Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05140 and BL01954
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:15
# Commandline: needle
# -asequence dna-align/BSNT_05140___yvbU.1.5803.seq
# -bsequence dna-align/BL01954___cysL.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05140___yvbU-BL01954___cysL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05140___yvbU-BL01954___cysL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05140___yvbU
# 2: BL01954___cysL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1136
# Identity: 492/1136 (43.3%)
# Similarity: 492/1136 (43.3%)
# Gaps: 502/1136 (44.2%)
# Score: 818.5
#
#
#=======================================
BSNT_05140___ 1 ---------------------------ATGACCATTACACAATTAAAGGT 23
.|.|||.||.||.||.|.|
BL01954___cys 1 GTGCATTATGATGCGCTGAAGACATTCGTTACCCTTGCAGAAGTCA---- 46
BSNT_05140___ 24 TTTTGTGAAAATAGCTGAAACGGGAAGCTTTACAAAAGCGGGTCAGGCGC 73
||||| ||.||.|||.|||...||...|
BL01954___cys 47 -------AAAAT----------------TTCACGAAAACGGCCGAGCTTC 73
BSNT_05140___ 74 TGAACATGACACAGCCG-GCTGTCAGCCATGC-GATTTCTGCGATCGAAG 121
|...||||.|.|||||| || ||.|| ||||| .||| ||
BL01954___cys 74 TTCTCATGTCGCAGCCGAGC-GTAAG-CATGCACATT----------AA- 110
BSNT_05140___ 122 CTGAGCTTGATGTAAAG-----CTG-----ATCATTCGTGACCG----CC 157
..|.||||| .|||| |.| ||.||| |||.|| ||
BL01954___cys 111 -AAATCTTGA--AAAAGAATTCCAGACGAAATTATT--TGAACGCTCTCC 155
BSNT_05140___ 158 GCAATGGCCTGAT-----------GCTGACAG----------ATACG--- 183
|.||| || ||.|||.| |||||
BL01954___cys 156 GAAAT------ATTTAAAAATCACGCCGACCGGTGAAATTTTATACGACC 199
BSNT_05140___ 184 --GGAAAACA---GATCTTAGTACACAT-TAGAGAAGTCTTAAA--AGGC 225
|..||||| |||| || ||| || .||| .||| ||||
BL01954___cys 200 GCGCCAAACAAATGATC-----AC-CATCTA-TGAA----CAAACGAGGC 238
BSNT_05140___ 226 A--------TTGA-----AAAAGTTGAGCAGGTAGCAGC-AGCGGAAAAA 261
| |.|| |.||.|.||.|| .|| || |||.||||
BL01954___cys 239 AGGACATTCTCGATCACCACAACTCGATCA--AAG--GCGAGCTGAAA-- 282
BSNT_05140___ 262 GGGCTTGAACTGGGAACGATCCATATCGGCACA---TTCTCAACTGCCTC 308
||||||.|| |||.||| ||
BL01954___cys 283 ------------------------ATCGGCGCAAGCTTCACAA-----TC 303
BSNT_05140___ 309 GGCT---TATTTTATGCCGAAGCTGATCAGTGAATTTAAACAAAAATATC 355
|| | |||.||.||||...|||..||...||..||.||.|..||||||
BL01954___cys 304 GG-TGAATATATTTTGCCTTCGCTCCTCTTCGACCTTCAAAAGGAATATC 352
BSNT_05140___ 356 CGAAACTTGAGCTTGTGCTGCACGAGGGAACTGTAAATGAAGTCAAGG-- 403
|..||||.|||| ||||||
BL01954___cys 353 CTGAACTCGAGC------------------------------TCAAGGCC 372
BSNT_05140___ 404 ---AGTGGCTTCATACGCGGATGATAGATGTTGGGATTCTT----CTGTA 446
|.||| |.||.|||| |.|.||..||..||.|.| |||||
BL01954___cys 373 GTCATTGG----AAACACGGA--AGAAATCGTGCAATCCGTCCGCCTGTA 416
BSNT_05140___ 447 TCCAACAGAGGAGAT----------GGAGTACATTCATTTGAAAA----- 481
||| ||.|||.|| |.||.|||..||..||||||
BL01954___cys 417 --CAA-AGTGGACATCGGCTTGATCGAAGGACAGACAAATGAAAAAGAGC 463
BSNT_05140___ 482 ---------------------AAGACAAA------ATGGCTGTCGTGC-T 503
|.|||.|| ||.|| ||| |
BL01954___cys 464 TTTCTGTACACGCCTTTATGCAGGACGAATTATTCATCGC-----TGCTT 508
BSNT_05140___ 504 CAGGGACGATCACCCGCTTGCCGGTCATTCGGCCATTACGCTGAA-AGAT 552
||.| ||||||.||||||| |||||| || ||..
BL01954___cys 509 CAAG--CGATCATCCGCTTG---------CGGCCA--------AACAGGA 539
BSNT_05140___ 553 CTTGACCATGAACCGAT----------GATCGTCTGTGACGGAGGCTATG 592
|.||||.|| ..||||| .|.|||..||.||| .|| |
BL01954___cys 540 CGTGACAAT-CTCCGATCTGCAAAATCAAACGTGGGTAACG--CGC---G 583
BSNT_05140___ 593 AATCACCATTTGTCGATATGTTCAGGCAGGCGGGCG----CT---ACGCT 635
|| |||| |.||||||| |..||| || ||..|
BL01954___cys 584 AA---------GTCG----GCTCAGGCA--CACGCGAATACTTAAACCAT 618
BSNT_05140___ 636 G-CACCCAGCTTTC--ACGGTCTATAACATCAACACCTCGATCAGT---- 678
| ||.| |.||| |||||.|| ||..|.|| ||| ||
BL01954___cys 619 GTCATC---CGTTCAAACGGTTTA-AAAGTGAA-------ATC-GTTTCT 656
BSNT_05140___ 679 -ATGATCAG-AG-AAGGCCTGGGTCTCGCGATTTTATC--AGAAATGTCC 723
|.|||||| || || ||.||| .||| |||||.|..|
BL01954___cys 657 GACGATCAGCAGCAA--CCAGGG-----------GATCAAAGAAACGCTC 693
BSNT_05140___ 724 ATGTCGGGGATGCCGCTGCCGGA-------GCATGTGGTGACCCGGGA-- 764
|||.||||.|| |||| .|.||| |.|||
BL01954___cys 694 ATGACGGGCAT--------CGGACTGTCTCTCCTGT-------CTGGAAG 728
BSNT_05140___ 765 ----ATTGGACCCGCAGGTATACCGTGATGTGCAG---------CTTGCT 801
|||| |..|.|||||.||| |||.|.
BL01954___cys 729 CGTCATTG-------------AAAGAGATGTACAGCACGGAAACCTTTCC 765
BSNT_05140___ 802 GT--TCCGTCGCT-----------------AAAGGAGGCTT--CT----- 825
|| |||| ||| |.||||.|||| ||
BL01954___cys 766 GTTATCCG--GCTGAAAAATCAAACCTTTAACAGGACGCTTTCCTATATA 813
BSNT_05140___ 826 -------CTGGC-----GGCTAAG-------------CTCTTTATTGAGA 850
|||.| ||..||| | ||||||| |
BL01954___cys 814 TATTCACCTGTCATGCAGGACAAGAAAAATGTGAAAAC-CTTTATT---A 859
BSNT_05140___ 851 TGGCT-------AAGGAGCTGTTTGGAGCAGAATAA 879
..||| ||.||.|...||.|| |||||
BL01954___cys 860 ACGCTTTGAACAAAAGAACATCTTCGA----AATAA 891
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