Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00680 and BL01853
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:18
# Commandline: needle
# -asequence dna-align/BSNT_00680___ycnC.1.5803.seq
# -bsequence dna-align/BL01853___ycnC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00680___ycnC-BL01853___ycnC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00680___ycnC-BL01853___ycnC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00680___ycnC
# 2: BL01853___ycnC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1045
# Identity: 548/1045 (52.4%)
# Similarity: 548/1045 (52.4%)
# Gaps: 323/1045 (30.9%)
# Score: 1309.5
#
#
#=======================================
BSNT_00680___ 1 ATGCTTGATAAAAAAACAGATATCTTGTTAGCCGCGCGAAAGCT-TTTTT 49
|||...||.||||||.|||...||||....|||||...|||||| |||..
BL01853___ycn 1 ATGAACGAAAAAAAAGCAGCAGTCTTAAGGGCCGCCAAAAAGCTGTTTGC 50
BSNT_00680___ 50 CGGAAAAGGATTTTAC-GTCGGTTTCCATGCAGGCGATCGCAGAAGAATG 98
|..||||||.|.|.|| .| |||.|.|||||.||||||||.||||||||
BL01853___ycn 51 CCAAAAAGGCTATCACAAT--GTTGCAATGCAAGCGATCGCTGAAGAATG 98
BSNT_00680___ 99 TAAGATGTCAAAAGCTTCGATATATAAGCTGTTTCAATCTAAAGAAGATC 148
.||.|||||||||||.||.||.|||||.||||||||||||||||||||||
BL01853___ycn 99 CAAAATGTCAAAAGCATCTATTTATAAACTGTTTCAATCTAAAGAAGATC 148
BSNT_00680___ 149 TGCTTTTGGAGCTGCTGTCATTTAACCAG------AAGC---AAATGGTG 189
| .||||||.||||.|.|.|| |||| |||||.||
BL01853___ycn 149 T---------TCTGCTGGCATTGATCAAGTTCAGAAAGCATGAAATGCTG 189
BSNT_00680___ 190 -------GCCGCGGCCTCAAGACTTCAGGAAAATACCGCACTTACACCGG 232
||..||.|.||||.|| |||| |||.|.||.||.|||.
BL01853___ycn 190 AACAAAAGCGCCGTCATCAATAC----GGAA---ACCTCGCTGACGCCGA 232
BSNT_00680___ 233 AGGAGCGTTTGACGCAAAAGGTCAAAATGGAACTGGA------GGGCTTC 276
|.||..|.|| |||.||| |||||.|...|||| ||..|||
BL01853___ycn 233 AAGAAAGATT--CGCTAAA----AAAATCGCTTTGGAGATTACGGAATTC 276
BSNT_00680___ 277 AGGCGGAATCAG-CAGTTTTTCAATAT--------------GCTGACCTA 311
||| |.||.|.| ||.|||.|||||.| |.|.|.||.
BL01853___ycn 277 AGG-GAAAACCGCCAATTTATCAATTTCATCTCCAATGAGGGATCATCTC 325
BSNT_00680___ 312 CGGAAACCCCAAGCTGCATAATGACCGGGTCAAACAGCATATCCATCAGA 361
||||.||| |||..|| |.|||.|||||.|..|..|.|
BL01853___ycn 326 CGGATACC-------GCAGTAT-------TTAAAAAGCATCTGAAAGAAA 361
BSNT_00680___ 362 CCAGATCGACGATTATCTGCTGGCACCGCGATTCGCTGATCCAGGCGTAT 411
|.|.|||.|.|||||||.|||||||....||.||..|.||.||.|||||.
BL01853___ycn 362 CAAAATCAATGATTATCAGCTGGCATAAAGACTCTATCATTCAAGCGTAC 411
BSNT_00680___ 412 GGAGAA----ACCATTCTCCCGTTTGTGTGGGATTTGGTTATCATTCTTC 457
||.||| .|.| .||||||.|.||||||.|.||.||||||.|.|
BL01853___ycn 412 GGCGAAGAGGTCGA----GCCGTTTATATGGGATATCGTCATCATTTTCC 457
BSNT_00680___ 458 ACGGCATGATGCGTGA------GTTTTTAAT--GCTGATCAAAATCGAGG 499
||||..|||||.|.|| |||||||.| || |.| |
BL01853___ycn 458 ACGGGCTGATGAGGGAATTCCTGTTTTTAGTCGGC-------ACT----G 496
BSNT_00680___ 500 AAAAACCGCTTGAGCTTGAC------CCGATCGCAGAGTTTATCATCAGC 543
.||||.||| |||.|||| .|||| ||.||
BL01853___ycn 497 GAAAAGCGC---AGCCTGACGTTAAAACGAT--------------TCCGC 529
BSNT_00680___ 544 ACCCTCAATCAGATTATCAAAAACAGGGAAACCCGCCAGT-------CTC 586
||.|| ||||| |.|||| |||
BL01853___ycn 530 -----CATTC--ATTAT-----------------GTCAGTTCTGGACCTC 555
BSNT_00680___ 587 TTCTT----------CCGCCCGAAGCCATCGAG----------------- 609
|||.| |.|..||||| ||| ||
BL01853___ycn 556 TTCATAGAGAAAAAGCTGAACGAAG--ATC-AGAAAAGTTCATTAAATGA 602
BSNT_00680___ 610 ---CTTTA--------TATTC--AT---TCAGCATCCT-----CCTACAA 638
|.||| ||||| || |||.|||.|| ||
BL01853___ycn 603 AGACATTATTGCCTCCTATTCGAATTTCTCATCATGCTGGGCACC----- 647
BSNT_00680___ 639 GCC---AAAGGATAAAT------CAGTCCTATTATCGGAAAGCCTGAAGG 679
||| |||.||..||| .||.|||.|| |.|||..||||
BL01853___ycn 648 GCCCAAAAAAGAGGAATTGCTTGAAGACCTTTT---GCAAAAACTGA--- 691
BSNT_00680___ 680 AATTACATAAAGGCATCTCTTCCCTGTCCGCCGC-GGACTATG---ACGT 725
|.|..||| ||.|||||.|| |||.| .|||.||| .|||
BL01853___ycn 692 ----AAACCAAG--ATTTCTTCGCT----GCCACAAGACGATGTTTCCGT 731
BSNT_00680___ 726 ---AGA--TGAACTGACATCCGCAGCCGCCA--TGCTGGAGGAAGAAGCG 768
||| || |||.|..|||||| | ||||| ||||
BL01853___ycn 732 GACAGAATTG--CTGTCTGCCGCAG-----ATTTGCTG--------AGCG 766
BSNT_00680___ 769 AAGAAGG----------AAGAACCCCGCGCTTTTTTACTCAAATCACTGA 808
|.|| | |.||.||.|||.|.|.||||.|.||..|.||..
BL01853___ycn 767 AGGA--GCTTTTCGCCAATGAGCCACGCACGTATTTAATTAAGGCTCTCC 814
BSNT_00680___ 809 TTGGCTATC-TGGAACAAACCAGTGTTTTAACACAGCCCGTTTCCATGTT 857
|||..||.| |||||.||.|.|| ||| .|||
BL01853___ycn 815 TTGATTACCTTGGAAAAATCGAG------------GCC---ATCC----- 844
BSNT_00680___ 858 AAAAACACTGTT----AATTAC------TTAG------------- 879
||.||..|||| ||.||| ||||
BL01853___ycn 845 -AATACGATGTTTCACAAATACAAACGATTAGTATAAAAGAATAA 888
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