Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03016 and BL01990

See Amino acid alignment / Visit BSNT_03016 in genome browser / Return to Orthologue table 
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:43
# Commandline: needle
#    -asequence dna-align/BSNT_03016___yngG.1.5803.seq
#    -bsequence dna-align/BL01990___yngG.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03016___yngG-BL01990___yngG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03016___yngG-BL01990___yngG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03016___yngG
# 2: BL01990___yngG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 939
# Identity:     642/939 (68.4%)
# Similarity:   642/939 (68.4%)
# Gaps:          66/939 ( 7.0%)
# Score: 1987.0
# 
#
#=======================================

BSNT_03016___      1 AT-GTCATATCCTAAAAAAGTGAAAATCAAAGAAGTCGGCCCGCGTGACG     49
                     || |.|.|| ||.||.||..|....||.|||||||||||.|||||.||||
BL01990___yng      1 ATGGACGTA-CCGAAGAACATTTTCATTAAAGAAGTCGGGCCGCGCGACG     49

BSNT_03016___     50 GCTTACAAAACGAGC---CCGTA--TGGATCGCAACAGAGGATAAAATAA     94
                     |..|.|||||.||.|   |||.|  |   |||  ||||..||||||||.|
BL01990___yng     50 GTCTGCAAAATGAACAAACCGCACTT---TCG--ACAGCTGATAAAATTA     94

BSNT_03016___     95 CCTGGATCAACCAGCTTTC--CCGGACAGGGCTTTCGTATATTGAAATCA    142
                     ||||||||.||..||||||  ||  |||||||||||||||||.|||||||
BL01990___yng     95 CCTGGATCGACATGCTTTCTGCC--ACAGGGCTTTCGTATATCGAAATCA    142

BSNT_03016___    143 CATCCTTCGTTCACCCGAAATGGATTCCGGCGCT-TCGAGATGCTATCGA    191
                     |.||.|||||.||.||.||.||||||||.||.|| || .|||||..|.||
BL01990___yng    143 CTTCATTCGTCCATCCTAAGTGGATTCCTGCACTGTC-TGATGCCCTTGA    191

BSNT_03016___    192 CGTAGCAAAAGGCATCGACCGTTTAAAA----GGGGTAACGTACGCGGCA    237
                     .||.||.|||||.|||.||||    .||    ||.||.||.|||||.||.
BL01990___yng    192 TGTCGCCAAAGGGATCAACCG----GAAGCCGGGCGTCACCTACGCAGCC    237

BSNT_03016___    238 CTTGTCCCGAATCAAAGAGGATTGGAGAATGCGCTTGAAGGAGGCATTAA    287
                     ||..|.|||||.|.||.|||..||||....||.||.||||||||.||..|
BL01990___yng    238 CTGATTCCGAACCGAAAAGGGCTGGAACGGGCTCTCGAAGGAGGGATCGA    287

BSNT_03016___    288 CGAGGCTTGCGTTTTTATGTCCGCCAGCGAGACGCACAACAGAAAAAACA    337
                     .||.||||..|||||.|||||.||.||||||||.||||||.|.|||||.|
BL01990___yng    288 TGAAGCTTCTGTTTTCATGTCGGCAAGCGAGACACACAACCGGAAAAATA    337

BSNT_03016___    338 TCAATAAATCCACTTC--TGAATCCCTTCATATACTCAAACAAGTAAAC-    384
                     |.||.|||||.|  ||  .|||.|.||||...|.||.||..||||.|.| 
BL01990___yng    338 TTAACAAATCGA--TCGGGGAAACGCTTCCCGTCCTGAAGGAAGTCATCG    385

BSNT_03016___    385 -AACGACGCACAAAAAGCAAACCTCACAACAAGAGCCTACCTCTCGACTG    433
                      |.||  |||.||.||||...||||||..|.|||||.|||||.||.||.|
BL01990___yng    386 GAGCG--GCAAAACAAGCGGGCCTCACCGCCAGAGCATACCTGTCCACAG    433

BSNT_03016___    434 TTTTCGGCTGTCCGTACGAAAAAGATGTCCCCATT-GAACAAGTCATTCG    482
                     |.||.||||||||.||.|||.|..|.|| .||||| ||||||.|.||.||
BL01990___yng    434 TATTTGGCTGTCCTTATGAACATCACGT-GCCATTGGAACAAATTATACG    482

BSNT_03016___    483 CCTTTCAGAAGCTCTATTTGAATTTGGGATTTCTGAACTTTCGCTTGGAG    532
                     ....||.|||.|.||.||.||..|.|||||....||||||||.||.||||
BL01990___yng    483 GACATCTGAAACGCTGTTCGACATGGGGATCAACGAACTTTCCCTCGGAG    532

BSNT_03016___    533 ATACGATTGGAGCGGCTAATCCCGCCCAAGTGGAAACTGTACTTGAAG--    580
                     |||||||.||.||.||.|||||||..||.||..|||..||.|||||||  
BL01990___yng    533 ATACGATCGGCGCAGCAAATCCCGTACAGGTTCAAAGGGTGCTTGAAGTC    582

BSNT_03016___    581 CTCTTTTGGCACGATTCCC---GGCTAATCAAATTGCCTTGCATTTTCAT    627
                     |||||...|  ||.||.||   .|..|||   ||.|||.|.|||||||||
BL01990___yng    583 CTCTTAAAG--CGCTTTCCAAAAGAGAAT---ATCGCCCTTCATTTTCAT    627

BSNT_03016___    628 GATACGAGAGGAACCGCTCTGGCCAACATGGTCACAGCACTCCAAATGGG    677
                     |||||||||||.|..||.||.|||||||||.||.||||..|..|.|||||
BL01990___yng    628 GATACGAGAGGGATGGCGCTCGCCAACATGATCGCAGCGATGGACATGGG    677

BSNT_03016___    678 CATCACGGTGTTTGACGGCTCGGCA---GGCGGGCTTGGGGGATGCCCAT    724
                     .|||||.||.|||||   |||..||   ||||||||.||.||.||.||.|
BL01990___yng    678 AATCACCGTATTTGA---CTCATCATGCGGCGGGCTGGGCGGCTGTCCTT    724

BSNT_03016___    725 ATGCGCCAGGTTCATCAGGAAACGCCGCAACTGAGGATATCGTGTACATG    774
                     |.||.||.||..|..|.||.||.||.||||||||.|||.|..|.||||||
BL01990___yng    725 ACGCACCGGGAGCCACGGGGAATGCGGCAACTGATGATTTGATCTACATG    774

BSNT_03016___    775 CTTGAACAGATGGATATCAAAACAAATGTAAAGCT-AGAAAAACTGCTAT    823
                     ...|..|||||||..|||.||||....||..|.|| || .||.|||||.|
BL01990___yng    775 TGCGCCCAGATGGGCATCGAAACCGGAGTTGATCTCAG-CAAGCTGCTTT    823

BSNT_03016___    824 CTGCGGCCAAATGGATAGAAGAAAAAATGGGCAAACCGCTGCCGAGCAGA    873
                     |.||.||.||||||||.|||||.||||..||.|.|..||||||.|||.||
BL01990___yng    824 CAGCTGCTAAATGGATCGAAGACAAAACCGGAAGAGAGCTGCCAAGCCGA    873

BSNT_03016___    874 AATTTACAGGTGTTTAAATCA-----------TC-TTGA    900
                     |||||.||||.|..|||||||           || ||||
BL01990___yng    874 AATTTGCAGGCGGCTAAATCAAAGAACTGTTTTCATTGA    912


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