Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00684 and BL01857
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:19
# Commandline: needle
# -asequence dna-align/BSNT_00684___gabR.1.5803.seq
# -bsequence dna-align/BL01857___gabR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00684___gabR-BL01857___gabR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00684___gabR-BL01857___gabR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00684___gabR
# 2: BL01857___gabR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1568
# Identity: 962/1568 (61.4%)
# Similarity: 962/1568 (61.4%)
# Gaps: 265/1568 (16.9%)
# Score: 2725.0
#
#
#=======================================
BSNT_00684___ 1 ATGGATATCACAATTACACTCGAT----CGTTCAGAGCGAGCCGATTATA 46
||| |||||||| || |||| ||.||..||.|.||.||.||||
BL01857___gab 1 ATG---ATCACAAT---AC-CGATTGACCGCTCCAAGGGCGCGGAATATA 43
BSNT_00684___ 47 TCTATCAGCAAATTTATCAAAAGCTGAAAAAAGAAATCCTCAGCCGCAAT 96
|.|||||.|||||.||||||..|.|.|||.|||||||..||||||||||.
BL01857___gab 44 TTTATCACCAAATCTATCAACGGATTAAAGAAGAAATTTTCAGCCGCAAC 93
BSNT_00684___ 97 CTGCTGCCGCACTCG-----AAGGTTCCCTCCAAGCGGGAGCTGGCTGAA 141
||..||||| | |||.|.||.||||||||.|||||.||.|||
BL01857___gab 94 CTTTTGCCG-----GGGAAAAAGCTCCCATCCAAGCGAGAGCTCGCCGAA 138
BSNT_00684___ 142 A-ATCTCAAGGTCAGCGTAAATTCAGTGAATTCAGCCTATCAGCAGCTGC 190
| || |.||.||||||.|.|||||.||.||..|.|||||.||||||||.|
BL01857___gab 139 ACAT-TGAACGTCAGCATCAATTCGGTCAACGCCGCCTACCAGCAGCTTC 187
BSNT_00684___ 191 TGGCTGAAGGGTA--TTTGTACGCCATTGAACGAAAGGGTTTCTTCGTGG 238
||||.|||||.|| |||.|.||| .||||.||||.||.||.||.||.|
BL01857___gab 188 TGGCAGAAGGTTATCTTTATTCGC--GTGAAAGAAAAGGCTTTTTTGTAG 235
BSNT_00684___ 239 AGGAACTAGACATGTTTTCCGCCGAGGAG-CACCC---TCCATTTGCACT 284
||.|..|.||.|.|||...|||| ||..| ||||| |||..||..|.|
BL01857___gab 236 AGCAGATCGAAACGTTCCACGCC-AGCCGTCACCCCGGTCCCCTTCAATT 284
BSNT_00684___ 285 G---------CCGGATGATCTAAAAGAGATTCACATCGACCAGAGCGATT 325
| |.||.|| |||||..|.|.|.|.| ||| ||..|
BL01857___gab 285 GGAAAAAGAACTGGTTG------AAGAGCCTGAAAGCAA--AGA-CGGCT 325
BSNT_00684___ 326 GGATATCGTTTTCACACATGAGTTCCGATACAGACCATTTTCCGATCAAA 375
||||.||||||||.||.|||||...||||||.|..|||||||||.|.|||
BL01857___gab 326 GGATCTCGTTTTCCCATATGAGCGTCGATACGGCGCATTTTCCGTTTAAA 375
BSNT_00684___ 376 AGCTGGTTCCGCTGCGAGCAAAAAGCGGCCTCCCGCTCATACCGCAGG-- 423
|..|||.|.||||||||.||.|||||||..|| .||| ||.|
BL01857___gab 376 ACATGGCTTCGCTGCGAACAGAAAGCGGTTTC---TTCA-----CATGTT 417
BSNT_00684___ 424 ------CTCGGCGATATGTCACATCCGCAAGGGATATATGAAGTGAGAGC 467
|||||.||.|||.|.||.||||||||..|.||.||||||
BL01857___gab 418 GACGAACTCGGAGAAATGACGCACCCGCAAGGCGTCTACGAAGTG----- 462
BSNT_00684___ 468 GGCCATTACG-----AGGCTCATT-TCCC--TGACGAGGGGTGTAAAATG 509
.|||| .||| |.||| || ||.| |.|||||.||.||.|||||
BL01857___gab 463 CGCCA-AACGATCGCACGCT--TTATCGCTTTAACGAGAGGCGTCAAATG 509
BSNT_00684___ 510 CAGGCCGGAACAAA---TGATCATAGGGGCAGGCACACAGGTGCT----- 551
....||.||||||| |||||| |.|||||.||.|| ||.||
BL01857___gab 510 TCTCCCCGAACAAATCGTGATCA---GCGCAGGGACGCA-GTCCTTAATT 555
BSNT_00684___ 552 --CATGCAGCTGTTGACTGAGCTTTTACCCAAGGAAGCCGTGTATGCGAT 599
||.||..|.| ||.|||.|.|||.....||||||.||||||||
BL01857___gab 556 CACACGCTCCAG------GACCTTCTCCCCGCCTCAGCCGTCTATGCGAT 599
BSNT_00684___ 600 GGAGGAGCCTGGCTACAGGCGCATGTATCAGCTTTTGAAGAATGCCGGAA 649
|||||||||.||.|||||.|||||.||||..||..||||.||||..||||
BL01857___gab 600 GGAGGAGCCGGGATACAGCCGCATTTATCGACTGCTGAAAAATGAAGGAA 649
BSNT_00684___ 650 AACAAGTAAAGACGA-TCATGCTGGATGAAAAAGGCATGTCGAT-TGCTG 697
||.||||....|||| ||| |||.||..|.|||||.|||..||| .|| |
BL01857___gab 650 AAGAAGTCGCCACGATTCA-GCTCGACCATAAAGGAATGCGGATCAGC-G 697
BSNT_00684___ 698 A-AATCACCAGACAGCAGCCAGATGTGCTGGTGACCACCCCGTCGCATCA 746
| |.||||| |.|.|.|.||.||.||..|..|...|||.||.||.||.||
BL01857___gab 698 AGATTCACC-GTCTGAATCCGGACGTTTTATTTGTCACGCCTTCACACCA 746
BSNT_00684___ 747 GTTTCCGTCCGGAACGATTATGCCTGTATCCAGAAGAATTCAGCTGCTGA 796
||||||..|.||||..||||||||.|||||.||.||.||||||||..|.|
BL01857___gab 747 GTTTCCAACAGGAATCATTATGCCGGTATCGAGGAGGATTCAGCTTTTAA 796
BSNT_00684___ 797 ACTGGGCAGCCGAGGAGCCGCGCCGATATATCATTGAGGACGATTATGAT 846
||||||...||||.|.|.|...|||.|||||..|.||.|||||||||||.
BL01857___gab 797 ACTGGGTTTCCGACGGGGCAAACCGCTATATTGTGGAAGACGATTATGAC 846
BSNT_00684___ 847 AGTGAATTCACATATGATGTA--GACAGTATTCCGGCGCTGCAAAGCCTC 894
||.|||||.|.|||.| |.| ||.|..||.||.||.|||||||||||.
BL01857___gab 847 AGCGAATTTAAATACG--GGAGCGATACGATCCCCGCCCTGCAAAGCCTT 894
BSNT_00684___ 895 GACCGTTTTCAAAATGTCATCTATATGGGAACCTTTTCAAAGTCCCTTCT 944
|||||.|.|.||||.||||||||.||.||.||.||||||||.||.|||||
BL01857___gab 895 GACCGCTCTGAAAAAGTCATCTACATCGGCACTTTTTCAAAATCGCTTCT 944
BSNT_00684___ 945 CCCCGGCTTGCGGATCAGCTATATGGTGTTGCCGCCTGAGCTGTTGAGGG 994
.||.|||.||.|.||||||||||||||..||||||...|||||.|||.|.
BL01857___gab 945 TCCGGGCCTGAGAATCAGCTATATGGTACTGCCGCAAAAGCTGCTGAAGC 994
BSNT_00684___ 995 CATAC--AAACAGCGGGGCTATGATCTGCAGACTTGCTC--ATCACTC-- 1038
.|||| |||.|| |||...||.||| .|||.||
BL01857___gab 995 GATACAGAAAAAG--------------GCACCATTTCTCGATTCAATCGA 1030
BSNT_00684___ 1039 -----------ACACAGCTCACCCTGCAGGAATTTATCGAGTCTGGTGAA 1077
||.||||||.|||||||||||.|.|||||.||.||.||.
BL01857___gab 1031 GCAGCGTCTTAACGCAGCTCGCCCTGCAGGAACTGATCGAATCGGGGGAG 1080
BSNT_00684___ 1078 TATCAGAAGCATATAAAAAAAATGAAGCAGCATTATAAAGAAAAGAGAGA 1127
||.||.|||||.||.||.||||||||.|||..|||..||.|||||.| ||
BL01857___gab 1081 TACCAAAAGCACATTAAGAAAATGAACCAGATTTACGAAAAAAAGCG-GA 1129
BSNT_00684___ 1128 -ACGCCTGATCACCGCTTTAGAAGC--------AGAGTTCAGCGGAGAGG 1168
|.|.|||||| .||||| |.|.||.|.|||...||
BL01857___gab 1130 CAAGGCTGATC--------GGAAGCCTTGTCAAACACTTTAACGGCCGGG 1171
BSNT_00684___ 1169 TTACCGTAAAAGGGGCAAATGCGGGGCTGCATTTTGTTACCGAATTTGAT 1218
|.|...|.|||||.|..|..||.||.||.||.|||||..||||.|||||.
BL01857___gab 1172 TCAAAATTAAAGGCGAGAGCGCAGGCCTTCACTTTGTGGCCGATTTTGAA 1221
BSNT_00684___ 1219 ACCAGG--CGCACCGAACAAGACATCCTGTCACATGC-------TGCCGG 1259
|| || .|.|..|||.||||..|..|.|.|...|| .|.|||
BL01857___gab 1222 AC--GGATAGAAGTGAAGAAGAGGTTTTATTAAGAGCAAAGGAAAGGCGG 1269
BSNT_00684___ 1260 GCTGCAGCTTGAAATATTCGGAATGAGCCGATTTAACTTGAAGGAAA--- 1306
| |.||..|.|.|||.|||||.||.||| ||.|.||.||||
BL01857___gab 1270 G-------TCGAGGTTTACGGCATGAGTCGGTTT-ACGTTAAAGAAAGAG 1311
BSNT_00684___ 1307 ---ACAAGCGGCAAACGGGCAGG------------CCTGCTCTCATT--- 1338
||| ||||..|.||| |.|||||..|||
BL01857___gab 1312 CAGACA------AAACATGAAGGAACGGTATCGCTCGTGCTCGGATTCGC 1355
BSNT_00684___ 1339 ----ATCGGCTTTGCACGGCTGA--AG---GAAGAAGATGTTCAGGCGGG 1379
|||| |.||.|| || ||.||| |||
BL01857___gab 1356 CAAAATCG--------CTGCCGATCAGATCGACGAA-----------GGG 1386
BSNT_00684___ 1380 TGTGC--AGCGGCTTTTCAAAGCGGTTTACGGACATAAAAA-----AATC 1422
..||| | |||||...|||||||.|.|||..||.|.|| ||
BL01857___gab 1387 ACTGCCAA---GCTTTATGAAGCGGTATGCGGTGATGAGAAGCTTTAA-- 1431
BSNT_00684___ 1423 CCCGTTACAGGGGATTGA 1440
BL01857___gab 1431 ------------------ 1431
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