Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_00917 and BL01870

See Amino acid alignment / Visit BSNT_00917 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:28
# Commandline: needle
#    -asequence dna-align/BSNT_00917___ydfA.1.5803.seq
#    -bsequence dna-align/BL01870___ydfA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00917___ydfA-BL01870___ydfA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00917___ydfA-BL01870___ydfA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00917___ydfA
# 2: BL01870___ydfA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1330
# Identity:     963/1330 (72.4%)
# Similarity:   963/1330 (72.4%)
# Gaps:          56/1330 ( 4.2%)
# Score: 3315.0
# 
#
#=======================================

BSNT_00917___      1 TTGACATCAATGATTTTGGCAGTATTCATCTTTTTATTAACTCTAGTATT     50
                     .||||..||  |..||.|.||.| ||.||.|||.|..|.||.||.....|
BL01870___ydf      1 ATGACGACA--GTCTTAGCCACT-TTGATTTTTCTGCTGACGCTCACGCT     47

BSNT_00917___     51 GGTCATATGGCAGCCGAAAAATTTATCTATAGGGTGGTCAGCCTGTGGAG    100
                     .||.||.|||||||||||||||.||||.||.||.|||||.|||||.||||
BL01870___ydf     48 CGTGATTTGGCAGCCGAAAAATCTATCCATCGGCTGGTCGGCCTGCGGAG     97

BSNT_00917___    101 GCGCAGTTTTAGCTCTAATAGCAGGTGTTGTCAATTTTCATGATGTGTTA    150
                     |.||.||..|.|||.||||.||.||.||.|||||||||||.|||||.|||
BL01870___ydf     98 GAGCGGTGCTGGCTTTAATTGCCGGAGTCGTCAATTTTCAGGATGTATTA    147

BSNT_00917___    151 -ACTGTGACAGGGATTGTTTGGAATGCGACCTTGGCTTTTGTGGCCATCA    199
                      || ||.||.||.||.||.|||||||||||.|||||.|||||.||.||||
BL01870___ydf    148 GAC-GTAACGGGAATCGTATGGAATGCGACTTTGGCATTTGTTGCGATCA    196

BSNT_00917___    200 TACTGATATCGTTAATTCTTGATAATATCGGTTTCTTTGAATGGGCAGCG    249
                     |..|.||.||..|.||.||||||.|.|||||.||.||.||.|||||.||.
BL01870___ydf    197 TCATTATCTCCCTGATCCTTGATGAAATCGGATTTTTCGAGTGGGCCGCC    246

BSNT_00917___    250 CTTCATATGGCTAAGGCTGCAAAAGGAAACGGTGTGCGGATGTTCGTTTA    299
                     ||.||.|||||.|||||.||.|||||||||||..|.||||||||.||.||
BL01870___ydf    247 CTGCACATGGCCAAGGCAGCTAAAGGAAACGGCATTCGGATGTTTGTCTA    296

BSNT_00917___    300 TGTATCTCTATTAGGAGCTATTGTCGCCGCGTTATTTGCAAATGACGGTG    349
                     |||..|.||..|.|||||..|.||.||||||.|.|||||.||||||||.|
BL01870___ydf    297 TGTCACCCTGCTGGGAGCCGTAGTAGCCGCGCTGTTTGCCAATGACGGAG    346

BSNT_00917___    350 CAGCTCTTATATTGACACCAATCGTATTAGCGATGGTCAGAGCATTACAT    399
                     |.|||.|.||.|||||.||.||.||..|.||.|||||..|.||.|||.||
BL01870___ydf    347 CTGCTTTAATTTTGACGCCGATTGTGCTTGCCATGGTACGCGCGTTAAAT    396

BSNT_00917___    400 TTTAATGAAAAATTAGTTTTTCCTTTTATCATTGCCAGCGGATTTATTGC    449
                     |||.|.|||||..|.||||||||||||||.||.||.|||||||||||.||
BL01870___ydf    397 TTTCAAGAAAAGCTCGTTTTTCCTTTTATTATCGCAAGCGGATTTATCGC    446

BSNT_00917___    450 GGATACCACTTCGCTTCCTTTAGTAGTGAGCAATTTGGTCAACATTGTTT    499
                     ||||||.||.|||||.||..|.||.||.|||||..|.|||||.|||||.|
BL01870___ydf    447 GGATACAACATCGCTGCCGCTTGTTGTCAGCAACCTTGTCAATATTGTCT    496

BSNT_00917___    500 CAGCGGACTATTTTC-ATATTACG--TTTATTGATTATGCATCCAGAATG    546
                     ||||.|||| ||||| |.||  ||  |||||.||.||||||.|.||||||
BL01870___ydf    497 CAGCAGACT-TTTTCAACAT--CGGATTTATCGAATATGCAACAAGAATG    543

BSNT_00917___    547 GTTGTCCCGTACTTGTTTTCGCTGCTGGCGAGCATCATTGTACTTTACCT    596
                     .||||.||..||.||||||||||..|.||.||||||||.||.||||   |
BL01870___ydf    544 ATTGTTCCAAACCTGTTTTCGCTTATTGCAAGCATCATCGTGCTTT---T    590

BSNT_00917___    597 TTTCTTT---AGAAAAAGCATACCAAAACGC-----TATGATCTGACTGA    638
                     |||.|||   |||||||||||.|     |||     |||||..||||..|
BL01870___ydf    591 TTTGTTTTTCAGAAAAAGCATTC-----CGCGGCATTATGACATGACAAA    635

BSNT_00917___    639 GGTTAAAAAACCTGTTGAAGCAATTAAAGATCA--AAACATGTTCAGACT    686
                     .||.|||.|.||.|..|||||.||||.||| ||  ||| ||.|||.|..|
BL01870___ydf    636 TGTAAAACAGCCAGCGGAAGCGATTAGAGA-CAGGAAA-ATATTCCGCTT    683

BSNT_00917___    687 GTCATGGTATATCTTAGGGCTGCTGTTAATTGGATATTTTGCAAGTGAAT    736
                     |||||||...||.||||...|.|||||....||.||.|||...||.||..
BL01870___ydf    684 GTCATGGCTCATATTAGCCGTTCTGTTGGCCGGTTACTTTATCAGCGAGC    733

BSNT_00917___    737 TTTTTTCTATCCCTGT----ATCAGTGGTAGCGGGCAGCATTGCGATCAT    782
                     |.||.||.||||||||    ||||    |.||||||...||.||..||||
BL01870___ydf    734 TGTTCTCGATCCCTGTCTCGATCA----TCGCGGGCGTGATCGCCGTCAT    779

BSNT_00917___    783 TTTCTTAATCGCTGCGCAAAAGAGTCCGGCCGTCCATACAAAGAAAGTGG    832
                     |||||||||..|.|||.||||.||.||.||.||.||.||.|||||||||.
BL01870___ydf    780 TTTCTTAATTACAGCGAAAAACAGCCCCGCGGTGCAAACGAAGAAAGTGC    829

BSNT_00917___    833 TGAAAGAGGCGCCATGGGCTATCGTATTCTTTTCAATTGGCATGTACGTT    882
                     ||||.|..|||||.|||||.|||||.|||||.|||||.||.|||||.||.
BL01870___ydf    830 TGAAGGGAGCGCCTTGGGCGATCGTTTTCTTCTCAATCGGGATGTATGTC    879

BSNT_00917___    883 GTTGTGTATGGTGTCCGAAATGCCGGATTAACGGATGTCCTTTCAGATGT    932
                     ||.||.||.|||.|..||||.|||||.|||||.|||||.||.|||.|.||
BL01870___ydf    880 GTGGTATACGGTTTGAGAAACGCCGGCTTAACAGATGTTCTCTCACAGGT    929

BSNT_00917___    933 GATTCAAGCCG-CAGCTGATCAAGGATTGTTTGCTGGGACAATTGGAATG    981
                     .||.||..||| |||| ||||||||..|||||||.||.|||||.||||||
BL01870___ydf    930 CATCCAGACCGTCAGC-GATCAAGGGCTGTTTGCCGGAACAATGGGAATG    978

BSNT_00917___    982 GGCTTTATTGCGGCGATTCTTTCTTCCATT-ATGAATAACTTGCCGACTG   1030
                     ||||||||.||.||.||.||.|||| |||| |||||.||..|||||||.|
BL01870___ydf    979 GGCTTTATCGCAGCCATCCTGTCTT-CATTAATGAACAATATGCCGACGG   1027

BSNT_00917___   1031 TTATGATTGACGCATTGGCTATTGCCGG--TACAGACACACATGGGATGA   1078
                     |.||||||||.||..|.||.|||  |.|  |||.||.|||||.|||||..
BL01870___ydf   1028 TGATGATTGATGCGCTTGCGATT--CAGAATACCGATACACACGGGATTC   1075

BSNT_00917___   1079 TGAGAGAAGCGCTTATTTATGCAAATGTGATCGGTTCAGATTTAGGGCCT   1128
                     |.|||||||||||.|||||.||.|||||.|||||.||.|||.|.||.||.
BL01870___ydf   1076 TCAGAGAAGCGCTGATTTACGCCAATGTCATCGGCTCTGATCTCGGTCCG   1125

BSNT_00917___   1129 AAAATAACACCGATTGGTTCCTTGGCGACATTATTATGGCTTCATGTTCT   1178
                     |||||.||.|||||.||.|||.|||||||..|.||.||||||||.||.||
BL01870___ydf   1126 AAAATCACGCCGATCGGCTCCCTGGCGACGCTCTTGTGGCTTCACGTCCT   1175

BSNT_00917___   1179 TTCGCACAAAGGTATGAAGATTTCCTGGGGCACGTATTTTAAAACAGGAA   1228
                     |||.|..|||||..|.||||||||.|||||.||.||||||||||||||..
BL01870___ydf   1176 TTCACTGAAAGGCGTAAAGATTTCTTGGGGAACCTATTTTAAAACAGGTG   1225

BSNT_00917___   1229 TTATCCTCACGATACCCACTTTATTGATCACACTTGTCGGCCTGTATATT   1278
                     |.||..|.||.||.||.||..|.||.|||||.||||.|||.||.|||.|.
BL01870___ydf   1226 TCATTTTGACCATTCCAACCCTGTTCATCACGCTTGCCGGACTTTATGTG   1275

BSNT_00917___   1279 TGGCTGCTGATAATCCATTCTTGTTTCTAA   1308
                     |||||||||||.||||||         |||
BL01870___ydf   1276 TGGCTGCTGATCATCCAT---------TAA   1296


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.