Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03973 and BL02029
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:00
# Commandline: needle
# -asequence dna-align/BSNT_03973___yrrL.1.5803.seq
# -bsequence dna-align/BL02029___yrrL.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03973___yrrL-BL02029___yrrL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03973___yrrL-BL02029___yrrL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03973___yrrL
# 2: BL02029___yrrL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1164
# Identity: 755/1164 (64.9%)
# Similarity: 755/1164 (64.9%)
# Gaps: 132/1164 (11.3%)
# Score: 2173.5
#
#
#=======================================
BSNT_03973___ 1 ATGTATATCAATCAGCAAAAAAAATCGTTTTTTAATAAAAAAA-----GA 45
||||.|....|||||..|||.|||.||||| |||||||.| .|
BL02029___yrr 1 ATGTTTGAAGATCAGACAAAGAAACCGTTT----ATAAAAAGACTCCTTA 46
BSNT_03973___ 46 ATCATA--------------CTGTCTTCCATT---GTTGTGCTGTTTCTC 78
|.|||| |||.||....|| |||.|||||.||.|.
BL02029___yrr 47 AACATAAAATAAAGTTTTGGCTGACTGTGGTTGCGGTTCTGCTGATTTTA 96
BSNT_03973___ 79 ATCATTGGC-GGGGCATTTT---TATATGGGAAATCATTGCTTGAACCTG 124
|.| || ||.||..||| |.||.|..|||||...|||.|||||.|
BL02029___yrr 97 ACC----GCAGGCGCTGTTTCGCTCTACGTTAAATCGGCGCTCGAACCGG 142
BSNT_03973___ 125 TTGAAAAAGACAGT---AAAACGACAGTTAATATTAACATTCCGAGCGGT 171
|.||.|||.|.|.| |||||| ||.|||.|..|.||||||...||.
BL02029___yrr 143 TCGATAAAAATAATGCAAAAACG---GTCAATGTCTATATTCCGGAAGGA 189
BSNT_03973___ 172 TCGTCTGTTTCAGCCATCGCATCGATATTAAAGAAAAATGATGTCATAAA 221
|||.|.|||.|..|||||||..|.|.|.|.||.|||.|.||..|.||.||
BL02029___yrr 190 TCGACCGTTACGTCCATCGCCGCCAAACTGAAAAAAGAGGACCTAATTAA 239
BSNT_03973___ 222 AAGCGAGAAGGCGTTTCAGTA--------CTATGTGAAATATAAAGGTGC 263
||..||.|| |||| .||||||||||.||||..|||
BL02029___yrr 240 AAATGAAAA--------AGTATTTATCGCTTATGTGAAATTTAAAAATGC 281
BSNT_03973___ 264 TTCCGGGTTTCAGGCCGGATTCTACCATCTAAATAAAGGT--ATGGATTT 311
.|||||.|||||.||.||...||..||.||.|...| || ||||||..
BL02029___yrr 282 CTCCGGCTTTCAAGCGGGGAACTTTCAGCTCAGCCA--GTCGATGGATGC 329
BSNT_03973___ 312 AGATGCCATTATTCAGAAGCTGACAAGTGGGGCT--ACAGGTTAC-GCTT 358
.|..|.|||.|||.|.|||||||||| ..||| |||.||..| ||.|
BL02029___yrr 330 GGCAGGCATGATTAATAAGCTGACAA---CCGCTTCACATGTGCCGGCAT 376
BSNT_03973___ 359 TTCAAATCACAGTGACTGAGGGAGCACAGCTGACCC---AAATCGC-GGC 404
||.||||.||.||..||||.|||...||||| || ||||||| |.|
BL02029___yrr 377 TTAAAATTACCGTTCCTGAAGGAAGGCAGCT---CCAGGAAATCGCAGAC 423
BSNT_03973___ 405 TGCTATTGCTGATGAAACAAAATACTC--TAAAAAACAAGTCATAGCGAA 452
..| ||.||.|...||||.||.||||| .|||..||| |.||....||
BL02029___yrr 424 ATC-ATCGCCGGACAAACGAACTACTCGGCAAAGGACA--TTATGAAAAA 470
BSNT_03973___ 453 GCTGGACGATGAAA---CATTTATCAATCAGCTGAAGAAAGAATTCCCGG 499
|||| |||||.| .|||.||| |.|.|.|.||.|.||||.|..|.|
BL02029___yrr 471 GCTG---GATGACAGGGAATTCATC-AGCCGATTAAAACAGAAGTATCCG 516
BSNT_03973___ 500 ACACTG-TGACAAATGATGTTTTCAATAAAAACATTAAGCACCCGCTTGA 548
|.|||| |.|||.|.||.||.||.||.||.|||||.|||||.|||||.||
BL02029___yrr 517 AAACTGATCACAGACGACGTGTTGAACAAGAACATCAAGCATCCGCTCGA 566
BSNT_03973___ 549 AGGGTACCT--ATTCCCGGCTACATACCCTTTTAACGATCCGGACACATC 596
|||.||||| || ||.||.|||||.||.|||.||||.||.||.||...
BL02029___yrr 567 AGGATACCTGCAT--CCTGCGACATATCCATTTTACGACCCTGAGACGAA 614
BSNT_03973___ 597 ACTTGAAGACATTATCAAGGCAATGATTAAGCAGACAAATTCTTATGTG- 645
.|||||.|.|||||||.|.||.|||||.||.||.|||.| |.|..||
BL02029___yrr 615 GCTTGATGCCATTATCGAAGCGATGATCAAACAAACAGA---TCAGCTGG 661
BSNT_03973___ 646 --GAAACATAT--AAATCAGAAATG-AAGAAAAACAAAG-TTTCTGTGCA 689
||||..||| |||.||| ||| ||||.|| |||| |.||.||.||
BL02029___yrr 662 CTGAAAAGTATGAAAAGCAG--ATGAAAGACAA--AAAGATGTCCGTCCA 707
BSNT_03973___ 690 TAAGCTGC--TGACAATGGCTTCTTTGATAGAAGAAGAAGCGACTGAAAA 737
.|| .|| ||||.||||||||.||.||.|||||||||||.||.|||||
BL02029___yrr 708 CAA--AGCCTTGACGATGGCTTCGTTAATTGAAGAAGAAGCTACCGAAAA 755
BSNT_03973___ 738 AGCCGACCGCCATAAAATTGCGAGCGTCTTTTATAACCGCCTGAAAAAGA 787
|||.|||||.||.|||||..|.|||||.||.||.||||||.|.|..||.|
BL02029___yrr 756 AGCGGACCGGCACAAAATCTCAAGCGTTTTCTACAACCGCATCAGCAAAA 805
BSNT_03973___ 788 AAATGCCGCTCCAAACAGATCCGACCGTCCTGTACGC---GGCAGGCAAG 834
|.|||||..|.|||||.||||||||||||.|.||.|| ||.|| |.
BL02029___yrr 806 ATATGCCATTGCAAACGGATCCGACCGTCTTATATGCACTGGGAG---AA 852
BSNT_03973___ 835 CATAAAGATCGGGTTCTTTATAAGGATCTGGAAATCGATTCACCATACAA 884
||||||.|.||.||..|.||.||.||.||.|||...|||||.|||||.||
BL02029___yrr 853 CATAAAAACCGCGTCATGTACAAAGACCTTGAAGCGGATTCCCCATATAA 902
BSNT_03973___ 885 TACGTATAAAAACACAGGGCTGACGCCAGGGCCGATTGCCAATGCCGGCA 934
||||||.|||.|.||.||.||..||||.|||||||||||.||.||.||..
BL02029___yrr 903 TACGTACAAACATACCGGTCTTCCGCCCGGGCCGATTGCAAACGCTGGAG 952
BSNT_03973___ 935 TGTCGTCATGGGAAGCGGCGCTGCATCCGGATAAAACGGACTATCTGTA- 983
.|.|.||.|||||.|||||..|..|||||||..||||.||||||.|.||
BL02029___yrr 953 AGACTTCCTGGGAGGCGGCATTAAATCCGGAGCAAACAGACTATGTTTAT 1002
BSNT_03973___ 984 TTTCTTGGCCAAA-TCAAATGGTGAGGTCGTATTTACAAAAACGCTAAAA 1032
||||||| |||| ..|||.||.||.|||||.||||||||||||||..||
BL02029___yrr 1003 TTTCTTG--CAAAGAAAAACGGGGAAGTCGTCTTTACAAAAACGCTTGAA 1050
BSNT_03973___ 1033 GAGCATAATAAAGCAAAAGAAAAATACATTTC-----CTCA--------A 1069
||.||.|||||||||||||..|||||.|||.| |.|| |
BL02029___yrr 1051 GAACACAATAAAGCAAAAGCCAAATATATTACGAACACGCAGGACGAGGA 1100
BSNT_03973___ 1070 AAAATGAGAAATAA 1083
||||.||| |.|||
BL02029___yrr 1101 AAAAGGAG-AGTAA 1113
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