Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05141 and BL01951
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:15
# Commandline: needle
# -asequence dna-align/BSNT_05141___yvbV.1.5803.seq
# -bsequence dna-align/BL01951___yoaV.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05141___yvbV-BL01951___yoaV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05141___yvbV-BL01951___yoaV.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05141___yvbV
# 2: BL01951___yoaV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1124
# Identity: 512/1124 (45.6%)
# Similarity: 512/1124 (45.6%)
# Gaps: 457/1124 (40.7%)
# Score: 894.5
#
#
#=======================================
BSNT_05141___ 1 ATGAAGCAGCTCTCAAAAAC----GCGGA-CAGCTCTCCTGCTCGCATTT 45
||| |.|.||..|| |.||| ||.||||
BL01951___yoa 1 ATG-------TTTAAAGTACTTTTGGGGATCATCTCT------------- 30
BSNT_05141___ 46 CTCGTCA---TCATGTGGGGCGTCAAT---TG---GCCGCTGTCCAAAGC 86
||.| |.||.||||| || || || |.||.|| |||..
BL01951___yoa 31 ---GTAACGCTGATTTGGGG-GT--ATACCTGGGTGACGATG---AAAAT 71
BSNT_05141___ 87 CGCGCTCGCCTATTCTCCGCCATTATTGTTCGCGGGCATCCGAACGCTGA 136
|||..||.|..|...|||.||..|.||.||..|||.|.|.|| ||||.
BL01951___yoa 72 CGCAATCACTGACATTCCCCCTGTTTTATTTTCGGCCCTGCG---GCTGT 118
BSNT_05141___ 137 TCGGCGG-GCT-----TTTATTAGTCATTGTCGCACTGCCGCGTATTCAT 180
||...|| ||| |||.||.||.|||.|| ||.||
BL01951___yoa 119 TCATTGGAGCTGTTCCTTTGTTTGTGATTCTC-------------TTGAT 155
BSNT_05141___ 181 AAATTACGCTTAAAAGAAACGT-----------GGCCGAT--------TT 211
.|| |.| ||.||||||| ||...|| ||
BL01951___yoa 156 CAA--AGG----AAGGAAACGTTCAATAGGAAAGGAGAATATCAAGCATT 199
BSNT_05141___ 212 ATCTTGTTTCTGCTCTTTTAAAT---ATTACATTATTCTACGGCCTGCAA 258
||| ||.|..||...||.|..|| .|||..||||
BL01951___yoa 200 ATC-TGGTGATGAGTTTATTGATGGGTTTAGGTTAT-------------- 234
BSNT_05141___ 259 ACGATCGGGCTGAATTATCTTCCGGCCGGCCTGTT------TTCTG--CA 300
||.|||.|| |||.|||.||||..| |.||| |||.| .|
BL01951___yoa 235 ---ATGGGGGTG--TTAACTTACGGCATG-CAGTTTGTCGATTCGGGAAA 278
BSNT_05141___ 301 ATCGTCTTCTTCCAGCCTGTTCTGATGGGTGTA------------TTTTC 338
|.||| ||||| |.|||||| ||||.
BL01951___yoa 279 AACGT-----------CTGTT----TTGGTGTACACCATGCCTATTTTTG 313
BSNT_05141___ 339 TTGGCTGTGGC-TCGG---------------CG----AATCCATGTTTGT 368
|| .|||| | ||.| || ||||.||||.|.|
BL01951___yoa 314 TT-ACTGT--CATCAGTCATTTTAAATTAAACGAGAAAATCAATGTGTAT 360
BSNT_05141___ 369 AATGAAAGTGATCGGGCTCATCCTCGGTTTTGCGGGAGTAGCCGTCATTA 418
|| .||.|||||||| |||
BL01951___yoa 361 AA----------------AATGCTCGGTTT----------------ATT- 377
BSNT_05141___ 419 GTGCTG-------CGGGCTTT--------------GGCGG------GCAT 441
|.||| |||.|||| ||||| ||||
BL01951___yoa 378 -TTCTGGTCTGATCGGTCTTTTGTTTATATTAGGGGGCGGGATTCTGCAT 426
BSNT_05141___ 442 ATTTCT------GTCATTGGGATTCTTCTG----GCTCT-CG-------- 472
.||..| ||||| ||| || |||.| ||
BL01951___yoa 427 GTTGATCAAAACGTCAT----ATT----TGGAGAGCTTTGCGTTTTAATC 468
BSNT_05141___ 473 GCTCCGCAATCAGCTGGGCGC-TCGGGACGGTATATA------------T 509
||..||| ||||||||| || |||..|..||.||.| |
BL01951___yoa 469 GCAGCGC--TCAGCTGGG-GCGTCGCCAATGTTTACAGCAAACTGAAATT 515
BSNT_05141___ 510 GAAAAAAACAGGCAGCCGCGTCGATTCCATCTGGATGGTCGCTCTGCAGC 559
.|||||.||||..| .|||| |||.||.|| ||...|||||
BL01951___yoa 516 CAAAAATACAGATA-------TGATT-CATATGAAT----GCATGGCAGC 553
BSNT_05141___ 560 TGACGATC-----GGAAGCG----TGTTTCTGCTTATATCCGGCTTTTGG 600
| || || |||| ||||..||.||.|.| |||||..
BL01951___yoa 554 T-----TCTCACAGG-AGCGGTGATGTTATTGATTTTCT----CTTTTAT 593
BSNT_05141___ 601 ACAGAAAGCTTTTCGG-CGATCCAATGGACAGCTCCGTTTATCACGAGC- 648
||.|.||.|.|..||| ||||.||.|||.|| .||.| |||
BL01951___yoa 594 ACTGGAACCGTCCCGGCCGATTCACTGGTCA--------AATGA--AGCA 633
BSNT_05141___ 649 --CTGCTGTTCATCTCCGTATTCGTTATCG-------CGCT-CGGCTGGC 688
|| || |||| ||||..|||.|| |.|| ||||
BL01951___yoa 634 ATCT--TG----TCTC--TATTGTTTAACGGTTTATTCTCTACGGC---- 671
BSNT_05141___ 689 TTGTCTTTTTTACGCTTGTC----GGTTCAGG--------------CGAA 720
|||.|||.|.||| ||||..|| ||||
BL01951___yoa 672 -------TTTGACGTTCGTCATTTGGTTTTGGATACTGAATCAAATCGAA 714
BSNT_05141___ 721 GC-----AAGCAAGGTCGCAT--CTTATACTTTTTTGATTCCGCTCATAT 763
|| ||||| ||| || |||..| |.||||.|.||| |||
BL01951___yoa 715 GCGTCGAAAGCA---TCG-ATGGCTTTAA--TGTTTGTTCCCG----TAT 754
BSNT_05141___ 764 CAATCGT-------GGCCAGCTCCATTTTCCTGCATGAACCGCTCACCCT 806
.|..|.| |||..|||.|| .||||||||||||.||||..|
BL01951___yoa 755 TAGGCCTTTTGTTCGGCTGGCTGCA----GCTGCATGAACCGGTCACATT 800
BSNT_05141___ 807 TAGCCTCTTGGCAGGGCTGCTGCTGATTG------TCACGA---GCATCT 847
.|||.|| |||||.| |||.|| |||||.
BL01951___yoa 801 CAGCATC---------------CTGATCGGCGCATTCATGATCTGCATCG 835
BSNT_05141___ 848 G---TCTCGTGAATACAAAATCAAAAGCGCAGAAAGCTGCGGCGATTGGT 894
| |.|..||||||| ..||||| |
BL01951___yoa 836 GCATTTTTATGAATAC-TTATCAA-------------------------T 859
BSNT_05141___ 895 ATAAACGAGAAAGCTGCACAATAA 918
.|||| |||| || |||
BL01951___yoa 860 TTAAA----AAAG-TG-----TAA 873
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