Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03988 and BL02036

See Amino acid alignment / Visit BSNT_03988 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:01
# Commandline: needle
#    -asequence dna-align/BSNT_03988.1.5803.seq
#    -bsequence dna-align/BL02036___yrrD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03988-BL02036___yrrD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03988-BL02036___yrrD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03988
# 2: BL02036___yrrD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 529
# Identity:     306/529 (57.8%)
# Similarity:   306/529 (57.8%)
# Gaps:         128/529 (24.2%)
# Score: 858.0
# 
#
#=======================================

BSNT_03988         1 TTGAGAACATGCCATGAAGTAGAAGGATTCCCAGTATAC-TCAGAACGAA     49
                     ||||||||||||.||||..|.||||||.||...||.||| .||||..|  
BL02036___yrr      1 TTGAGAACATGCAATGAGCTGGAAGGACTCAATGTTTACGACAGACAG--     48

BSNT_03988        50 CTTCTTGTTATCTC------GGGGCAATTTCCGATATTTGTTTTTCTC-T     92
                          |.||.||||      ||||...|..|.|||||.|||||||||| .
BL02036___yrr     49 -----TCTTCTCTCCCGCTTGGGGTGGTAACGGATATCTGTTTTTCTCAC     93

BSNT_03988        93 GAAAGGAGATTGTCTTGGGTTTATTCTTGCACAAAA---ACGCTTTTTGC    139
                     |||.|||.| |||||.||.||.|||.|.|.|.|.||   .|||||||   
BL02036___yrr     94 GAAGGGACA-TGTCTCGGATTGATTATGGAAGAGAAGCGGCGCTTTT---    139

BSNT_03988       140 ATCATCATCATACGCTATTACGGGCGTGTGATATCTCTTCCATTCTT---    186
                     |..|||..|.|.||||                   ||||||  .|||   
BL02036___yrr    140 ACAATCCCCGTTCGCT-------------------TCTTCC--GCTTCCC    168

BSNT_03988       187 ----------------GA--TGACCGCATA----TTGGCTTCGGTCAGTT    214
                                     ||  ||||.||.||    |||..|||....||||
BL02036___yrr    169 GCGGTCACCGAAATCGGACGTGACGGCGTATACGTTGATTTCACCGAGTT    218

BSNT_03988       215 CAGAACAGCTTTTGCCTCTTCCGA-----AATCATGCTTCACATACGAGC    259
                     ||    |||...|||...||||||     |.||.|.||     ||.||.|
BL02036___yrr    219 CA----AGCCGATGCAAGTTCCGAAGCAGAGTCTTTCT-----TATGACC    259

BSNT_03988       260 AGATGAAGATGAAGCTTGTGAAATCGCAA--GAG--GGCGATATATTGGG    305
                     ||||||||...||..|.||.|||    ||  |||  ||.||||...||||
BL02036___yrr    260 AGATGAAGCAAAAAATGGTCAAA----AACGGAGCAGGAGATACGCTGGG    305

BSNT_03988       306 GATGCTGGAAGATGTATACTTTTGTTTGGACAGGGGCATAATCGTAGCAT    355
                     .||||||||||||||||||||||.||..||||.|||||||||||||||||
BL02036___yrr    306 CATGCTGGAAGATGTATACTTTTCTTCCGACACGGGCATAATCGTAGCAT    355

BSNT_03988       356 ATGAACTCTCGGACGGTTTCTTTTCTGACCTGGCGGGAAGCAAGCGCCAG    405
                     |||||||.||.||||||||.|||.|.||..||       .||.|||    
BL02036___yrr    356 ATGAACTATCAGACGGTTTTTTTGCCGATTTG-------TCAGGCG----    394

BSNT_03988       406 ATCCAAAGAGCGGATTCGCTTGTCGAGGTGCGGAA---------------    440
                       .||||.|||.|||||.||..||    ||.||||               
BL02036___yrr    395 --ACAAAAAGCAGATTCACTCATC----TGGGGAACCGCTTGAAGTAGGC    438

BSNT_03988       441 AGACGAG----ATCGTTCTGAACGGATAG    465
                     |||  ||    |||||..||||||.|||.
BL02036___yrr    439 AGA--AGCACAATCGTCTTGAACGAATAA    465


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