Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03466 and BL01892

See Amino acid alignment / Visit BSNT_03466 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:27
# Commandline: needle
#    -asequence dna-align/BSNT_03466___ypuD.1.5803.seq
#    -bsequence dna-align/BL01892.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03466___ypuD-BL01892.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03466___ypuD-BL01892.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03466___ypuD
# 2: BL01892
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 363
# Identity:     245/363 (67.5%)
# Similarity:   245/363 (67.5%)
# Gaps:          36/363 ( 9.9%)
# Score: 767.0
# 
#
#=======================================

BSNT_03466___      1 ATGGGAAGAATAAAAACCAAGATTACCATTCTGTTAGTGCTTTTGCT--T     48
                     |||||.|.|||||||..||||.|.||..|||||.|.||  |||.|||  .
BL01892            1 ATGGGGAAAATAAAATTCAAGCTCACGGTTCTGCTCGT--TTTGGCTGCC     48

BSNT_03466___     49 TTACTTGC---AGGCGGTTA-TATGTACATAAATGATGTTGAGC-TGAAG     93
                     .||||.||   ||||..||| |||.||.|.||..||     ||| |..||
BL01892           49 GTACTGGCCGGAGGCTTTTATTATTTAAAAAACGGA-----AGCGTTCAG     93

BSNT_03466___     94 GATGTTCCGACAGCAATTGGACAAACCTTGTCCTCGGAAGAAGAGGAATA    143
                     |||||..|.||.||..|..|.||||||.|.||.||.||.|||.||.|.||
BL01892           94 GATGTCTCAACGGCGCTCAGCCAAACCGTCTCATCTGAGGAAAAGAACTA    143

BSNT_03466___    144 CACCATCCAGGAATATAAAGTGACGAAAATTGACGGCTCAGAGTATCATG    193
                     .|||||..|..|||||||..|.||.||||||||||||.|.||.||.||.|
BL01892          144 TACCATTTATCAATATAAGATCACCAAAATTGACGGCACTGAATACCACG    193

BSNT_03466___    194 GAGTAGCAGAAAACGGAACGAAAATCATCTTTAACG-GAAAAAAATTAAA    242
                     |.|||.||||.|||||||||||.|||||.||.||.| ||||||..|| ||
BL01892          194 GGGTATCAGATAACGGAACGAAGATCATTTTCAATGCGAAAAATCTT-AA    242

BSNT_03466___    243 TCAGGATTTATCTGATATAAAAGAAGGTGACAAGATTAAGGCATACTTCA    292
                     .||||||.|.||.||.||.||||||||.|||||..|.|||||.|||||| 
BL01892          243 CCAGGATCTGTCCGACATTAAAGAAGGAGACAAAGTAAAGGCCTACTTC-    291

BSNT_03466___    293 GCAAAT-CAAAGCGGATCGACGGATTAA---------TCAAGGTTGCAAA    332
                     .|.||| |.||..|.|||||||||||||         |||||||.|||  
BL01892          292 TCTAATGCCAACAGAATCGACGGATTAATAAAAGTCGTCAAGGTGGCA--    339

BSNT_03466___    333 AGTGAATGATTAA    345
                        ||||.|    
BL01892          340 ---GAATAA----    345


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