Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06073 and BL01925
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:04
# Commandline: needle
# -asequence dna-align/BSNT_06073___yxeC.1.5803.seq
# -bsequence dna-align/BL01925.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06073___yxeC-BL01925.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06073___yxeC-BL01925.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06073___yxeC
# 2: BL01925
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 726
# Identity: 263/726 (36.2%)
# Similarity: 263/726 (36.2%)
# Gaps: 387/726 (53.3%)
# Score: 498.0
#
#
#=======================================
BSNT_06073___ 1 -------ATGGGAATTACAAAAAGAG-GTGCCGCTTGGGAATG---GCTG 39
||||..||..|||.|||.| || |.|||| ||||
BL01925 1 ATGGCTAATGGATATACCAATAAGGGAGT--------GAAATGGGAGCTG 42
BSNT_06073___ 40 --------CATAGCTGGTGGATGCTGTTTATTTTCATGCCTTTTGCCATT 81
|||| |||.|.||.|||.|.||.|..|||||||.|
BL01925 43 TTTCAATCCATA-----TGGGTCCTATTTGTATTTACTCCTTTTGGC--- 84
BSNT_06073___ 82 ACCAGTTTTT--------TTGCCTTTTTATTTATT--------GGCATCA 115
||||| ||.|.|||||.|.|||| ||||
BL01925 85 -----TTTTTAAATTGGGTTTCTTTTTTCTATATTTTCGCTCGGGCA--- 126
BSNT_06073___ 116 AGGTTAGAAATAGAAAGTGGATCAT----GTACGGCATC-ATT----TAT 156
|.|.|.|.|||.|||.|.|| |.|.|| ||| ||| |||
BL01925 127 -----AAACAAAAAAAATGGTTAATTGCCGGATGG-ATCTATTTTGCTAT 170
BSNT_06073___ 157 TTTTTCATT---TTTGCGTT----TGG-----TTTTGTTTTGTCCGATCT 194
|||||.||| |.|.|.|| ||| .|||.|| |.||..
BL01925 171 TTTTTTATTCACTATTCTTTCTAATGGAACACCTTTATT-----CAATGC 215
BSNT_06073___ 195 GCCC---GGTGTTTTTATTGTGGTCCCGTTATGGGCGGTAACCATTATTC 241
|.|| |.|.||||.||..|.|.| ||||..||..|.|||.|||
BL01925 216 GGCCATGGTTCTTTTGATCATCGGC------TGGGGTGTCTCAATTGTTC 259
BSNT_06073___ 242 ATGGATTTAAAGTGCGCCCGCTGTATTTGATTCAGCTGGATGTC--TACA 289
|.|..||.||||||||.|||..||.|||.||||.|.|.|| ||| |.||
BL01925 260 ACGCTTTAAAAGTGCGGCCGGAGTTTTTAATTCGGTTAGA-GTCCATTCA 308
BSNT_06073___ 290 A--------------------AGATCATGTG------------------- 300
| ||||||..||
BL01925 309 ACAGTTGAAACGCGCTGAAATAGATCAGCTGCGTAAATCTCTGAAAAATG 358
BSNT_06073___ 301 --------GAGGCGCG----GGCTTTTGC---CGAGGCA----------- 324
|||.| || |||| | ||||.||
BL01925 359 AGTATCCAGAGAC-CGCCGCGGCT----CGAACGAGCCAAACCGATAAAC 403
BSNT_06073___ 325 ----------------AGA----AGTGAAGCCGAGAG-------CA---- 343
||| |.|.||| ||||.| ||
BL01925 404 AATCGGAACGGAAAATAGACATTAATCAAG-CGAGTGTGGAAGACATCGC 452
BSNT_06073___ 344 ---GATTTCATGCA-----------------CCGAAACAG---------- 363
||||.| ||| ||.|||.||
BL01925 453 TTCGATTCC--GCAGTTGGGAATTATCCTCGCCAAAAAAGCGGTCGCCAT 500
BSNT_06073___ 364 -------------------------TCTATTCAGGATATACATATTC-GC 387
|||||| ||| ||| ||| ||
BL01925 501 GCGTGAAGAAATCGGTGGCTTTTCATCTATT---GAT---CAT-TTCGGC 543
BSNT_06073___ 388 AAAGAACAGTAA-------------------------------------- 399
|||||||.|
BL01925 544 ---GAACAGTTAGGATTGAAGCCGCATGTGCTTTTGAAGGTAGAGCCGTA 590
BSNT_06073___ 399 -------------------------------------------------- 399
BL01925 591 TCTCTCATTCTCTAAACCAGTTGACCGAAGGGATAGAAAAGATGAGAATG 640
BSNT_06073___ 399 -------------------------- 399
BL01925 641 CTGAAGGAAGGGTTTTGGATATTTAA 666
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