Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05141 and BL01951

See Amino acid alignment / Visit BSNT_05141 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:15
# Commandline: needle
#    -asequence dna-align/BSNT_05141___yvbV.1.5803.seq
#    -bsequence dna-align/BL01951___yoaV.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05141___yvbV-BL01951___yoaV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05141___yvbV-BL01951___yoaV.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05141___yvbV
# 2: BL01951___yoaV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1124
# Identity:     512/1124 (45.6%)
# Similarity:   512/1124 (45.6%)
# Gaps:         457/1124 (40.7%)
# Score: 894.5
# 
#
#=======================================

BSNT_05141___      1 ATGAAGCAGCTCTCAAAAAC----GCGGA-CAGCTCTCCTGCTCGCATTT     45
                     |||       |.|.||..||    |.||| ||.||||             
BL01951___yoa      1 ATG-------TTTAAAGTACTTTTGGGGATCATCTCT-------------     30

BSNT_05141___     46 CTCGTCA---TCATGTGGGGCGTCAAT---TG---GCCGCTGTCCAAAGC     86
                        ||.|   |.||.||||| ||  ||   ||   |.||.||   |||..
BL01951___yoa     31 ---GTAACGCTGATTTGGGG-GT--ATACCTGGGTGACGATG---AAAAT     71

BSNT_05141___     87 CGCGCTCGCCTATTCTCCGCCATTATTGTTCGCGGGCATCCGAACGCTGA    136
                     |||..||.|..|...|||.||..|.||.||..|||.|.|.||   ||||.
BL01951___yoa     72 CGCAATCACTGACATTCCCCCTGTTTTATTTTCGGCCCTGCG---GCTGT    118

BSNT_05141___    137 TCGGCGG-GCT-----TTTATTAGTCATTGTCGCACTGCCGCGTATTCAT    180
                     ||...|| |||     |||.||.||.|||.||             ||.||
BL01951___yoa    119 TCATTGGAGCTGTTCCTTTGTTTGTGATTCTC-------------TTGAT    155

BSNT_05141___    181 AAATTACGCTTAAAAGAAACGT-----------GGCCGAT--------TT    211
                     .||  |.|    ||.|||||||           ||...||        ||
BL01951___yoa    156 CAA--AGG----AAGGAAACGTTCAATAGGAAAGGAGAATATCAAGCATT    199

BSNT_05141___    212 ATCTTGTTTCTGCTCTTTTAAAT---ATTACATTATTCTACGGCCTGCAA    258
                     ||| ||.|..||...||.|..||   .|||..||||              
BL01951___yoa    200 ATC-TGGTGATGAGTTTATTGATGGGTTTAGGTTAT--------------    234

BSNT_05141___    259 ACGATCGGGCTGAATTATCTTCCGGCCGGCCTGTT------TTCTG--CA    300
                        ||.|||.||  |||.|||.||||..| |.|||      |||.|  .|
BL01951___yoa    235 ---ATGGGGGTG--TTAACTTACGGCATG-CAGTTTGTCGATTCGGGAAA    278

BSNT_05141___    301 ATCGTCTTCTTCCAGCCTGTTCTGATGGGTGTA------------TTTTC    338
                     |.|||           |||||    |.||||||            ||||.
BL01951___yoa    279 AACGT-----------CTGTT----TTGGTGTACACCATGCCTATTTTTG    313

BSNT_05141___    339 TTGGCTGTGGC-TCGG---------------CG----AATCCATGTTTGT    368
                     || .||||  | ||.|               ||    ||||.||||.|.|
BL01951___yoa    314 TT-ACTGT--CATCAGTCATTTTAAATTAAACGAGAAAATCAATGTGTAT    360

BSNT_05141___    369 AATGAAAGTGATCGGGCTCATCCTCGGTTTTGCGGGAGTAGCCGTCATTA    418
                     ||                .||.||||||||                ||| 
BL01951___yoa    361 AA----------------AATGCTCGGTTT----------------ATT-    377

BSNT_05141___    419 GTGCTG-------CGGGCTTT--------------GGCGG------GCAT    441
                      |.|||       |||.||||              |||||      ||||
BL01951___yoa    378 -TTCTGGTCTGATCGGTCTTTTGTTTATATTAGGGGGCGGGATTCTGCAT    426

BSNT_05141___    442 ATTTCT------GTCATTGGGATTCTTCTG----GCTCT-CG--------    472
                     .||..|      |||||    |||    ||    |||.| ||        
BL01951___yoa    427 GTTGATCAAAACGTCAT----ATT----TGGAGAGCTTTGCGTTTTAATC    468

BSNT_05141___    473 GCTCCGCAATCAGCTGGGCGC-TCGGGACGGTATATA------------T    509
                     ||..|||  ||||||||| || |||..|..||.||.|            |
BL01951___yoa    469 GCAGCGC--TCAGCTGGG-GCGTCGCCAATGTTTACAGCAAACTGAAATT    515

BSNT_05141___    510 GAAAAAAACAGGCAGCCGCGTCGATTCCATCTGGATGGTCGCTCTGCAGC    559
                     .|||||.||||..|       .|||| |||.||.||    ||...|||||
BL01951___yoa    516 CAAAAATACAGATA-------TGATT-CATATGAAT----GCATGGCAGC    553

BSNT_05141___    560 TGACGATC-----GGAAGCG----TGTTTCTGCTTATATCCGGCTTTTGG    600
                     |     ||     || ||||    ||||..||.||.|.|    |||||..
BL01951___yoa    554 T-----TCTCACAGG-AGCGGTGATGTTATTGATTTTCT----CTTTTAT    593

BSNT_05141___    601 ACAGAAAGCTTTTCGG-CGATCCAATGGACAGCTCCGTTTATCACGAGC-    648
                     ||.|.||.|.|..||| ||||.||.|||.||        .||.|  ||| 
BL01951___yoa    594 ACTGGAACCGTCCCGGCCGATTCACTGGTCA--------AATGA--AGCA    633

BSNT_05141___    649 --CTGCTGTTCATCTCCGTATTCGTTATCG-------CGCT-CGGCTGGC    688
                       ||  ||    ||||  ||||..|||.||       |.|| ||||    
BL01951___yoa    634 ATCT--TG----TCTC--TATTGTTTAACGGTTTATTCTCTACGGC----    671

BSNT_05141___    689 TTGTCTTTTTTACGCTTGTC----GGTTCAGG--------------CGAA    720
                            |||.|||.|.|||    ||||..||              ||||
BL01951___yoa    672 -------TTTGACGTTCGTCATTTGGTTTTGGATACTGAATCAAATCGAA    714

BSNT_05141___    721 GC-----AAGCAAGGTCGCAT--CTTATACTTTTTTGATTCCGCTCATAT    763
                     ||     |||||   ||| ||  |||..|  |.||||.|.|||    |||
BL01951___yoa    715 GCGTCGAAAGCA---TCG-ATGGCTTTAA--TGTTTGTTCCCG----TAT    754

BSNT_05141___    764 CAATCGT-------GGCCAGCTCCATTTTCCTGCATGAACCGCTCACCCT    806
                     .|..|.|       |||..|||.||    .||||||||||||.||||..|
BL01951___yoa    755 TAGGCCTTTTGTTCGGCTGGCTGCA----GCTGCATGAACCGGTCACATT    800

BSNT_05141___    807 TAGCCTCTTGGCAGGGCTGCTGCTGATTG------TCACGA---GCATCT    847
                     .|||.||               |||||.|      |||.||   |||||.
BL01951___yoa    801 CAGCATC---------------CTGATCGGCGCATTCATGATCTGCATCG    835

BSNT_05141___    848 G---TCTCGTGAATACAAAATCAAAAGCGCAGAAAGCTGCGGCGATTGGT    894
                     |   |.|..||||||| ..|||||                         |
BL01951___yoa    836 GCATTTTTATGAATAC-TTATCAA-------------------------T    859

BSNT_05141___    895 ATAAACGAGAAAGCTGCACAATAA    918
                     .||||    |||| ||     |||
BL01951___yoa    860 TTAAA----AAAG-TG-----TAA    873


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