Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02248 and BL01974
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:45
# Commandline: needle
# -asequence dna-align/BSNT_02248___ykoS.1.5803.seq
# -bsequence dna-align/BL01974___ykoR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02248___ykoS-BL01974___ykoR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02248___ykoS-BL01974___ykoR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02248___ykoS
# 2: BL01974___ykoR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1789
# Identity: 1243/1789 (69.5%)
# Similarity: 1243/1789 (69.5%)
# Gaps: 182/1789 (10.2%)
# Score: 4099.0
#
#
#=======================================
BSNT_02248___ 1 ATGTTACG--ATT---------GATGAGACAACAAAAAAAAGAAACATAT 39
||..|| ||| |.|||| ||.|.|||||..|.||.|
BL01974___yko 1 --GTGTCGTTATTCGTCAAAAAGTTGAG----CAGAGAAAAGCGATATTT 44
BSNT_02248___ 40 TATCTCTGGATCGCATT-------ATTTCTTCTTTTATTGTATGTATCC- 81
.||.| ||||||| | |||||| |.|||| |||
BL01974___yko 45 GATTT-----TCGCATTCAGTGTCA-TTCTTC------TCTATG--TCCT 80
BSNT_02248___ 82 -CCGCTTTTTATTTTAAAGGAAGATGCCCATATCCGGGTCCACGATAATT 130
|||||||..||.|||||.|||||.||.||||||||.||.||.||.||..
BL01974___yko 81 TCCGCTTTACATATTAAATGAAGACGCTCATATCCGTGTGCATGACAACC 130
BSNT_02248___ 131 TAGATTCCAACATCGCTTGGTACAAGGTTTTGGCCGATAGCGGAGAA--- 177
|.||||||||.|||||.|||||.|||||..|||||||.||||| |.|
BL01974___yko 131 TGGATTCCAATATCGCCTGGTATAAGGTGCTGGCCGAAAGCGG-GCAGCT 179
BSNT_02248___ 178 -ATCGTCGGCAAGGTTGACGCTGCCATTCCGCAAATCATTAACGGGCTGC 226
.|||.|||| |||.|.||.|.|||||||||||||||.||||||.|||
BL01974___yko 180 GCTCGGCGGC---GTTAAAGCCGTCATTCCGCAAATCATCAACGGGTTGC 226
BSNT_02248___ 227 CCCGGGATGCCTTTGGCACCGAGTGGAGCGGAATTGTTTGGCTCCATGCT 276
|.|||||.||.|..||.||.||.||||||||.|||||.|||||.||.||.
BL01974___yko 227 CGCGGGACGCTTACGGAACGGAATGGAGCGGCATTGTCTGGCTTCACGCC 276
BSNT_02248___ 277 TTCTTTTCTTCCATGACCGCCTATGCAATAAGCCAGACGGTTACAAGAGT 326
||.|||.||||.||||||||.|||||..|||||||||||.|.||.||.||
BL01974___yko 277 TTGTTTCCTTCGATGACCGCATATGCTTTAAGCCAGACGATCACGAGGGT 326
BSNT_02248___ 327 TGTCGCTTTTTTTGGAATGTATGTGCTGCTGAAGAAACATATAATCCCGG 376
..|.||.|||.|.||.|||||..||||||||||.|..|||.|.||.|..|
BL01974___yko 327 GTTTGCCTTTGTCGGGATGTACCTGCTGCTGAAAAGCCATGTGATTCGCG 376
BSNT_02248___ 377 AACCAAAAGCGGCTTTCATCCGAATTGGCGTATCGCTTGCATTTGCCTTA 426
|...|||.|||..|||||||.||||.|.|||||||||.|||||||||.|.
BL01974___yko 377 ATGAAAAGGCGTATTTCATCAGAATCGCCGTATCGCTGGCATTTGCCCTG 426
BSNT_02248___ 427 ACACCGTTCTGGCCTTCGGGAATGCTGAGTACGCTTGGGTACCCTTTGGC 476
|||||.||.||||||||.||||||||.|||||||||||..||||||||||
BL01974___yko 427 ACACCCTTTTGGCCTTCAGGAATGCTTAGTACGCTTGGTCACCCTTTGGC 476
BSNT_02248___ 477 ACTGTGGGCTTTTTTAAATATCCGAAAAGGGGATATTTCATGGAGAGAGT 526
..|.||||||||||||||.|||.|...||||.|....|||||||.|||||
BL01974___yko 477 CTTATGGGCTTTTTTAAACATCAGGGCAGGGAACGACTCATGGAAAGAGT 526
BSNT_02248___ 527 GGCTGACGC-TGGGCTTGCTCCCTCTATACTCAAGCTTTGTTCTAGGCTT 575
||...||.| ||.|||| .|.||.||.||||||||||||||.||.||.||
BL01974___yko 527 GGTCAACCCTTGCGCTT-TTACCGCTTTACTCAAGCTTTGTGCTCGGTTT 575
BSNT_02248___ 576 CTTCTTTTTCCTGGCAGGGATGGCGTGTT------TTTGGCTGTATGATG 619
||||||||||||.|| .|.||| || |||||||.||||||
BL01974___yko 576 CTTCTTTTTCCTTGC-----CGCCGT-TTCGCTGATTTGGCTTTATGAT- 618
BSNT_02248___ 620 CCATT----ACAAAAAGAAGATGGAA--TTTGATGTTCTTAGGCAGTATT 663
|| |||||..|.||.|..|| ||.|.| ||| |.||.|||||.
BL01974___yko 619 ---TTGGTCACAAAGCGCAGCTTTAACCTTCGCT-TTC-TCGGAAGTATC 663
BSNT_02248___ 664 GCATTTATGACGAGTATCTATCTTTTCG-TTGAATATCGGCTTGTCTATT 712
||..|||||||..|.||.| ||.|..|| |.|||||.||||||||.||||
BL01974___yko 664 GCTCTTATGACAGGCATAT-TCCTGGCGATAGAATACCGGCTTGTTTATT 712
BSNT_02248___ 713 CGAT----GCTGTTTGAACA--CGCACCGATGCATCGTATCGAATTTATC 756
||.| ||| .|| ||.|.||||||||||..|.||||||||.
BL01974___yko 713 CGGTTTTCGCT------TCAGGCGAAACGATGCATCGCGTTGAATTTATT 756
BSNT_02248___ 757 TCATCCAGGCATGACGT--TTGGCATTCTCTTCGGCTATCCGTAAAAAAC 804
||.||||||||||||.| || |||||..|||||.|.|||.|.|||||.
BL01974___yko 757 TCGTCCAGGCATGACATCCTT--CATTCGTTTCGGTTGTCCTTTAAAAAT 804
BSNT_02248___ 805 TTTGT-CTATGGCCATAATCATGTGATGACCGTTCATACCGTTGTCATCC 853
||.|| || .|||||.||||||||.||||||||.|||||.|..||.||.|
BL01974___yko 805 TTCGTGCT-CGGCCACAATCATGTCATGACCGTCCATACGGCAGTGATAC 853
BSNT_02248___ 854 TTCC---GATCCTGCT---------GGTCGTATTTGCTGCTCTGCTGTTC 891
|.|| |||..|||| |.||||..|||||...|
BL01974___yko 854 TGCCTTTGATTGTGCTCACTTTCGGGCTCGTCGTTGCTAGAC-------- 895
BSNT_02248___ 892 AAACG---AAATCGGACAAAGC-CAGAAAA--TGTTTATCTGTTTTTATG 935
|||| |||.||| |.|||| .|||||| ||||.||| |||||||.
BL01974___yko 896 -AACGCAAAAAGCGG-CCAAGCGAAGAAAAGCTGTTCATC--TTTTTATT 941
BSNT_02248___ 936 TGTGCTTAATTACG-GATTGTCATTATGGTATGCGTTTTGGTTCAACAAA 984
..|..|.|||||.| |.|| ||.|||||||||||..|.|||||||||||.
BL01974___yko 942 CATTTTAAATTATGCGCTT-TCTTTATGGTATGCCCTCTGGTTCAACAAG 990
BSNT_02248___ 985 ATTTGGGCTGTTCCAAAGCAGAAA-------TTTGCCTTTTTAGCAGAAT 1027
.|.|||||..|||||||| |||| |.|||.|| |.|.||
BL01974___yko 991 CTGTGGGCGCTTCCAAAG--GAAAAGATCAGTCTGCTTT-----CGGCAT 1033
BSNT_02248___ 1028 TTAATTTTGCCCGTTTTCATTTTCTTCGGCCGCTTGTTATATACGTGAGC 1077
|.|||||.||||||||.||.|||.|.||.||.|||||.|||||||..|||
BL01974___yko 1034 TCAATTTCGCCCGTTTCCACTTTTTGCGCCCTCTTGTGATATACGCAAGC 1083
BSNT_02248___ 1078 TTTGC----GCTTGCTTTATATCTCATTTGGCGGATGGGGAAAGGATGGA 1123
||||| ||.||||..|||| |.|||...||||||||..|||||
BL01974___yko 1084 TTTGCCGTTGCATGCTACATAT----TGTGGAAAATGGGGAAGAGATGG- 1128
BSNT_02248___ 1124 AATGGC---TTGTGTACGCCGCAGTCGCT----GCACAGCTGATGGTG-- 1164
.||| ||||..|.|||||| || ||.||||||.|.|||
BL01974___yko 1129 --CGGCGTTTTGTTCATGCCGCA----CTAATCGCCCAGCTGCTTGTGCT 1172
BSNT_02248___ 1165 --TTGGCGCCTTTTAATGAAGAATATACGTATGGCGTTCAT--TACAACG 1210
|| ||.|||.|||||||....||.||.|||| ||| .||.|||
BL01974___yko 1173 TATT----CCGTTTCATGAAGAGCTGACTTACGGCG--CATACCACCACG 1216
BSNT_02248___ 1211 CGCCGA-CATTCAAGGAGTTTTATGCATCGGAGCAATTCAAAGAGATTAA 1259
|.||.| |.||| .|||.|||||||||||.||.||.||.|||.||||.||
BL01974___yko 1217 CCCCAAGCTTTC-GGGAATTTTATGCATCAGATCAGTTTAAACAGATCAA 1265
BSNT_02248___ 1260 GGAATATATCGGACGTCCGCAGGATTCGTACAGGGTGGCGAGCATCGGAC 1309
...||..|||||.|||||....|||||.|||.||||||||||||||||.|
BL01974___yko 1266 ACGATTCATCGGCCGTCCTACCGATTCCTACCGGGTGGCGAGCATCGGCC 1315
BSNT_02248___ 1310 TGCATCCGTCTATCGCCCAATATAACGGGTTTTATACGTTAGATACGTAT 1359
||||||||.|.||.||.||.||||||||.||.||.||..|.|||||||||
BL01974___yko 1316 TGCATCCGGCGATTGCGCAGTATAACGGCTTCTACACACTTGATACGTAT 1365
BSNT_02248___ 1360 AACAATCTGTATCCGCTTTCATATAAATATGAATTTAGGAAAATCATCGA 1409
..||||.|.|||||.||...|||.||.|||.||||..||||||||||||.
BL01974___yko 1366 GCCAATATTTATCCACTGAAATACAAGTATCAATTCCGGAAAATCATCGC 1415
BSNT_02248___ 1410 AAAAGAGCTGGAAAAAAATTCTCGG--CTGAAACAATACTTTGATGAATG 1457
.||||||||.||.|||||| .||| |||||.|..||.||.|||||.||
BL01974___yko 1416 CAAAGAGCTTGATAAAAAT--CCGGCCCTGAAGCGCTATTTCGATGAGTG 1463
BSNT_02248___ 1458 GGGCAGCCGCTGCTACCTTTTTGTCGATGAACTCGGTAAACGATATGATT 1507
|||.||||||||||||.|.|||||.||.||.||.||.||||..||.|..|
BL01974___yko 1464 GGGGAGCCGCTGCTACTTGTTTGTTGACGAGCTTGGAAAACATTACGCGT 1513
BSNT_02248___ 1508 TCAAAAAGAACTCGAAGAAAACGATCAACAACCTTCAATTAAATACAGAT 1557
|||||||||.|.|.|||||||..||||..|||||..|.|||||.||.||.
BL01974___yko 1514 TCAAAAAGAGCACAAAGAAAAAAATCACGAACCTGGAGTTAAACACTGAA 1563
BSNT_02248___ 1558 GTATTTAAAAAAATGGGCGGACGGTACATTTTTTCTTCAGTTCCGATCAT 1607
|.|||.|||||||||||.||||..||.||||||||||||||||||||.||
BL01974___yko 1564 GCATTCAAAAAAATGGGGGGACAATATATTTTTTCTTCAGTTCCGATTAT 1613
BSNT_02248___ 1608 GAATGCTGAACAAAACCATCTCGCGCTCGTAAAGACGTTTGA-CCATAAA 1656
||||||.|||||||||.|.||.|||.|..||||| ||.||.| |||....
BL01974___yko 1614 GAATGCAGAACAAAACAAGCTTGCGTTTTTAAAG-CGGTTCAGCCACCCG 1662
BSNT_02248___ 1657 GATTCCGCCTGGCGCATTTATTTATATGAAACAAGATAA 1695
.|.|||||.|||..|||.|||.||||||||.|.|.||||
BL01974___yko 1663 CAGTCCGCTTGGAACATCTATGTATATGAAGCGAAATAA 1701
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