Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03024 and BL01866
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:43
# Commandline: needle
# -asequence dna-align/BSNT_03024___yngK.1.5803.seq
# -bsequence dna-align/BL01866___yngK.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03024___yngK-BL01866___yngK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03024___yngK-BL01866___yngK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03024___yngK
# 2: BL01866___yngK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1570
# Identity: 888/1570 (56.6%)
# Similarity: 888/1570 (56.6%)
# Gaps: 419/1570 (26.7%)
# Score: 3106.5
#
#
#=======================================
BSNT_03024___ 1 ATGAAGGTTTGCCAAAAGTCGATTGTCCGTTTCCTTGTCAGCTTGATCAT 50
BL01866___yng 0 -------------------------------------------------- 0
BSNT_03024___ 51 CGGAACGTTTGTCATTTCCGTTCCGTTTATG---GCCAA-TGCGCAGTCT 96
||| |..|| .||||||.||
BL01866___yng 1 ----------------------------ATGAAAGAAAAGAGCGCAGGCT 22
BSNT_03024___ 97 G----AC-AGGGAGCTGAGAGCCGTATGGATTGCTTCCGTATTAAATATT 141
| || |..||..|..|.||.||.|||||.||..||||...|||||||
BL01866___yng 23 GCGAAACTAAAGAATTCCGGGCAGTGTGGATCGCCACCGTCACAAATATT 72
BSNT_03024___ 142 GATTGGCCGTCGAAAAAAGGGTTATCTG----TGAAAGAGCAAAAACAGG 187
||.|||||.||.|||||||| .||| |..|||||||||||..||
BL01866___yng 73 GACTGGCCTTCAAAAAAAGG----ACTGACAATCGAAGAGCAAAAAACGG 118
BSNT_03024___ 188 AGTATATCAAACTGCTGGACGATGTGCAAAAAATGGGAATGAATGCCGTT 237
|||||.|.||.||..||||.||||||..|..||||||.|||||.||.||.
BL01866___yng 119 AGTATGTGAAGCTTTTGGATGATGTGACAGCAATGGGGATGAACGCGGTC 168
BSNT_03024___ 238 ATCGTTCAGATTAAACCGACGGCTGATGCCTTTTATCCGTCAGCTTACGG 287
.|||||||.|||||.|||.||||.|||||.||||||||.||.||.|||||
BL01866___yng 169 GTCGTTCAAATTAAGCCGGCGGCGGATGCTTTTTATCCTTCCGCATACGG 218
BSNT_03024___ 288 GCCTTGGTCGGAATACTTAACCGGTGTCCAAGGGAAGGACCCGGGCTATG 337
|||.|||||||||||||||||.||..|.|||||.||.|||||.||.||.|
BL01866___yng 219 GCCGTGGTCGGAATACTTAACAGGGATTCAAGGAAAAGACCCTGGATACG 268
BSNT_03024___ 338 ATCCTCTTGCATTTATGATTGAAGAAACCCATAAAC----GAAATTTGGA 383
||||.||.||||||.||.|.|||||||||| || ||||..|.||
BL01866___yng 269 ATCCGCTGGCATTTTTGCTCGAAGAAACCC----ACCGGAGAAAGCTTGA 314
BSNT_03024___ 384 ATTTCATGCGTGGTTTAACCCTTACCGTATTACAATGAATCATACAGATC 433
|||||||||.|||||.||||||||.||.||.||.|||||||||||.|||.
BL01866___yng 315 ATTTCATGCATGGTTCAACCCTTATCGGATCACGATGAATCATACCGATT 364
BSNT_03024___ 434 TTAATAAATTGTCTGAGAGTCACCCGGCAAGAAAACATCCAGATTGGGTT 483
|.||.|...||||..||..|||||||||.||||..||.||.||.|||||.
BL01866___yng 365 TGAACAGGCTGTCACAGGATCACCCGGCCAGAACGCACCCCGACTGGGTC 414
BSNT_03024___ 484 GCCGCCTATGGAAACCAGCTGTATTATCATCCAGGCATTCCAGA-AACGA 532
|..|||||.||.|..|||||||||||..||||.|||||.||.|| ..|.|
BL01866___yng 415 GTTGCCTACGGCAGACAGCTGTATTACAATCCCGGCATCCCTGAGGCCCA 464
BSNT_03024___ 533 GAGATTTTATCGTCAAAGGCATTGAAGAAGTCGTAAAACATTATGATATC 582
| ||.||.||.|||.|||||||.|..||||||||.||..||||.....||
BL01866___yng 465 G-GAATTCATTGTCCAAGGCATAGCGGAAGTCGTCAAGAATTACCCGGTC 513
BSNT_03024___ 583 GATGCTGTTCATATGGATGATTATTTTTACCCTTATAAAATAGCAGGACA 632
||.||.||||||||||||||.||||||||.||.||||||||.||.|||..
BL01866___yng 514 GACGCCGTTCATATGGATGACTATTTTTATCCGTATAAAATTGCGGGAGT 563
BSNT_03024___ 633 GGAATTTCCTGA-TCAAGCACAGTATGAACAATACGGAAAAGGCGCTTTT 681
.||||||||.|| |..|||||| |||||||||||.|||||||.|..||||
BL01866___yng 564 CGAATTTCCCGACTTGAGCACA-TATGAACAATATGGAAAAGACCGTTTT 612
BSNT_03024___ 682 TCTAATATCGATGACTGGCGGCGGGACAATGTGAACCAGCTTGTCAAACA 731
||.|||||.||.||.|||||..|||||||.||.|||||||||||||||||
BL01866___yng 613 TCAAATATTGAAGATTGGCGAAGGGACAACGTCAACCAGCTTGTCAAACA 662
BSNT_03024___ 732 AATCAACCAAACAATTAAAGCTG---AAAAA-------CCGTATGTCAAA 771
|||||| |.|.||.| ||||| || |..||||||
BL01866___yng 663 AATCAA---------TGATGCCGTCAAAAAAGAGAGGGCC-TCAGTCAAA 702
BSNT_03024___ 772 TTCGGCATCAGTCCCTTTGGAGTATGGAGAAACGCCGCAGATGACCCGAC 821
||.||.|||||.||||||||.||||||.||||....||||||||.|||||
BL01866___yng 703 TTTGGAATCAGCCCCTTTGGTGTATGGCGAAATATAGCAGATGATCCGAC 752
BSNT_03024___ 822 CGGATCGAATACAAAAGCAGGCGTCAGAAATTATGATGATCTATATGCAG 871
.||||||||||||...||.||..|.|.|||.|||||.||.||.||.||.|
BL01866___yng 753 GGGATCGAATACAGCCGCCGGAATGACAAACTATGACGACCTTTACGCTG 802
BSNT_03024___ 872 ACACAAGACATTGGATCCAAGAAGGCGACATCGATTATATTGCTCCGCAA 921
||||.||..|.||||||..|.|.||..||||||||||.||.||.||||||
BL01866___yng 803 ACACGAGGGAATGGATCAGACAGGGATACATCGATTACATCGCCCCGCAA 852
BSNT_03024___ 922 ATTTATTGGAGTATCGGCTTTAACGCAGCGGCTTACGACGTGCTGGCTGA 971
||.||.|||||.|||||||||..|.||||..|.||||||.|..|.|..||
BL01866___yng 853 ATCTACTGGAGCATCGGCTTTGCCCCAGCTTCCTACGACATCTTAGTGGA 902
BSNT_03024___ 972 TTGGTGGAGCAATGAAGTCAAAAATAGGCCTGTTCACTTATATATTGGCC 1021
.|||||||..||||||||||...||.|.||.|||||.|||||.|||||.|
BL01866___yng 903 CTGGTGGAAAAATGAAGTCAGCCATCGCCCCGTTCATTTATACATTGGAC 952
BSNT_03024___ 1022 AGGCAGCATATAAAATCAATAACAATTTTGAT-CCGCCTTGGTCCGACCC 1070
|.|||||.||||||||||||.|.||.|..||| ||||| |||||.|||||
BL01866___yng 953 AAGCAGCCTATAAAATCAATCAAAACTCAGATCCCGCC-TGGTCAGACCC 1001
BSNT_03024___ 1071 TGAGGAATATGTGCGGCAAATCACTTTGAACCGCCAGCTTGAACTGGTGA 1120
|||.||||||..||||||.|||.|.||.|||||| ||.|.||.| ||||
BL01866___yng 1002 TGAAGAATATCCGCGGCAGATCGCATTAAACCGC--GCCTCAAAT-GTGA 1048
BSNT_03024___ 1121 AAGGAAGCATGCATTTCAGCCTCAAGGACCTCAACAAAAATCCGCTTGGC 1170
..||||||||.|||||||||||.||.||..|.|||...||||||||.|||
BL01866___yng 1049 TGGGAAGCATCCATTTCAGCCTGAAAGATTTAAACCGGAATCCGCTCGGC 1098
BSNT_03024___ 1171 ATCAAAGACAGGCTTATCGCCGATCTT-TACAGCAAGCCGGCA-CTGGTT 1218
||.||||||||.||.||| |.|..||| ||||..||.|||||| || |||
BL01866___yng 1099 ATTAAAGACAGACTGATC-CAGGACTTGTACAAAAAACCGGCAGCT-GTT 1146
BSNT_03024___ 1219 CCGCAAATGCCTTGGCTTGACAATACCGCCCCAAA-----AAAACCGAAG 1263
||..|.|||||||||||||.|| .|..||| |||||.||
BL01866___yng 1147 CCCGATATGCCTTGGCTTGGCA------GCGTAAACAGTGAAAACTGA-- 1188
BSNT_03024___ 1264 CTTACGAAAGTCACCGAAGACAAAAACGGCAATCTTCTGCAGATTAAAGA 1313
BL01866___yng 1188 -------------------------------------------------- 1188
BSNT_03024___ 1314 TCACCCATCAAATCAAAAAACGAAAGAAACAGCCTATTATGCGATATACA 1363
BL01866___yng 1188 -------------------------------------------------- 1188
BSNT_03024___ 1364 GAGCCGAAGGGAAAAAGCAGAACACATTGCTGGCAACGCAAAGAAAAACA 1413
BL01866___yng 1188 -------------------------------------------------- 1188
BSNT_03024___ 1414 CATGAGCAGCAAACCTTCTTAGATAACACGGCAGATCCTAACAAGAAATA 1463
BL01866___yng 1188 -------------------------------------------------- 1188
BSNT_03024___ 1464 TACGTATTATGTCACTTCAGCAGACCGGCTTCATAACGAAAGCAAGGCTT 1513
BL01866___yng 1188 -------------------------------------------------- 1188
BSNT_03024___ 1514 CCAAACGAACAACAAAATAA 1533
BL01866___yng 1188 -------------------- 1188
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