Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01366 and BL02001

See Amino acid alignment / Visit BSNT_01366 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:53
# Commandline: needle
#    -asequence dna-align/BSNT_01366___yfiB.1.5803.seq
#    -bsequence dna-align/BL02001___yfiB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01366___yfiB-BL02001___yfiB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01366___yfiB-BL02001___yfiB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01366___yfiB
# 2: BL02001___yfiB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2037
# Identity:    1059/2037 (52.0%)
# Similarity:  1059/2037 (52.0%)
# Gaps:         624/2037 (30.6%)
# Score: 2229.0
# 
#
#=======================================

BSNT_01366___      1 ATG----------CAAAAGGCTTTGTCGTTTTTAAAACCATATTCATTGC     40
                     |||          .||||          |.||||||.||.|||       
BL02001___yfi      1 ATGATCTCACTCTTAAAA----------TATTTAAAGCCCTAT-------     33

BSNT_01366___     41 TGGCGGGAATTG--------CGCTGATTCTTATGTTGACGGAGCTTGCAG     82
                     ..||.|.||.||        ||||| ||.|||..||| |.||    ||||
BL02001___yfi     34 AAGCTGCAAGTGATTCTCGTCGCTG-TTTTTACTTTG-CTGA----GCAG     77

BSNT_01366___     83 T-TGAACTGATGCAGCCTTTATTAATTGCAAAAATCATCGAC---GATGG    128
                     | ||  ||  || || ||||||   ||||         ||||   |||||
BL02001___yfi     78 TGTG--CT--TG-AG-CTTTAT---TTGC---------CGACGTTGATGG    109

BSNT_01366___    129 --GAT---ATTGAAGCAAGATCTG-CGGCAT-GTA-----TGGATATGGG    166
                       |||   .||||         || |||.|| |||     | ||||||  
BL02001___yfi    110 CTGATGTCGTTGA---------TGTCGGAATCGTAAACAGT-GATATG--    147

BSNT_01366___    167 GCGCGGTCATGATCGGGCTGACCGTGTTATCCTTTG-----CGGCGG--G    209
                                          ||.| ||||  ||||     ||||||  |
BL02001___yfi    148 ---------------------CCAT-TTAT--TTTGAAAACCGGCGGCTG    173

BSNT_01366___    210 GATG-----CTGAATTCCTTTTATGCCGCCCA----------TGTCAGCC    244
                     ||||     |||  .|||.||    |.|.|||          |||| |..
BL02001___yfi    174 GATGATCGCCTG--CTCCCTT----CTGGCCATCATGATGACTGTC-GGA    216

BSNT_01366___    245 AAAGC--TTTTCCTATGATACGAGAAAAG-----GGCTT---------TT    278
                     |||||  |||||    |.|.|||.||.||     |||||         |.
BL02001___yfi    217 AAAGCGTTTTTC----GCTTCGAAAACAGCCCTCGGCTTTGGAAGAGATA    262

BSNT_01366___    279 TCA-----AAAAATCCAGTCCTTCTC-----------CTATTCCA-----    307
                     |||     |||    |.||  ||.||           |.||||.|     
BL02001___yfi    263 TCAGGCGCAAA----CTGT--TTGTCAAAGTTGAACACCATTCAATGGAT    306

BSNT_01366___    308 -CATTTGGA-----CAGTTTTCGTCCT-CTTCTTATATTACAAGGCTG--    348
                      .|||.|||     |||||      || |||||...|||||    |.|  
BL02001___yfi    307 GAATTCGGAAAAATCAGTT------CTGCTTCTCTCATTAC----CCGTA    346

BSNT_01366___    349 --ACAAACGACGTCACACAGGTTCAA---------AATATGAT--TTTTA    385
                       ||.||.||.||||..|||||.|||         ||.|||||  |||.|
BL02001___yfi    347 CCACCAATGATGTCAAGCAGGTCCAAGATGTGCTCAACATGATGCTTTCA    396

BSNT_01366___    386 TGAGTTTGCGGTTTATGCTGCGGGCTCCCTTAATGATTGCAGGCGGCATT    435
                                ||.|||..|.|.||.||.||||||.|.|..|||||.|||
BL02001___yfi    397 -----------TTGATGACGAGAGCGCCGTTAATGCTGGTCGGCGGTATT    435

BSNT_01366___    436 GTGCTGTCGCTTGCCGTTAATGTGAAACTCGGCTTTTTTCTGCTTGTGAC    485
                     |||||..||.||.||....|||..||.|| |.|..||.|.|  ||.||.|
BL02001___yfi    436 GTGCTTGCGGTTTCCAGAGATGCCAAGCT-GTCGATTATAT--TTCTGGC    482

BSNT_01366___    486 CATTCCGATCCTGAT-CTTG---------TTTTTGCTATGGGTATTA-AG    524
                     |..||   |||.||| ||||         ||||| ||     .|||| |.
BL02001___yfi    483 CGCTC---TCCCGATACTTGCAGGGCTGATTTTT-CT-----CATTACAA    523

BSNT_01366___    525 GAAAGGCGGGGCAC-TGTTCCGC-TCAGTGCAGAAAAGGCTGGATCAAGT    572
                     ||||.||.|..|.| |.|||.|| || .||||.||||.|..|||||...|
BL02001___yfi    524 GAAAAGCTGTCCCCTTATTCGGCGTC-CTGCAAAAAAAGACGGATCGTCT    572

BSNT_01366___    573 GAACACCATCATG----CA-GGAAAATTTAA-------TCG---CAATCA    607
                     .|||     |.||    || ||||..|||.|       |||   ||.||.
BL02001___yfi    573 CAAC-----CTTGTTCTCAGGGAAGGTTTGACGGGCGTTCGTGTCATTCG    617

BSNT_01366___    608 AGCTGATCAA-AGCGCTGCTTCGCGGCAGCCACGAAGTCAAA---CGATT    653
                     .|| |.|.|| .|||.||.|          ||.|||   |||   ||.||
BL02001___yfi    618 CGC-GTTTAACCGCGTTGAT----------CAAGAA---AAAGTCCGGTT    653

BSNT_01366___    654 TATCAAAGCCAACACAAGGCTGATGGAAAAAACGGTTTCG----------    693
                     |...|||||.|||            |||.||    |||||          
BL02001___yfi    654 TCAAAAAGCGAAC------------GAAGAA----TTTCGCGATACAGGC    687

BSNT_01366___    694 ---GCCTT--------TCA--GCTTGTGGAATTCACGATGCCTGTACTGA    730
                        |||.|        |||  |||| |...||||      |||||..|||
BL02001___yfi    688 ATCGCCGTCAACAGAATCATGGCTT-TTCTATTC------CCTGTCATGA    730

BSNT_01366___    731 TGCTTTTGATGAATCTCTGTATCCTTTTGATTTTGTGG-GCGGGGTCCTA    779
                     ||.||.||||||||.||...|.|.|...||||.|.||| .|||.|.|.| 
BL02001___yfi    731 TGATTATGATGAATTTCACGAACATCGCGATTATCTGGTTCGGAGGCAT-    779

BSNT_01366___    780 CAGTATTACGAGC--GGAAGCACTCAGGTTGGCGATGTT-GTTGCGATAA    826
                     |.|.||  |||.|  ||.||||..|||||.|| ||..|| .|.||..|..
BL02001___yfi    780 CCGCAT--CGATCAAGGCAGCATGCAGGTCGG-GAACTTAATGGCTTTCC    826

BSNT_01366___    827 TTAACTACGCA------ACACGAATTACAGGCGC-------GCTTTCGAT    863
                     ||.|.||.|||      |..|.||||    ||||       ||||.||||
BL02001___yfi    827 TTCAATATGCATCGATGATTCTAATT----GCGCTGATCATGCTTGCGAT    872

BSNT_01366___    864 GTTTCCGTTTTTGATTATGATTTTCACCAGGGCGAAGGCTTCAGGGGATA    913
                     |   .|.||..||||.|      ||.|.|||||..||||.||.|..|...
BL02001___yfi    873 G---ACATTCGTGATGA------TCCCAAGGGCTCAGGCATCTGCCGGCC    913

BSNT_01366___    914 GAATCGGTGAGGTGCTTGAAACAGA--------------AGGCG-ACGAG    948
                     |.||...|||.|||||...||||||              |..|| |.|||
BL02001___yfi    914 GCATTAATGAAGTGCTGTTAACAGAGCCTTCGATTACCGATCCGAAAGAG    963

BSNT_01366___    949 CGGGAGGAAGGCATCATATTTGATCGTTTGTCAGGACAGATTGAGTTTCA    998
                     |.|.||.|||.||.|         .|.|||...||..|..||||||||||
BL02001___yfi    964 CCGCAGAAAGACAGC---------GGCTTGCGCGGTTATGTTGAGTTTCA   1004

BSNT_01366___    999 GCATGTATCCTTTCGCTATCCTGAAATGGACAGAGAAG--CGCTCAGGA-   1045
                     |.||||..|.|||||.|||.|.|    ||.|.||.|||  ||.||..|| 
BL02001___yfi   1005 GAATGTGACTTTTCGTTATGCCG----GGGCCGAAAAGCCCGTTCTCGAA   1050

BSNT_01366___   1046 -ATGTCTCATTTTCCGCAAAGCCAAGAGAAACGATCGCGATTCTCGG-TG   1093
                      ||.||||.||....||||||||..|.||.||||..|||||..|||| .|
BL02001___yfi   1051 GATATCTCGTTCAAGGCAAAGCCGGGTGAGACGACTGCGATCATCGGCAG   1100

BSNT_01366___   1094 CGACGGGCTCGGGCAAGTCCACGCTTTTTCAGCTCATCCCGCGGCTTTAT   1143
                     | ||.||..||||.||..|.|||.||.||||..|.|||||| .|.|||.|
BL02001___yfi   1101 C-ACAGGAGCGGGAAAAACGACGATTCTTCAATTGATCCCG-AGATTTTT   1148

BSNT_01366___   1144 CAGCCGGATTCAGGCCGCATTTACATAGATGAAAAGCCGGT-----TCA-   1187
                     |     |||         |||.|.|.||  |||    |.||     ||| 
BL02001___yfi   1149 C-----GAT---------ATTGAAAAAG--GAA----CTGTGCTAGTCAA   1178

BSNT_01366___   1188 ------AGATATTCCG---------GCTGAAGG-GCTGCGCAGGCAAATT   1221
                           |||| .||.|         ||..|||| |||.|||..|.||||.
BL02001___yfi   1179 CGGAACAGAT-GTCAGAAAGATGGCGCAAAAGGAGCTTCGCGCGAAAATC   1227

BSNT_01366___   1222 GGATATGTACCGCAGGAAGTCCTCTT--GTTTTC--CGGCACAATCAAAG   1267
                     ||.|||||.|||||..|||    |||  .|.|||  |||.||.||.||||
BL02001___yfi   1228 GGCTATGTCCCGCAAAAAG----CTTCAATATTCAGCGGGACGATTAAAG   1273

BSNT_01366___   1268 AAAACAT-CGCTTGGGGCAAAGAAAATGCTTCACTAGATGAAATAATGGA   1316
                     |.||.|| ||||| .|||||||||.||||..||...||.|||||..||||
BL02001___yfi   1274 ACAATATCCGCTT-TGGCAAAGAAGATGCAACAGATGAAGAAATTCTGGA   1322

BSNT_01366___   1317 TG---------CGGCCAAACA---TGCGCAAATT---------CATG--A   1343
                     .|         ||||   |||   ||| |.|.||         ||.|  |
BL02001___yfi   1323 AGCACTTGAAACGGC---ACAGGCTGC-CGAGTTTGTAGAAGGCAAGGAA   1368

BSNT_01366___   1344 AACGATTTTGAAGCTCCCAAATGGATATGACACAGTTTTGGGGCAAAGAG   1393
                     ||||...|||||  ||..||||.||                 ||    ||
BL02001___yfi   1369 AACGGAATTGAA--TCTGAAATCGA-----------------GC----AG   1395

BSNT_01366___   1394 GC----GTCAACCTGTCCGGCGGCCAAAAACAGCGAATTTCCATTGCGCG   1439
                     ||    |.|||.||.||.||||||||.||||||||..|||||||.||..|
BL02001___yfi   1396 GCCGGAGCCAATCTTTCAGGCGGCCAGAAACAGCGGCTTTCCATCGCCAG   1445

BSNT_01366___   1440 GGCACTGATTC-GAAAACCGGCTATCCTTCTATTAGATGACAGCACAAGC   1488
                     |||| |.|.|| |||||||||..||...|.||||.||.||||||......
BL02001___yfi   1446 GGCA-TTAGTCAGAAAACCGGAAATTTATTTATTTGACGACAGCTTTTCG   1494

BSNT_01366___   1489 GCGCTTGATCTGC-AAACGGAGGCGAAGCT---------GCTTGAAGCAA   1528
                     ||||||||| |.| |||||||....|||||         || |||||.||
BL02001___yfi   1495 GCGCTTGAT-TACAAAACGGATCAAAAGCTGAGAAAAGCGC-TGAAGAAA   1542

BSNT_01366___   1529 TCA---GCACATACCATTGCACAACTT--TGATCATTACACAAAAAATAA   1573
                     .||   ||..||.||   ||    |.|  |.|||.||.|.||||...|||
BL02001___yfi   1543 ACAACCGCTGATGCC---GC----CGTCATCATCGTTGCCCAAAGGGTAA   1585

BSNT_01366___   1574 CCACGGCGATGAAAGCTGATCAGA------TTTTGCTGCTTGAGGACGGC   1617
                     .||||...|.|.|.||.|||||.|      ||||                
BL02001___yfi   1586 GCACGATTACGGATGCGGATCAAATCATCGTTTT----------------   1619

BSNT_01366___   1618 GAACTGATTGAAAAA-----------GGCACTCAT----AGTGAGCTGCT   1652
                      ||.|||..||||||           |||||||||    |.|    ||||
BL02001___yfi   1620 -AAATGAAGGAAAAATAGCCGGCATCGGCACTCATCAACAAT----TGCT   1664

BSNT_01366___   1653 TTCTGCATCTCAGTTATACAAGCGCATTTACGAG------------TCAC   1690
                     |.|||            |.||..||||||||.||            ||||
BL02001___yfi   1665 TGCTG------------AAAACGGCATTTACCAGGAAATCGTCGCATCAC   1702

BSNT_01366___   1691 AATTCGGAAG-----GGAGGGGAGCGAGTCATGCTAA   1722
                     |     |.||     |||||..||||   ||||.   
BL02001___yfi   1703 A-----GCAGGCTGAGGAGGAAAGCG---CATGA---   1728


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