Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04830 and BL01932
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:02
# Commandline: needle
# -asequence dna-align/BSNT_04830___yurN.1.5803.seq
# -bsequence dna-align/BL01932___yurN.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04830___yurN-BL01932___yurN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04830___yurN-BL01932___yurN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04830___yurN
# 2: BL01932___yurN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1119
# Identity: 532/1119 (47.5%)
# Similarity: 532/1119 (47.5%)
# Gaps: 420/1119 (37.5%)
# Score: 958.0
#
#
#=======================================
BSNT_04830___ 1 ---------------TTGGTCAATCAGAA--------------------T 15
||| || |||| .
BL01932___yur 1 ATGAATAAAATTCCGTTG---AA--AGAAGCAAGGACGGCCTTTCCGCTG 45
BSNT_04830___ 16 AAAATAATCCC------------------------CTATTTG-------- 33
||||.|||||| |.||.||
BL01932___yur 46 AAAAAAATCCCTGCCAGTAAAATAGGGTGGCGGGACAATGTGCTGGCCTA 95
BSNT_04830___ 34 -----TTTTTGGTGCCCGCTCTCG----TTTTTT---TACTTTTCGTTTA 71
||||.||| |||..||.| ||||.| |..||.||| |.|
BL01932___yur 96 TACATTTTTAGGT--CCGGCCTTGCTGATTTTGTCAGTGTTTCTCG-TGA 142
BSNT_04830___ 72 TATCC--CGATTTTTGAGAATGTATTCCTCAGCCTGTTTCAGTGGAGCTC 119
| ||| |||||.|.|.| || ||.||..||.| ||.|||...| |.
BL01932___yur 143 T-TCCTTCGATTATGGCG---GT-TTACTACGCAT-TTACAGATTA--TT 184
BSNT_04830___ 120 ATTT------------TCTCCGGAAAAAACGTTTATCGGCTTAAAAAACT 157
|||| .||.||.|| ||||.||||.||..|.||||
BL01932___yur 185 ATTTGTTAACACCTGACCTGCGCAA-----GTTTGTCGGTTTTGACAACT 229
BSNT_04830___ 158 ATGTTGAATTATTTCATGATCCTGTCTTCT--ATCAG-----GCACTTAC 200
.|.|..||||.||..|.||.|||.|.|||| |..|| ||| ||
BL01932___yur 230 TTATCAAATTGTTCAAAGACCCTATTTTCTTGAAAAGTTTGAGCA---AC 276
BSNT_04830___ 201 CAAT---AA-----TGTGCTTTATGCAGTGATCTCAATTGTATGCCAGGT 242
..|| || |||.||| ||||| ||.||| .|||.|
BL01932___yur 277 ACATTGAAATTTGTTGTCCTT------GTGAT-TCCATT-----ACAGAT 314
BSNT_04830___ 243 ATTTGGCGGTTTGATTTTGGCGG----CGGTGCTTGAGGATAAGCTGGTC 288
||| |||.| ||| |||||.|
BL01932___yur 315 ------CGG---------GGCCGCTCTCGG-------------GCTGGCC 336
BSNT_04830___ 289 ----------AGAAAATGGTCGC----------CGTTTTT-----TCGTA 313
|.||||.| ||| ||||||| |||.|
BL01932___yur 337 CTTCTGTTGAATAAAAAG--CGCAAGGCCAATACGTTTTTCAAAGTCGCA 384
BSNT_04830___ 314 ----------CCGTTTTCTTTTTGCCGGTTGTCATCTCAATGACTGTGAT 353
||||..||.|.|.||..|||||||||||
BL01932___yur 385 TACTTTAGCCCCGTCGTCATGTCGCTTGTTGTCATCTC------------ 422
BSNT_04830___ 354 CGCGCTTTTGTTTGATTTTATTTAC--AATCCGGA-GACAGGGCTGTTGA 400
|| ||||| ||..|.||.||.| ||||||.| || |||..||.|.|
BL01932___yur 423 --CG-TTTTG--TGGCTGTACTTGCTGAATCCGAATGA-AGGAATGATAA 466
BSNT_04830___ 401 ATCA---GCTGCTTCAGGCCATCGGTCTTG-----ATCAGC------TGA 436
||.| .|||...||.| ||||| ||| | |||| |||
BL01932___yur 467 ATAACGTACTGACGCATG---TCGGT-TTGCCGCCA-CAGCCGTTTTTGA 511
BSNT_04830___ 437 CGAGGGCCTGGCTCGGGGATGACAGCACAGCTATGCTTT-CTGTCATTTT 485
| |.|.||| .|| ||| ||.|| |||| |..|..||||
BL01932___yur 512 C-AAGTCCT--------AAT--CAG----GCGAT-CTTTACAATTGTTTT 545
BSNT_04830___ 486 TGTGTCCCAG--TGGCAATCTGTCGGTTATATTGC-GATG-----TTGTA 527
.||.| ||| |||||....|.||| |||.| |||| ||.|.
BL01932___yur 546 CGTTT--CAGTCTGGCAGGGAGCCGG----ATTTCAGATGCTGATTTTTT 589
BSNT_04830___ 528 CATCGTGTCGATTCAAAA-AATACCGGATGAACTGTATGAAGCGGCCCGG 576
.|.||.|.| |.||||| |.|.||||| ||..|.||.||.||||| |
BL01932___yur 590 TAGCGGGCC--TGCAAAACATTCCCGGA-GATGTCTACGAGGCGGC---G 633
BSNT_04830___ 577 C--TTGACGGCGCGGGTA-----AAAT-TCAGCAGTTTTTTCATATTAC- 617
| ||| |..|||| |||| .||||.||||.||.|||||||
BL01932___yur 634 CAATTG-----GATGGTATGAATAAATGGCAGCGGTTTATTTATATTACA 678
BSNT_04830___ 618 -------TGTTCCCCAGACGAAAGAGATGTC---TTTTGT-TGCGGTGGT 656
|||| ||||..||.||| ||||.| | |..|
BL01932___yur 679 TTGCCTTTGTT--------GAAACCGACGTCGGTTTTTATCT----TTAT 716
BSNT_04830___ 657 CATGACGCTGACCGGGGCCTTTACGGTCTTTAATGAGCCGTACA------ 700
.|.||||||||.|.|.||.||||.|.||.| |||.||
BL01932___yur 717 TACGACGCTGATCAGTGCGTTTAAGCTCCT--------CGTGCAGCCAAT 758
BSNT_04830___ 701 --TTTTGA--CAGGCGGCGGGCCGGGAAACGC------GTCAGAAGTCTT 740
|..||| ||| ||.||.||||..||..| |.|||..||||
BL01932___yur 759 GGTCATGACCCAG--GGGGGACCGGTCAATTCAACGATGACAGTTGTCT- 805
BSNT_04830___ 741 GAGCACGTTTTTA--TATAAAAGCGCCTTTACAGA--GGATATGATGGGC 786
.||.|| |||.|||..|..|||||.|| || |||.|.|||
BL01932___yur 806 -------ATTATATTTATCAAACGGGATTTACCGATCGG--ATGGTCGGC 846
BSNT_04830___ 787 TACGC---CTCAGCGATTGCCACTGTCGT-------GTTAAT--CATT-- 822
||.|| .||| |||| |.||.|.|| |.|||| .|||
BL01932___yur 847 TATGCAAGTTCA---ATTG-CGCTCTTGTTTGGCACGATAATTGGATTGG 892
BSNT_04830___ 823 --ACGCTTGCATTATCGCTCATGCAAATGAAGTTCTTTAAAACCGG-AAA 869
|||||||| |||....||||| || .||
BL01932___yur 893 TGACGCTTGC------------GCAGCGCAAGTT----------GGTGAA 920
BSNT_04830___ 870 GGAGGAGTAA--------- 879
||||||..||
BL01932___yur 921 GGAGGATGAAGGCGGATGA 939
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