Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03456 and BL01886

See Amino acid alignment / Visit BSNT_03456 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:27
# Commandline: needle
#    -asequence dna-align/BSNT_03456___scpA.1.5803.seq
#    -bsequence dna-align/BL01886___scpA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03456___scpA-BL01886___scpA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03456___scpA-BL01886___scpA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03456___scpA
# 2: BL01886___scpA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 767
# Identity:     600/767 (78.2%)
# Similarity:   600/767 (78.2%)
# Gaps:          22/767 ( 2.9%)
# Score: 2314.0
# 
#
#=======================================

BSNT_03456___      1 ATGGAAGAATATCAAGTGAAAATTGATACGTTTG-AGGGCCCATTGGACC     49
                     |||   ||||||||.||||||||.||..|||||| ||||||| .||||.|
BL01886___scp      1 ATG---GAATATCAGGTGAAAATCGAGGCGTTTGAAGGGCCC-CTGGATC     46

BSNT_03456___     50 TGCTGCTTCATTTAATCAATCGTCTTGAAATTGACATATATGATATACCT     99
                     |||||||.||.||||||||.||.||||||||.|||||.|||||.||||||
BL01886___scp     47 TGCTGCTGCACTTAATCAACCGCCTTGAAATAGACATTTATGACATACCT     96

BSNT_03456___    100 GTGGCGAAGATCACTGAACAATATTTATTATATGTACATACGATGCGTGT    149
                     ||.||||||||.||.||.||.||||||||||||||.||.||||||||.|.
BL01886___scp     97 GTTGCGAAGATAACCGAGCAGTATTTATTATATGTGCACACGATGCGCGA    146

BSNT_03456___    150 GCTTGAGCTCGATATGGCCAGCGAGTATTTGGTTATGGCTGCCACGCTGC    199
                     .|||||||||||..|||||||||||||||||||.||||||||.||.||.|
BL01886___scp    147 ACTTGAGCTCGACGTGGCCAGCGAGTATTTGGTGATGGCTGCGACCCTTC    196

BSNT_03456___    200 TCAGCATTAAAAGCAGAATGCTGCTCCCGAAGCAAGAGGAGGAGCTTTTT    249
                     |||||||.||||||.|||||||.||.||.|||||.||.||.|||||.|||
BL01886___scp    197 TCAGCATCAAAAGCCGAATGCTTCTTCCAAAGCAGGAAGAAGAGCTGTTT    246

BSNT_03456___    250 GAAGATGAATTACT---TGAAGAAGAAGATCCGCGGGAGGAACTGATTGA    296
                     ||.||.||.||.||   .||.|||||.||||||.|.||.|||.|||||||
BL01886___scp    247 GACGAAGAGTTTCTCGAGGAGGAAGAGGATCCGAGAGAAGAATTGATTGA    296

BSNT_03456___    297 AAAGCTGATTGAGTATCGAAAATATAAAGATGCGGCGAAGGATTTAAAAG    346
                     |||..|.||.|||||..|||||||.|||..|||.|||.|..|||||||.|
BL01886___scp    297 AAAATTAATAGAGTACAGAAAATACAAAAGTGCCGCGCAAAATTTAAAGG    346

BSNT_03456___    347 AACGGGAAGAAGAAAGACAAAAATCGTTCACGAAACCGCCGAGTGATTTG    396
                     |.||.||.|||||..|.||||||.|.|||.|.||.||||||||.|||||.
BL01886___scp    347 AGCGCGAGGAAGAGCGGCAAAAAGCATTCGCAAAGCCGCCGAGCGATTTA    396

BSNT_03456___    397 AGTGAATATGCAAAAGAAGTAAAACAGTC--TGAGCAAAAGCTCTCTGTC    444
                     ||.||.||.||.||.|||.|.||||  ||  .|||||||||||.||.|||
BL01886___scp    397 AGCGACTACGCCAAGGAAATCAAAC--TCAGCGAGCAAAAGCTGTCCGTC    444

BSNT_03456___    445 ACGGTCTATGATATGATCGGAGCTTTTCAAAAAGTGCTGAAACGCAAAAA    494
                     ||.||.||.||.|||.||||.||.|||||||||||||||||.||||||||
BL01886___scp    445 ACCGTTTACGACATGCTCGGGGCGTTTCAAAAAGTGCTGAACCGCAAAAA    494

BSNT_03456___    495 AATAAACAGGCCGATGGAAACAACAATTACAAGACAGGACATACCAATCG    544
                     |||.|||.|||||...|||||||.||||.||||||||||.|||||.||.|
BL01886___scp    495 AATCAACCGGCCGTCTGAAACAAGAATTTCAAGACAGGAAATACCGATAG    544

BSNT_03456___    545 AAGCCAGAATGAACG-AAATCGTGCACAGCTTGAAATCTAGAG----GAA    589
                     |||...||||| ||| |||||||..||.|.||||||||    |    |.|
BL01886___scp    545 AAGAGCGAATG-ACGCAAATCGTCGACTGTTTGAAATC----GTCCCGCA    589

BSNT_03456___    590 CGAGAATCAACTTTATGGATCTGTTTCCATATGAGCAAAAAGAACATTTA    639
                     ..||.||..|.||||||||.|||||.||.|||||.||.|||||.|||.|.
BL01886___scp    590 AAAGGATGCATTTTATGGAACTGTTCCCGTATGAACAGAAAGAGCATCTC    639

BSNT_03456___    640 GTAGTGACCTTTCTAGCTGTTCTCGAGCTGATGAAAAATCAGCTGGTCCT    689
                     ||.|||||.|||.|.||..||.|.||||||||||||||.||||||.||.|
BL01886___scp    640 GTTGTGACGTTTTTGGCGATTTTGGAGCTGATGAAAAACCAGCTGATCAT    689

BSNT_03456___    690 CATTGAACAGGAGCACAATTTTTCAGATATTTACATTACGGGGAGTGAAT    739
                     ||||||||||||.|||||.|||||||||||||||||.||.|||||||||.
BL01886___scp    690 CATTGAACAGGAACACAACTTTTCAGATATTTACATAACAGGGAGTGAAG    739

BSNT_03456___    740 CCATTCATGGGGCTTGA    756
                     |.|||||||..||||||
BL01886___scp    740 CGATTCATGACGCTTGA    756


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03456 and BL01886

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
