCGTTCGCT-------------------TCTTCC--GCTTCCC 168
BSNT_03988 187 ----------------GA--TGACCGCATA----TTGGCTTCGGTCAGTT 214
|| ||||.||.|| |||..|||....||||
BL02036___yrr 169 GCGGTCACCGAAATCGGACGTGACGGCGTATACGTTGATTTCACCGAGTT 218
BSNT_03988 215 CAGAACAGCTTTTGCCTCTTCCGA-----AATCATGCTTCACATACGAGC 259
|| |||...|||...|||||| |.||.|.|| ||.||.|
BL02036___yrr 219 CA----AGCCGATGCAAGTTCCGAAGCAGAGTCTTTCT-----TATGACC 259
BSNT_03988 260 AGATGAAGATGAAGCTTGTGAAATCGCAA--GAG--GGCGATATATTGGG 305
||||||||...||..|.||.||| || ||| ||.||||...||||
BL02036___yrr 260 AGATGAAGCAAAAAATGGTCAAA----AACGGAGCAGGAGATACGCTGGG 305
BSNT_03988 306 GATGCTGGAAGATGTATACTTTTGTTTGGACAGGGGCATAATCGTAGCAT 355
.||||||||||||||||||||||.||..||||.|||||||||||||||||
BL02036___yrr 306 CATGCTGGAAGATGTATACTTTTCTTCCGACACGGGCATAATCGTAGCAT 355
BSNT_03988 356 ATGAACTCTCGGACGGTTTCTTTTCTGACCTGGCGGGAAGCAAGCGCCAG 405
|||||||.||.||||||||.|||.|.||..|| .||.|||
BL02036___yrr 356 ATGAACTATCAGACGGTTTTTTTGCCGATTTG-------TCAGGCG---- 394
BSNT_03988 406 ATCCAAAGAGCGGATTCGCTTGTCGAGGTGCGGAA--------------- 440
.||||.|||.|||||.||..|| ||.||||
BL02036___yrr 395 --ACAAAAAGCAGATTCACTCATC----TGGGGAACCGCTTGAAGTAGGC 438
BSNT_03988 441 AGACGAG----ATCGTTCTGAACGGATAG 465
||| || |||||..||||||.|||.
BL02036___yrr 439 AGA--AGCACAATCGTCTTGAACGAATAA 465
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