Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03019 and BL01988
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:43
# Commandline: needle
# -asequence dna-align/BSNT_03019___yngH.1.5803.seq
# -bsequence dna-align/BL01988___yngH.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03019___yngH-BL01988___yngH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03019___yngH-BL01988___yngH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03019___yngH
# 2: BL01988___yngH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1435
# Identity: 913/1435 (63.6%)
# Similarity: 913/1435 (63.6%)
# Gaps: 194/1435 (13.5%)
# Score: 2838.0
#
#
#=======================================
BSNT_03019___ 1 ATGTTTACAAAAGTACTGATCGCCAACCGCGGAGAAATTGCAATGAGAAT 50
.||||||..|||||||||||.||||||||.||||||||.||..|..|.||
BL01988___yng 1 TTGTTTAAGAAAGTACTGATTGCCAACCGGGGAGAAATCGCCCTCCGGAT 50
BSNT_03019___ 51 TATCCGAACATG-CAGCCGTCTCGGCATTAAAACGGTTGCGGTTTATTCA 99
.||||||||.|| || .||.|||||.|||.|.||||.|||.||.||.||.
BL01988___yng 51 CATCCGAACTTGTCA-ACGGCTCGGTATTCAGACGGCTGCTGTCTACTCT 99
BSNT_03019___ 100 GAAGCCGACAAGGACGCGCTCCATACAAAAGCCGCTACAGAGGCTTATTT 149
|||||.||...|||..|.||.|||...|||||.||....||.||.|...|
BL01988___yng 100 GAAGCGGATGCGGAGTCCCTGCATGTCAAAGCTGCGGATGAAGCCTGGCT 149
BSNT_03019___ 150 GATCGGAGAATCGAGAGTCAGTGAAAGTTATTTAAATATAGAGAGAATCA 199
||||||..||.||.|.|||||||||||.|||||||||||.||.|.|||||
BL01988___yng 150 GATCGGCAAACCGCGGGTCAGTGAAAGCTATTTAAATATTGAAAAAATCA 199
BSNT_03019___ 200 TAAAGACGGCGAAAAAAGCAAATGCCGACGCGATCCACCCGGGATATGGA 249
|..|.||.||.||||||||....|.|...||.||.||.||||||||.||.
BL01988___yng 200 TCGAAACCGCTAAAAAAGCGGGGGTCTGTGCCATTCATCCGGGATACGGC 249
BSNT_03019___ 250 TTGTTATCAGAAAACAGTCGGTTCGCTGAACGCTG---CAAGCAAGAAAA 296
.||.|.||.||.|||||.||.||.||.|||.|.|| |||| ||.||
BL01988___yng 250 CTGCTTTCCGAGAACAGCCGTTTTGCCGAAAGGTGCCTCAAG---GAGAA 296
BSNT_03019___ 297 CATCGTGTTTATCGGACCTTCCCCTGATATCATCGCAAAGATGGGCAGCA 346
.||...|||||||||.||..|.|||||..|.|||||.||.|||||.||||
BL01988___yng 297 TATTACGTTTATCGGTCCGCCGCCTGACGTTATCGCCAAAATGGGAAGCA 346
BSNT_03019___ 347 AAATTGAAGCGCGAAAAGCAATGGAGGCTGCAGGTGTCCCTGTGGTACCG 396
||||||||||..||.||||.|||||....||.||.||.||.||.||.||.
BL01988___yng 347 AAATTGAAGCAAGACAAGCGATGGAACAAGCCGGGGTTCCCGTCGTTCCC 396
BSNT_03019___ 397 GGCGT-----------------TTCTGAATCCCTCGGAGATATAGAGGCA 429
||||| .||||||| |.|
BL01988___yng 397 GGCGTGACAAAAAGCTTGTCCGGTCTGAAT-----------------GAA 429
BSNT_03019___ 430 GCC--------TGCCGCA-CCGCATGTCAAATCGGCTATCCTGTCATGCT 470
||| |||||.| || |||||||||||.||.|||||
BL01988___yng 430 GCCCGGGCTCTTGCCGAATCC---------ATCGGCTATCCCGTGATGCT 470
BSNT_03019___ 471 GAAAGCTTCAGCGGGCGGAGGGGGCATCGGAATGCAGCGTGTTGA----A 516
.||.|||||....||.||.||.|||||||||||||||| ||| .
BL01988___yng 471 CAAGGCTTCTTTTGGGGGCGGCGGCATCGGAATGCAGC----TGATCCGC 516
BSNT_03019___ 517 AATGAAGAAGC--ATTAAAAAAAGCGTACGAGGGAAACAAAAAGCGCGCA 564
||||| |||| ||||.|||||||.||.||.||.|||.||||.||.||.
BL01988___yng 517 AATGA--AAGCGAATTAGAAAAAGCATATGAAGGCAACCAAAAACGAGCC 564
BSNT_03019___ 565 GCAGATTTTTTCGGTGACGGGTCGATGTATATAGAAAAAGTTATTGAACA 614
||.|||||||||||.||||||.|.|||||.||.||.|||..|||.|||||
BL01988___yng 565 GCCGATTTTTTCGGAGACGGGGCTATGTACATCGAGAAATATATCGAACA 614
BSNT_03019___ 615 TGCGCGTCACATCGAGGTTCAGCTTTTGGCTGATCAACACGGCCATACAG 664
.||..|.||.||||||.|||||.||||..|.||..||.|||...||.|.|
BL01988___yng 615 GGCAAGACATATCGAGATTCAGATTTTAACAGACAAATACGAAAATGCCG 664
BSNT_03019___ 665 TACATCTGTTTGAACGTGATTGCTCTGTTCAGAGGCGCCACCAAAAAGTC 714
|..||||.|..||.||.||.||.||..|||||||.|||||.||||||.||
BL01988___yng 665 TCTATCTTTGGGAGCGGGACTGTTCGATTCAGAGACGCCAGCAAAAAATC 714
BSNT_03019___ 715 ATTGAAGAAGCACCGTCTCCATTTGTAGACGATGAACTAAGAATG----- 759
||.|||||||||||..||||.| ||..|||||| ||..|||
BL01988___yng 715 ATCGAAGAAGCACCTGCTCCGT---TATTCGATGA---AACCATGCGCAC 758
BSNT_03019___ 760 -AAGATTGGGCAAACAGCGGTAAAAGCAGCAAAGGCAATCGGCTATACGA 808
|||.|.||..||.|.||.||.|||||.||...|.|.|||||||||...|
BL01988___yng 759 AAAGCTCGGTGAAGCGGCCGTGAAAGCTGCGCTGTCGATCGGCTATGTCA 808
BSNT_03019___ 809 ACGCAGGCACCATCGAATTCATAGTTGACCAGAAGCAAAATTTTTATTTC 858
||||.||.||.|||||.||..||||.|||.||.||.|..||||||||||.
BL01988___yng 809 ACGCCGGGACAATCGAGTTTTTAGTAGACAAGGAGAATCATTTTTATTTT 858
BSNT_03019___ 859 CTCGAAATGAATACGAGACTGCAAGTTGAACACCCCGTGACTGAAGAAAT 908
||.||.||||||||..|.||||||||.||||||||.|||||.||.|||||
BL01988___yng 859 CTTGAGATGAATACCCGCCTGCAAGTCGAACACCCGGTGACAGAGGAAAT 908
BSNT_03019___ 909 AACAGGCCTGGACTTAGTTGAGCAGCAGCTGCGGATTGCTGCGGGCCATA 958
.|||||.||.|||.|.||.||..|.|||||....||.||.||||| |
BL01988___yng 909 TACAGGGCTTGACCTTGTCGAAGAACAGCTCAATATCGCAGCGGG----A 954
BSNT_03019___ 959 CACTCACATTCTCC-----CAAAAAGACATCCAACGGAACGGGCATGCGA 1003
.|..|.|.||| || ||.||||||||.|..|||.||||.|||||||
BL01988___yng 955 AAACCGCTTTC-CCATAAGCAGAAAGACATTCGGCGGGACGGACATGCGA 1003
BSNT_03019___ 1004 TAGAGGTTCGAATATACGCGGAAGATCCCAAGACCTTCTTCCCGTCACCA 1053
|.||.||..||||.|..||.||||||||.||.||.||.|||||.||.||.
BL01988___yng 1004 TCGAAGTCAGAATCTGTGCCGAAGATCCGAAAACATTTTTCCCTTCGCCG 1053
BSNT_03019___ 1054 GGTACGATCACTGCGTTTTCACTTCCTGACCAA---AAAGGAGTCAGACA 1100
||...|||.||.|...||...||.|||||.||| || .|||.|.||
BL01988___yng 1054 GGGCGGATTACCGACCTTAAGCTGCCTGAGCAACCGAA---TGTCCGTCA 1100
BSNT_03019___ 1101 CGAATGTGCGGTAGCAAAAGACAGCACCG----------TTACCCCTTTT 1140
.|||||.||.| ||||.||| |.|||||.|.|
BL01988___yng 1101 TGAATGCGCAG----------CAGCCCCGGGTATGACTATCACCCCGTAT 1140
BSNT_03019___ 1141 TATGACCCGATGATCGCTAAGATGATTGTCAAAGGCCAA--ACCAGAACA 1188
||.|||||||||||.||.||||||||.|||||||| || |.||||..|
BL01988___yng 1141 TACGACCCGATGATTGCCAAGATGATCGTCAAAGG--AAGCAGCAGAGAA 1188
BSNT_03019___ 1189 GAAGCAAT-TGAAAAACTAGAGACAT---------CGC-TTCGCGACTAT 1227
|||||.|| || .|||| ||| |||.| |.|||
BL01988___yng 1189 GAAGCCATCTG----------CACATTGGCCGAAGCGCTTTCAC-AATAT 1227
BSNT_03019___ 1228 CGTGTAGAGGGAATCAAAACAAATCTTCCGCTTCTCATACAGGCTGCGGC 1277
|..||..|.||.||.|||||.||..|||||||.|| ||
BL01988___yng 1228 CAAGTGAAAGGCATTAAAACGAACATTCCGCTCCT---------TG---- 1264
BSNT_03019___ 1278 AACAAAGGCATTTAAAG-----------------AAGGGGATGTCACGAC 1310
|||.||||..||| ||||.|..|||...||
BL01988___yng 1265 ----AAGACATTGTAAGTTCTGACGAATTCCGAAAAGGCGGGGTCCAAAC 1310
BSNT_03019___ 1311 TGACTTTTTGAAACAACACCTATAA---------- 1335
.||.||| |.||....||||.|
BL01988___yng 1311 CGATTTT----ATCAGTCGCTATCAGTCAAAATGA 1341
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