Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01366 and BL02001
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:53
# Commandline: needle
# -asequence dna-align/BSNT_01366___yfiB.1.5803.seq
# -bsequence dna-align/BL02001___yfiB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01366___yfiB-BL02001___yfiB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01366___yfiB-BL02001___yfiB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01366___yfiB
# 2: BL02001___yfiB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2037
# Identity: 1059/2037 (52.0%)
# Similarity: 1059/2037 (52.0%)
# Gaps: 624/2037 (30.6%)
# Score: 2229.0
#
#
#=======================================
BSNT_01366___ 1 ATG----------CAAAAGGCTTTGTCGTTTTTAAAACCATATTCATTGC 40
||| .|||| |.||||||.||.|||
BL02001___yfi 1 ATGATCTCACTCTTAAAA----------TATTTAAAGCCCTAT------- 33
BSNT_01366___ 41 TGGCGGGAATTG--------CGCTGATTCTTATGTTGACGGAGCTTGCAG 82
..||.|.||.|| ||||| ||.|||..||| |.|| ||||
BL02001___yfi 34 AAGCTGCAAGTGATTCTCGTCGCTG-TTTTTACTTTG-CTGA----GCAG 77
BSNT_01366___ 83 T-TGAACTGATGCAGCCTTTATTAATTGCAAAAATCATCGAC---GATGG 128
| || || || || |||||| |||| |||| |||||
BL02001___yfi 78 TGTG--CT--TG-AG-CTTTAT---TTGC---------CGACGTTGATGG 109
BSNT_01366___ 129 --GAT---ATTGAAGCAAGATCTG-CGGCAT-GTA-----TGGATATGGG 166
||| .|||| || |||.|| ||| | ||||||
BL02001___yfi 110 CTGATGTCGTTGA---------TGTCGGAATCGTAAACAGT-GATATG-- 147
BSNT_01366___ 167 GCGCGGTCATGATCGGGCTGACCGTGTTATCCTTTG-----CGGCGG--G 209
||.| |||| |||| |||||| |
BL02001___yfi 148 ---------------------CCAT-TTAT--TTTGAAAACCGGCGGCTG 173
BSNT_01366___ 210 GATG-----CTGAATTCCTTTTATGCCGCCCA----------TGTCAGCC 244
|||| ||| .|||.|| |.|.||| |||| |..
BL02001___yfi 174 GATGATCGCCTG--CTCCCTT----CTGGCCATCATGATGACTGTC-GGA 216
BSNT_01366___ 245 AAAGC--TTTTCCTATGATACGAGAAAAG-----GGCTT---------TT 278
||||| ||||| |.|.|||.||.|| ||||| |.
BL02001___yfi 217 AAAGCGTTTTTC----GCTTCGAAAACAGCCCTCGGCTTTGGAAGAGATA 262
BSNT_01366___ 279 TCA-----AAAAATCCAGTCCTTCTC-----------CTATTCCA----- 307
||| ||| |.|| ||.|| |.||||.|
BL02001___yfi 263 TCAGGCGCAAA----CTGT--TTGTCAAAGTTGAACACCATTCAATGGAT 306
BSNT_01366___ 308 -CATTTGGA-----CAGTTTTCGTCCT-CTTCTTATATTACAAGGCTG-- 348
.|||.||| ||||| || |||||...||||| |.|
BL02001___yfi 307 GAATTCGGAAAAATCAGTT------CTGCTTCTCTCATTAC----CCGTA 346
BSNT_01366___ 349 --ACAAACGACGTCACACAGGTTCAA---------AATATGAT--TTTTA 385
||.||.||.||||..|||||.||| ||.||||| |||.|
BL02001___yfi 347 CCACCAATGATGTCAAGCAGGTCCAAGATGTGCTCAACATGATGCTTTCA 396
BSNT_01366___ 386 TGAGTTTGCGGTTTATGCTGCGGGCTCCCTTAATGATTGCAGGCGGCATT 435
||.|||..|.|.||.||.||||||.|.|..|||||.|||
BL02001___yfi 397 -----------TTGATGACGAGAGCGCCGTTAATGCTGGTCGGCGGTATT 435
BSNT_01366___ 436 GTGCTGTCGCTTGCCGTTAATGTGAAACTCGGCTTTTTTCTGCTTGTGAC 485
|||||..||.||.||....|||..||.|| |.|..||.|.| ||.||.|
BL02001___yfi 436 GTGCTTGCGGTTTCCAGAGATGCCAAGCT-GTCGATTATAT--TTCTGGC 482
BSNT_01366___ 486 CATTCCGATCCTGAT-CTTG---------TTTTTGCTATGGGTATTA-AG 524
|..|| |||.||| |||| ||||| || .|||| |.
BL02001___yfi 483 CGCTC---TCCCGATACTTGCAGGGCTGATTTTT-CT-----CATTACAA 523
BSNT_01366___ 525 GAAAGGCGGGGCAC-TGTTCCGC-TCAGTGCAGAAAAGGCTGGATCAAGT 572
||||.||.|..|.| |.|||.|| || .||||.||||.|..|||||...|
BL02001___yfi 524 GAAAAGCTGTCCCCTTATTCGGCGTC-CTGCAAAAAAAGACGGATCGTCT 572
BSNT_01366___ 573 GAACACCATCATG----CA-GGAAAATTTAA-------TCG---CAATCA 607
.||| |.|| || ||||..|||.| ||| ||.||.
BL02001___yfi 573 CAAC-----CTTGTTCTCAGGGAAGGTTTGACGGGCGTTCGTGTCATTCG 617
BSNT_01366___ 608 AGCTGATCAA-AGCGCTGCTTCGCGGCAGCCACGAAGTCAAA---CGATT 653
.|| |.|.|| .|||.||.| ||.||| ||| ||.||
BL02001___yfi 618 CGC-GTTTAACCGCGTTGAT----------CAAGAA---AAAGTCCGGTT 653
BSNT_01366___ 654 TATCAAAGCCAACACAAGGCTGATGGAAAAAACGGTTTCG---------- 693
|...|||||.||| |||.|| |||||
BL02001___yfi 654 TCAAAAAGCGAAC------------GAAGAA----TTTCGCGATACAGGC 687
BSNT_01366___ 694 ---GCCTT--------TCA--GCTTGTGGAATTCACGATGCCTGTACTGA 730
|||.| ||| |||| |...|||| |||||..|||
BL02001___yfi 688 ATCGCCGTCAACAGAATCATGGCTT-TTCTATTC------CCTGTCATGA 730
BSNT_01366___ 731 TGCTTTTGATGAATCTCTGTATCCTTTTGATTTTGTGG-GCGGGGTCCTA 779
||.||.||||||||.||...|.|.|...||||.|.||| .|||.|.|.|
BL02001___yfi 731 TGATTATGATGAATTTCACGAACATCGCGATTATCTGGTTCGGAGGCAT- 779
BSNT_01366___ 780 CAGTATTACGAGC--GGAAGCACTCAGGTTGGCGATGTT-GTTGCGATAA 826
|.|.|| |||.| ||.||||..|||||.|| ||..|| .|.||..|..
BL02001___yfi 780 CCGCAT--CGATCAAGGCAGCATGCAGGTCGG-GAACTTAATGGCTTTCC 826
BSNT_01366___ 827 TTAACTACGCA------ACACGAATTACAGGCGC-------GCTTTCGAT 863
||.|.||.||| |..|.|||| |||| ||||.||||
BL02001___yfi 827 TTCAATATGCATCGATGATTCTAATT----GCGCTGATCATGCTTGCGAT 872
BSNT_01366___ 864 GTTTCCGTTTTTGATTATGATTTTCACCAGGGCGAAGGCTTCAGGGGATA 913
| .|.||..||||.| ||.|.|||||..||||.||.|..|...
BL02001___yfi 873 G---ACATTCGTGATGA------TCCCAAGGGCTCAGGCATCTGCCGGCC 913
BSNT_01366___ 914 GAATCGGTGAGGTGCTTGAAACAGA--------------AGGCG-ACGAG 948
|.||...|||.|||||...|||||| |..|| |.|||
BL02001___yfi 914 GCATTAATGAAGTGCTGTTAACAGAGCCTTCGATTACCGATCCGAAAGAG 963
BSNT_01366___ 949 CGGGAGGAAGGCATCATATTTGATCGTTTGTCAGGACAGATTGAGTTTCA 998
|.|.||.|||.||.| .|.|||...||..|..||||||||||
BL02001___yfi 964 CCGCAGAAAGACAGC---------GGCTTGCGCGGTTATGTTGAGTTTCA 1004
BSNT_01366___ 999 GCATGTATCCTTTCGCTATCCTGAAATGGACAGAGAAG--CGCTCAGGA- 1045
|.||||..|.|||||.|||.|.| ||.|.||.||| ||.||..||
BL02001___yfi 1005 GAATGTGACTTTTCGTTATGCCG----GGGCCGAAAAGCCCGTTCTCGAA 1050
BSNT_01366___ 1046 -ATGTCTCATTTTCCGCAAAGCCAAGAGAAACGATCGCGATTCTCGG-TG 1093
||.||||.||....||||||||..|.||.||||..|||||..|||| .|
BL02001___yfi 1051 GATATCTCGTTCAAGGCAAAGCCGGGTGAGACGACTGCGATCATCGGCAG 1100
BSNT_01366___ 1094 CGACGGGCTCGGGCAAGTCCACGCTTTTTCAGCTCATCCCGCGGCTTTAT 1143
| ||.||..||||.||..|.|||.||.||||..|.|||||| .|.|||.|
BL02001___yfi 1101 C-ACAGGAGCGGGAAAAACGACGATTCTTCAATTGATCCCG-AGATTTTT 1148
BSNT_01366___ 1144 CAGCCGGATTCAGGCCGCATTTACATAGATGAAAAGCCGGT-----TCA- 1187
| ||| |||.|.|.|| ||| |.|| |||
BL02001___yfi 1149 C-----GAT---------ATTGAAAAAG--GAA----CTGTGCTAGTCAA 1178
BSNT_01366___ 1188 ------AGATATTCCG---------GCTGAAGG-GCTGCGCAGGCAAATT 1221
|||| .||.| ||..|||| |||.|||..|.||||.
BL02001___yfi 1179 CGGAACAGAT-GTCAGAAAGATGGCGCAAAAGGAGCTTCGCGCGAAAATC 1227
BSNT_01366___ 1222 GGATATGTACCGCAGGAAGTCCTCTT--GTTTTC--CGGCACAATCAAAG 1267
||.|||||.|||||..||| ||| .|.||| |||.||.||.||||
BL02001___yfi 1228 GGCTATGTCCCGCAAAAAG----CTTCAATATTCAGCGGGACGATTAAAG 1273
BSNT_01366___ 1268 AAAACAT-CGCTTGGGGCAAAGAAAATGCTTCACTAGATGAAATAATGGA 1316
|.||.|| ||||| .|||||||||.||||..||...||.|||||..||||
BL02001___yfi 1274 ACAATATCCGCTT-TGGCAAAGAAGATGCAACAGATGAAGAAATTCTGGA 1322
BSNT_01366___ 1317 TG---------CGGCCAAACA---TGCGCAAATT---------CATG--A 1343
.| |||| ||| ||| |.|.|| ||.| |
BL02001___yfi 1323 AGCACTTGAAACGGC---ACAGGCTGC-CGAGTTTGTAGAAGGCAAGGAA 1368
BSNT_01366___ 1344 AACGATTTTGAAGCTCCCAAATGGATATGACACAGTTTTGGGGCAAAGAG 1393
||||...||||| ||..||||.|| || ||
BL02001___yfi 1369 AACGGAATTGAA--TCTGAAATCGA-----------------GC----AG 1395
BSNT_01366___ 1394 GC----GTCAACCTGTCCGGCGGCCAAAAACAGCGAATTTCCATTGCGCG 1439
|| |.|||.||.||.||||||||.||||||||..|||||||.||..|
BL02001___yfi 1396 GCCGGAGCCAATCTTTCAGGCGGCCAGAAACAGCGGCTTTCCATCGCCAG 1445
BSNT_01366___ 1440 GGCACTGATTC-GAAAACCGGCTATCCTTCTATTAGATGACAGCACAAGC 1488
|||| |.|.|| |||||||||..||...|.||||.||.||||||......
BL02001___yfi 1446 GGCA-TTAGTCAGAAAACCGGAAATTTATTTATTTGACGACAGCTTTTCG 1494
BSNT_01366___ 1489 GCGCTTGATCTGC-AAACGGAGGCGAAGCT---------GCTTGAAGCAA 1528
||||||||| |.| |||||||....||||| || |||||.||
BL02001___yfi 1495 GCGCTTGAT-TACAAAACGGATCAAAAGCTGAGAAAAGCGC-TGAAGAAA 1542
BSNT_01366___ 1529 TCA---GCACATACCATTGCACAACTT--TGATCATTACACAAAAAATAA 1573
.|| ||..||.|| || |.| |.|||.||.|.||||...|||
BL02001___yfi 1543 ACAACCGCTGATGCC---GC----CGTCATCATCGTTGCCCAAAGGGTAA 1585
BSNT_01366___ 1574 CCACGGCGATGAAAGCTGATCAGA------TTTTGCTGCTTGAGGACGGC 1617
.||||...|.|.|.||.|||||.| ||||
BL02001___yfi 1586 GCACGATTACGGATGCGGATCAAATCATCGTTTT---------------- 1619
BSNT_01366___ 1618 GAACTGATTGAAAAA-----------GGCACTCAT----AGTGAGCTGCT 1652
||.|||..|||||| ||||||||| |.| ||||
BL02001___yfi 1620 -AAATGAAGGAAAAATAGCCGGCATCGGCACTCATCAACAAT----TGCT 1664
BSNT_01366___ 1653 TTCTGCATCTCAGTTATACAAGCGCATTTACGAG------------TCAC 1690
|.||| |.||..||||||||.|| ||||
BL02001___yfi 1665 TGCTG------------AAAACGGCATTTACCAGGAAATCGTCGCATCAC 1702
BSNT_01366___ 1691 AATTCGGAAG-----GGAGGGGAGCGAGTCATGCTAA 1722
| |.|| |||||..|||| ||||.
BL02001___yfi 1703 A-----GCAGGCTGAGGAGGAAAGCG---CATGA--- 1728
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