Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00917 and BL01870
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:28
# Commandline: needle
# -asequence dna-align/BSNT_00917___ydfA.1.5803.seq
# -bsequence dna-align/BL01870___ydfA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00917___ydfA-BL01870___ydfA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00917___ydfA-BL01870___ydfA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00917___ydfA
# 2: BL01870___ydfA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1330
# Identity: 963/1330 (72.4%)
# Similarity: 963/1330 (72.4%)
# Gaps: 56/1330 ( 4.2%)
# Score: 3315.0
#
#
#=======================================
BSNT_00917___ 1 TTGACATCAATGATTTTGGCAGTATTCATCTTTTTATTAACTCTAGTATT 50
.||||..|| |..||.|.||.| ||.||.|||.|..|.||.||.....|
BL01870___ydf 1 ATGACGACA--GTCTTAGCCACT-TTGATTTTTCTGCTGACGCTCACGCT 47
BSNT_00917___ 51 GGTCATATGGCAGCCGAAAAATTTATCTATAGGGTGGTCAGCCTGTGGAG 100
.||.||.|||||||||||||||.||||.||.||.|||||.|||||.||||
BL01870___ydf 48 CGTGATTTGGCAGCCGAAAAATCTATCCATCGGCTGGTCGGCCTGCGGAG 97
BSNT_00917___ 101 GCGCAGTTTTAGCTCTAATAGCAGGTGTTGTCAATTTTCATGATGTGTTA 150
|.||.||..|.|||.||||.||.||.||.|||||||||||.|||||.|||
BL01870___ydf 98 GAGCGGTGCTGGCTTTAATTGCCGGAGTCGTCAATTTTCAGGATGTATTA 147
BSNT_00917___ 151 -ACTGTGACAGGGATTGTTTGGAATGCGACCTTGGCTTTTGTGGCCATCA 199
|| ||.||.||.||.||.|||||||||||.|||||.|||||.||.||||
BL01870___ydf 148 GAC-GTAACGGGAATCGTATGGAATGCGACTTTGGCATTTGTTGCGATCA 196
BSNT_00917___ 200 TACTGATATCGTTAATTCTTGATAATATCGGTTTCTTTGAATGGGCAGCG 249
|..|.||.||..|.||.||||||.|.|||||.||.||.||.|||||.||.
BL01870___ydf 197 TCATTATCTCCCTGATCCTTGATGAAATCGGATTTTTCGAGTGGGCCGCC 246
BSNT_00917___ 250 CTTCATATGGCTAAGGCTGCAAAAGGAAACGGTGTGCGGATGTTCGTTTA 299
||.||.|||||.|||||.||.|||||||||||..|.||||||||.||.||
BL01870___ydf 247 CTGCACATGGCCAAGGCAGCTAAAGGAAACGGCATTCGGATGTTTGTCTA 296
BSNT_00917___ 300 TGTATCTCTATTAGGAGCTATTGTCGCCGCGTTATTTGCAAATGACGGTG 349
|||..|.||..|.|||||..|.||.||||||.|.|||||.||||||||.|
BL01870___ydf 297 TGTCACCCTGCTGGGAGCCGTAGTAGCCGCGCTGTTTGCCAATGACGGAG 346
BSNT_00917___ 350 CAGCTCTTATATTGACACCAATCGTATTAGCGATGGTCAGAGCATTACAT 399
|.|||.|.||.|||||.||.||.||..|.||.|||||..|.||.|||.||
BL01870___ydf 347 CTGCTTTAATTTTGACGCCGATTGTGCTTGCCATGGTACGCGCGTTAAAT 396
BSNT_00917___ 400 TTTAATGAAAAATTAGTTTTTCCTTTTATCATTGCCAGCGGATTTATTGC 449
|||.|.|||||..|.||||||||||||||.||.||.|||||||||||.||
BL01870___ydf 397 TTTCAAGAAAAGCTCGTTTTTCCTTTTATTATCGCAAGCGGATTTATCGC 446
BSNT_00917___ 450 GGATACCACTTCGCTTCCTTTAGTAGTGAGCAATTTGGTCAACATTGTTT 499
||||||.||.|||||.||..|.||.||.|||||..|.|||||.|||||.|
BL01870___ydf 447 GGATACAACATCGCTGCCGCTTGTTGTCAGCAACCTTGTCAATATTGTCT 496
BSNT_00917___ 500 CAGCGGACTATTTTC-ATATTACG--TTTATTGATTATGCATCCAGAATG 546
||||.|||| ||||| |.|| || |||||.||.||||||.|.||||||
BL01870___ydf 497 CAGCAGACT-TTTTCAACAT--CGGATTTATCGAATATGCAACAAGAATG 543
BSNT_00917___ 547 GTTGTCCCGTACTTGTTTTCGCTGCTGGCGAGCATCATTGTACTTTACCT 596
.||||.||..||.||||||||||..|.||.||||||||.||.|||| |
BL01870___ydf 544 ATTGTTCCAAACCTGTTTTCGCTTATTGCAAGCATCATCGTGCTTT---T 590
BSNT_00917___ 597 TTTCTTT---AGAAAAAGCATACCAAAACGC-----TATGATCTGACTGA 638
|||.||| |||||||||||.| ||| |||||..||||..|
BL01870___ydf 591 TTTGTTTTTCAGAAAAAGCATTC-----CGCGGCATTATGACATGACAAA 635
BSNT_00917___ 639 GGTTAAAAAACCTGTTGAAGCAATTAAAGATCA--AAACATGTTCAGACT 686
.||.|||.|.||.|..|||||.||||.||| || ||| ||.|||.|..|
BL01870___ydf 636 TGTAAAACAGCCAGCGGAAGCGATTAGAGA-CAGGAAA-ATATTCCGCTT 683
BSNT_00917___ 687 GTCATGGTATATCTTAGGGCTGCTGTTAATTGGATATTTTGCAAGTGAAT 736
|||||||...||.||||...|.|||||....||.||.|||...||.||..
BL01870___ydf 684 GTCATGGCTCATATTAGCCGTTCTGTTGGCCGGTTACTTTATCAGCGAGC 733
BSNT_00917___ 737 TTTTTTCTATCCCTGT----ATCAGTGGTAGCGGGCAGCATTGCGATCAT 782
|.||.||.|||||||| |||| |.||||||...||.||..||||
BL01870___ydf 734 TGTTCTCGATCCCTGTCTCGATCA----TCGCGGGCGTGATCGCCGTCAT 779
BSNT_00917___ 783 TTTCTTAATCGCTGCGCAAAAGAGTCCGGCCGTCCATACAAAGAAAGTGG 832
|||||||||..|.|||.||||.||.||.||.||.||.||.|||||||||.
BL01870___ydf 780 TTTCTTAATTACAGCGAAAAACAGCCCCGCGGTGCAAACGAAGAAAGTGC 829
BSNT_00917___ 833 TGAAAGAGGCGCCATGGGCTATCGTATTCTTTTCAATTGGCATGTACGTT 882
||||.|..|||||.|||||.|||||.|||||.|||||.||.|||||.||.
BL01870___ydf 830 TGAAGGGAGCGCCTTGGGCGATCGTTTTCTTCTCAATCGGGATGTATGTC 879
BSNT_00917___ 883 GTTGTGTATGGTGTCCGAAATGCCGGATTAACGGATGTCCTTTCAGATGT 932
||.||.||.|||.|..||||.|||||.|||||.|||||.||.|||.|.||
BL01870___ydf 880 GTGGTATACGGTTTGAGAAACGCCGGCTTAACAGATGTTCTCTCACAGGT 929
BSNT_00917___ 933 GATTCAAGCCG-CAGCTGATCAAGGATTGTTTGCTGGGACAATTGGAATG 981
.||.||..||| |||| ||||||||..|||||||.||.|||||.||||||
BL01870___ydf 930 CATCCAGACCGTCAGC-GATCAAGGGCTGTTTGCCGGAACAATGGGAATG 978
BSNT_00917___ 982 GGCTTTATTGCGGCGATTCTTTCTTCCATT-ATGAATAACTTGCCGACTG 1030
||||||||.||.||.||.||.|||| |||| |||||.||..|||||||.|
BL01870___ydf 979 GGCTTTATCGCAGCCATCCTGTCTT-CATTAATGAACAATATGCCGACGG 1027
BSNT_00917___ 1031 TTATGATTGACGCATTGGCTATTGCCGG--TACAGACACACATGGGATGA 1078
|.||||||||.||..|.||.||| |.| |||.||.|||||.|||||..
BL01870___ydf 1028 TGATGATTGATGCGCTTGCGATT--CAGAATACCGATACACACGGGATTC 1075
BSNT_00917___ 1079 TGAGAGAAGCGCTTATTTATGCAAATGTGATCGGTTCAGATTTAGGGCCT 1128
|.|||||||||||.|||||.||.|||||.|||||.||.|||.|.||.||.
BL01870___ydf 1076 TCAGAGAAGCGCTGATTTACGCCAATGTCATCGGCTCTGATCTCGGTCCG 1125
BSNT_00917___ 1129 AAAATAACACCGATTGGTTCCTTGGCGACATTATTATGGCTTCATGTTCT 1178
|||||.||.|||||.||.|||.|||||||..|.||.||||||||.||.||
BL01870___ydf 1126 AAAATCACGCCGATCGGCTCCCTGGCGACGCTCTTGTGGCTTCACGTCCT 1175
BSNT_00917___ 1179 TTCGCACAAAGGTATGAAGATTTCCTGGGGCACGTATTTTAAAACAGGAA 1228
|||.|..|||||..|.||||||||.|||||.||.||||||||||||||..
BL01870___ydf 1176 TTCACTGAAAGGCGTAAAGATTTCTTGGGGAACCTATTTTAAAACAGGTG 1225
BSNT_00917___ 1229 TTATCCTCACGATACCCACTTTATTGATCACACTTGTCGGCCTGTATATT 1278
|.||..|.||.||.||.||..|.||.|||||.||||.|||.||.|||.|.
BL01870___ydf 1226 TCATTTTGACCATTCCAACCCTGTTCATCACGCTTGCCGGACTTTATGTG 1275
BSNT_00917___ 1279 TGGCTGCTGATAATCCATTCTTGTTTCTAA 1308
|||||||||||.|||||| |||
BL01870___ydf 1276 TGGCTGCTGATCATCCAT---------TAA 1296
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