Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03460 and BL01888
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:27
# Commandline: needle
# -asequence dna-align/BSNT_03460___ribH.1.5803.seq
# -bsequence dna-align/BL01888___ribH.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03460___ribH-BL01888___ribH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03460___ribH-BL01888___ribH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03460___ribH
# 2: BL01888___ribH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 481
# Identity: 347/481 (72.1%)
# Similarity: 347/481 (72.1%)
# Gaps: 32/481 ( 6.7%)
# Score: 1225.5
#
#
#=======================================
BSNT_03460___ 1 ATGAATATCATACAAGGAAATTTAGTTGGTACAGGTCTTAAAATCGGAAT 50
|||||||..|||.||||..||.||.||||.||||.|.|.|||||.||.||
BL01888___rib 1 ATGAATAAAATAGAAGGTCATGTAATTGGAACAGATTTGAAAATTGGGAT 50
BSNT_03460___ 51 CGTAGTAGGAAGATTTAATGATTTTATTACGAGCAAGCTGCTGAGCGGAG 100
|||.||...|||.||.||.|||||||||||.|||||.||.||.|||||.|
BL01888___rib 51 CGTTGTGTCAAGGTTCAACGATTTTATTACAAGCAAACTTCTAAGCGGCG 100
BSNT_03460___ 101 CAGAAGATGCGCTGCTCAGACATGGCGTAGACACAA-----ATGACATTG 145
|||||||..|||||.|.||||||||.|| ||| ||||.||||
BL01888___rib 101 CAGAAGACACGCTGTTGAGACATGGGGT-----CAAAGCTGATGATATTG 145
BSNT_03460___ 146 ATGTGGCTTGGGTTCCAGGCGCATTTGAAATACCGTTTGCT----GCGAA 191
||||.||.||||||||.|||||.||.|||||.|| ||| ||.||
BL01888___rib 146 ATGTCGCCTGGGTTCCCGGCGCTTTCGAAATTCC----GCTCATCGCCAA 191
BSNT_03460___ 192 AAAAATGGCGGAAACAAAAAAATATGATGCTATTATCACATTGGGCACTG 241
|||||||||.|||||.||||||||.||.||..|.||.||..|||||||.|
BL01888___rib 192 AAAAATGGCTGAAACGAAAAAATACGACGCAGTGATTACGCTGGGCACGG 241
BSNT_03460___ 242 TCATCAGAGGCGCAACGACACATTACGATTATGTCTGCAATGAAGCTGCA 291
|.||||||||.||.||.|..||.||.||.|||||||||||||||||.||.
BL01888___rib 242 TTATCAGAGGAGCGACAAGCCACTATGACTATGTCTGCAATGAAGCGGCT 291
BSNT_03460___ 292 AAAGGCATCGC-GCAAGCAGCA----AACACTACTGGTGTACCTGTCATC 336
||.||.||.|| ||.||||||| |||| ||.||.||.||.|||
BL01888___rib 292 AAGGGGATTGCAGCGAGCAGCATGTCAACA-----GGCGTTCCGGTGATC 336
BSNT_03460___ 337 TTTG--GAATTGTAACAACTGAAAACATCGAACAGGCTATCGAGCGTGCC 384
||.| |.|||| ||.||.||.|..|||||.|||||..||||.||.|||
BL01888___rib 337 TTCGGCGTATTG--ACGACAGACACGATCGAGCAGGCGGTCGAACGCGCC 384
BSNT_03460___ 385 GGCACAAAAGCGGGCAATAAAGGTGTAGATTGTGCTGTTTCTGCCATTGA 434
||.||||||||.||.||||||||||.|||...|||.|...|.||.|||||
BL01888___rib 385 GGAACAAAAGCCGGAAATAAAGGTGCAGAAGCTGCCGCGGCAGCGATTGA 434
BSNT_03460___ 435 AATGGCAAATTTAAACCGCTCATTTGAATAA 465
||||||.||..|.|.|||.||..||.|||||
BL01888___rib 435 AATGGCGAACCTGACCCGGTCGCTTCAATAA 465
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