Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03964 and BL02023
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:59
# Commandline: needle
# -asequence dna-align/BSNT_03964___yrrR.1.5803.seq
# -bsequence dna-align/BL02023.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03964___yrrR-BL02023.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03964___yrrR-BL02023.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03964___yrrR
# 2: BL02023
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1852
# Identity: 1281/1852 (69.2%)
# Similarity: 1281/1852 (69.2%)
# Gaps: 194/1852 (10.5%)
# Score: 4249.0
#
#
#=======================================
BSNT_03964___ 1 ATGAAGATATCGAAA-CGAATGAAGCTGGCAGTCATCGCTT----TTTTG 45
||||| ||..|.||| ||.|||||| ||| || ||||.|| |||.|
BL02023 1 ATGAA-ATGGCAAAAGCGTATGAAG-TGG--GT-ATCGATTATCATTTCG 45
BSNT_03964___ 46 ATTG-TATTTTTTCTGCTTCTGCTG---AGGCTTGCGGAAATCCAGCTGT 91
..|| |.||||.| |||||||| |||||.||.|||||.||.||||
BL02023 46 GCTGCTCTTTTAT----TTCTGCTGATCAGGCTGGCTGAAATTCAACTGT 91
BSNT_03964___ 92 TTTTCACAGAATCATTTTCTAAAAAGAAAATTAATTTGATTCAAGAAAGT 141
||||.||.||.||.|||||||||..|||..|.||.||.||.||.|||||.
BL02023 92 TTTTTACCGAGTCCTTTTCTAAACGGAATGTGAACTTAATCCAGGAAAGC 141
BSNT_03964___ 142 GTGAAACAGCGGACGGAGGAAGTGCTCATTTCAGATGGAAGAGGCTCTTT 191
||.||||||||.|||||||||||.|..||||||||.||.|||||.|||||
BL02023 142 GTCAAACAGCGCACGGAGGAAGTTCGGATTTCAGACGGGAGAGGATCTTT 191
BSNT_03964___ 192 TTTAGATCGAAACGGGCGGGCG---------CTGACAGGACAAAGCGAGC 232
|||||||||.||| |||| |.|.|| |.|||| |.|
BL02023 192 TTTAGATCGGAAC-----GGCGAACATTTGTCCGTCA-GCCAAA---AAC 232
BSNT_03964___ 233 CCGCGGTTGTTTTGTTCCCTTTTCTGCTGACGCAGGATTGGCCGATCAAA 282
|.||..|.||.||||||||||||.|....|..|||...||||||..||||
BL02023 233 CGGCCATCGTCTTGTTCCCTTTTTTAAAAAATCAGCCGTGGCCGGCCAAA 282
BSNT_03964___ 283 AAAGTTGCGGACATCCTCGGCATGTCTGAAGATAA--TTTG-CGCCAGAC 329
.|||..||.||.||..|...||||.|.||||||.| ||.| .||.||
BL02023 283 GAAGCAGCCGAAATTTTAAACATGACAGAAGATGAGCTTGGAAGCAAG-- 330
BSNT_03964___ 330 ACTAGGTCAGGCAAAAAAACCGGTCATTTTGCAGCAAAAGAAAATCAAAA 379
||.|..||.|||||||||||.||.|||.| || |||||
BL02023 331 -CTGGACCATGCAAAAAAACCCGTGATTCT----CA---------CAAAA 366
BSNT_03964___ 380 CA-------------CTTTCAAA-ACAATCTATCACAAAAATCAATTCTT 415
|| .||||||| || ..||.||..||||||||||....
BL02023 367 CATGACGGAGCGTCCGTTTCAAAGAC-GGCTCTCGAAAAAATCAATAAAC 415
BSNT_03964___ 416 TGAAATATCCCGGCATTTACGGCGTATATATGGAGAATGA---AGACAAG 462
||||||||||.|||.|||||||||||||.|| |||| || |||.|||
BL02023 416 TGAAATATCCGGGCGTTTACGGCGTATACAT--AGAA-GAAACAGAAAAG 462
BSNT_03964___ 463 CCCAGCCTTGCTTCACATACGATAGGGAGCACGAACCAAGATCCGGCGCT 512
..|||.||.|||||.||||||.|.||.|..||.||.|||||.||||..||
BL02023 463 AACAGGCTGGCTTCGCATACGCTCGGTATGACCAATCAAGACCCGGACCT 512
BSNT_03964___ 513 GCT---TCGCAAGAAATATCCTGACAAGGGAAGTCTTCCGATTACAACAG 559
.|| .||| ||||||||.||.|| .||.|.|.|| |.||.|||
BL02023 513 CCTCAGACGC---AAATATCCCGATAA-AGAGGGCCTC----TCCATCAG 554
BSNT_03964___ 560 -----AAATCGGAACAACCGGCTTAGAACGGACATTTGACGAGTTTTTGC 604
|||||||.||...||||.|.||.|||||.|||||.||.||..|||
BL02023 555 CACGAAAATCGGCACCTTCGGCATGGAGCGGACGTTTGATGAATTCCTGC 604
BSNT_03964___ 605 TTCCGGAACAAGACACAAAGCTTTTATATCATGTGGACGGAAAAGGAAAC 654
|.||.||||||||||||||.||.||.|||||||||||||||...||||||
BL02023 605 TGCCTGAACAAGACACAAAACTGTTGTATCATGTGGACGGATTGGGAAAC 654
BSNT_03964___ 655 CCTTTGTTTGGCATGGACGTCAAATATACAGCTGAAGCCAATACATTTTA 704
||||||||.|||||||||||||||||||||||.||.||.|||.|.|||||
BL02023 655 CCTTTGTTCGGCATGGACGTCAAATATACAGCAGACGCAAATCCGTTTTA 704
BSNT_03964___ 705 TCCGCTCCAGGTCAAAACAACGATCGATCAAAGCATTCAAAAAGCGATGG 754
.|||||.||.||||||||||||.|||||.|||...||||..|.||.||||
BL02023 705 CCCGCTGCAAGTCAAAACAACGCTCGATAAAAAGGTTCAGCAGGCAATGG 754
BSNT_03964___ 755 AGGAGGTATTGGATGAACAGGGGCT-GAAAAAGGGAGGAGCTGTGCTGCT 803
|.||.|||.|.|||||.||...||| ||.|||||..|| ||.||.|||||
BL02023 755 AAGATGTACTTGATGACCATCAGCTCGATAAAGGCTGG-GCGGTCCTGCT 803
BSNT_03964___ 804 GGACATCGAAAATAGCAGTGTTCTGGGAATTGTAAGCAAACCAGATGCAG 853
.||||||||.|..|.|.|.||..|||..||||..|||||.||.||...|.
BL02023 804 TGACATCGAGACGAACGGCGTGGTGGCGATTGCGAGCAAGCCCGACTTAA 853
BSNT_03964___ 854 ACGTGTCCCGGCAAAACACACTTCAAAATTATATGCTGACGCCAATCTAT 903
||.||.|...||||||.|||...||.||.|||||||||||.||..|.|||
BL02023 854 ACATGGCTGCGCAAAAAACAAGGCAGAACTATATGCTGACTCCGGTATAT 903
BSNT_03964___ 904 CCCGGATCAGTTTTTAAAACAGTCATTGCCGCAGCTGCAATCGAAAA--- 950
|||||.||.|||||||||||.||.||||||||.||.||.||.|||||
BL02023 904 CCCGGCTCGGTTTTTAAAACCGTGATTGCCGCTGCAGCGATTGAAAACGG 953
BSNT_03964___ 951 -TAATATGGTGAAGCCTAGTC--AAACCTTTAATTGCAATTTTAACCTGT 997
| |||...|.|| ||| ||||||||||.||||||||.|||||||
BL02023 954 CT----TGGATCATCC--GTCTAAAACCTTTAACTGCAATTTGAACCTGT 997
BSNT_03964___ 998 ACGGGGAACCGGGGGACGACAAAGGAA-------CCTTGTCTTTTGATGA 1040
||||.||..|.||.||.|||||||||| || |.||.||
BL02023 998 ACGGTGAGGCCGGAGAGGACAAAGGAAAGCTCAGCC-------TGGAAGA 1040
BSNT_03964___ 1041 AAGTTTTGCCCAAAGCTGTAATTACACATTTACGAGTCTTGCAGAACAAT 1090
.||||||||..|||||||.||.|||||.|||||.|.||||||.|.|||..
BL02023 1041 CAGTTTTGCGGAAAGCTGCAACTACACGTTTACAAATCTTGCCGGACAGC 1090
BSNT_03964___ 1091 TAAT-GAAAAAAGACAGCTCAGTTATTGAAGATA-TGTCCGAGAAGCTGG 1138
|..| ||||||| |||||||.||.||.||||||| || |.|..|||||.|
BL02023 1091 TCGTAGAAAAAA-ACAGCTCCGTGATCGAAGATACTG-CTGCAAAGCTTG 1138
BSNT_03964___ 1139 CTCTCACTGATCGGGCAGGCTGGGAGGGAAAACTGTACCACGAAACCGAT 1188
..||.||.|..||||..||||||||.|||||.|||||.||.|||...||.
BL02023 1139 GGCTGACCGGACGGGTCGGCTGGGAAGGAAAGCTGTATCATGAAGATGAG 1188
BSNT_03964___ 1189 TTCCGCCAGCTGTATAACGAAAAAAGCGGCGTG----ATTTGGGGGGATG 1234
|||.|.|||.|.|||.|.|||| |.||..| ||.||||||||||
BL02023 1189 TTCAGACAGTTTTATCATGAAA----CTGCAGGATCAATCTGGGGGGATG 1234
BSNT_03964___ 1235 AAAAAGACAAATCAGTCAAAAAAGCCATTGCGCAAACAGCAATCGGGCAG 1284
||||.||||||..|||.||||||||..|.||.||.||.||.|||||.||.
BL02023 1235 AAAAGGACAAAAAAGTTAAAAAAGCTGTAGCCCAGACCGCTATCGGCCAA 1284
BSNT_03964___ 1285 AAAAATGTAAAGGTAACGCCGCTAGAGGTAGCCAATATGATGGCGACAAT 1334
||.|||||.|||.|.||.|||.|.||..|.|.|||.|||||||||||.||
BL02023 1285 AAGAATGTGAAGCTGACTCCGTTGGAAATCGTCAACATGATGGCGACCAT 1334
BSNT_03964___ 1335 CGCCCGCGGCGGAGAAAAACGGCAGGTGAAAATTGCCGAACAAATTGAGT 1384
|||..|.||||||||.|||...||.||.||.||.||.||.||.||.||.|
BL02023 1335 CGCAAGAGGCGGAGAGAAAAAACAAGTCAAGATCGCAGACCAGATCGAAT 1384
BSNT_03964___ 1385 ATAAGAACGGCACA------AC-GCTCGTTACATTTAAGGATCAGAAGCT 1427
||||.||||||||| || ||| |||||.|||||..||||
BL02023 1385 ATAAAAACGGCACATTGATGACGGCT-------TTTAAAGATCACGAGCT 1427
BSNT_03964___ 1428 CAAAGGGGAAACGATAGACAAATATACGTCACAGCAGCTTCAAAAAATAC 1477
|..|||.||.|..||.|||.|.|||||..|.||..||||.||||| ||
BL02023 1428 CCCAGGAGAGAAAATCGACCAGTATACAGCGCAAAAGCTGCAAAA---AC 1474
BSNT_03964___ 1478 TGCGGCGGGTGGT-AGAA----TCTC-CTTCTGGAACGGGCAGAAG---- 1517
||| | |||| |.|| |.||||.||.||| ||.|
BL02023 1475 TGC---------TCAGAAAAGTTGTCACATCTGAAAAGGG--GACGGGCC 1513
BSNT_03964___ 1518 ---GTTTCA-AGATCTTCCGTATACTGTAGCAGGGAAATCGGGCACAGCC 1563
|.|||| .|||||||||||...||||||.||.||||||||||||||.
BL02023 1514 GGCGCTTCAGCGATCTTCCGTACGATGTAGCGGGAAAATCGGGCACAGCG 1563
BSNT_03964___ 1564 CAAACAGGCA-------AGCTTTCAAAAGAGAAGGAAACGCTCTATGAAA 1606
||.||||||| ||.|..||||| |||||||||||.|.|
BL02023 1564 CAGACAGGCAGGACGACAGATGACAAAA-------AAACGCTCTATCATA 1606
BSNT_03964___ 1607 AATGGTTTGCCGGATATTTTCCCGCGGATAAGCCGAAATACGCTCTGGTT 1656
|||||||||||||.||||||||.|||||.|||||||||||.||.||.||.
BL02023 1607 AATGGTTTGCCGGTTATTTTCCGGCGGACAAGCCGAAATATGCGCTCGTC 1656
BSNT_03964___ 1657 GTTTTACACATGGATACACCGGGAGAT---AAGGCTCTGACAAATTCGGT 1703
||..|.||.||||||||.||| ||| ||||||..|||||||.|.||
BL02023 1657 GTCGTCCATATGGATACGCCG---GATAGCAAGGCTGCGACAAATGCCGT 1703
BSNT_03964___ 1704 GTTTTATGATATTGTTAAAAAAGTACACGAAATTGAAATCAATCAGAAAT 1753
.||||||||||||||||||||||||.|.||||||||||..||.||||.||
BL02023 1704 ATTTTATGATATTGTTAAAAAAGTATATGAAATTGAAAAGAACCAGACAT 1753
BSNT_03964___ 1754 AG 1755
||
BL02023 1754 AG 1755
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