Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_00380 and BL01843

See Amino acid alignment / Visit BSNT_00380 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:02
# Commandline: needle
#    -asequence dna-align/BSNT_00380___ybfA.1.5803.seq
#    -bsequence dna-align/BL01843___ybfA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00380___ybfA-BL01843___ybfA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00380___ybfA-BL01843___ybfA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00380___ybfA
# 2: BL01843___ybfA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 960
# Identity:     674/960 (70.2%)
# Similarity:   674/960 (70.2%)
# Gaps:          72/960 ( 7.5%)
# Score: 2269.0
# 
#
#=======================================

BSNT_00380___      1 GTGGGGATTGATTTGAAAACAAGAGAATCA-TCTGTCGGATTAAAATTCA     49
                     .|||.|        ||||.|     ||||| |||.....|||||||||||
BL01843___ybf      1 ATGGCG--------GAAATC-----AATCATTCTACAACATTAAAATTCA     37

BSNT_00380___     50 GAAAGTTCAATCGATTTTATACAAACGTCCTTGGTTTCCTTAATGAGCAC     99
                     ||||||||||||||||.||||||||.||.||.|||||.||.|||||.||.
BL01843___ybf     38 GAAAGTTCAATCGATTCTATACAAATGTGCTCGGTTTTCTGAATGAACAT     87

BSNT_00380___    100 ATTTACGACAGCCCGTTTTCCTTAACAGAAACACGGATTTTATTTGAGAT    149
                     |||||.||||||||.|||||.||.||.|||||.|||||.||||||||.||
BL01843___ybf     88 ATTTATGACAGCCCTTTTTCATTGACGGAAACCCGGATATTATTTGAAAT    137

BSNT_00380___    150 TTATAATACGCCTAATTGTACGGCAAAAGCT-CTTCAGGATAAGCTGGGG    198
                     |.|.||||||.|..|||||||.||.||| || .||||.||||.|||.||.
BL01843___ybf    138 TCACAATACGGCCGATTGTACAGCCAAA-CTGATTCAAGATACGCTCGGC    186

BSNT_00380___    199 CTTGACCGGGGATATGTCAGCAGGATTGTGAAGCAGTTTGAAATAGAAGA    248
                     ||.||||||||.|||||||||.||||..||||||.||||||||.||||.|
BL01843___ybf    187 CTGGACCGGGGCTATGTCAGCCGGATCCTGAAGCGGTTTGAAAAAGAAAA    236

BSNT_00380___    249 TTTGATCTATAAACAGAGGAGCAAAGATGAC-GCTCGCCACCATTACATT    297
                     |.||.||||||||.||||.|||.|.||.||| || |||.||||.||.||.
BL01843___ybf    237 TATGGTCTATAAAAAGAGAAGCGAGGAGGACAGC-CGCAACCACTATATC    285

BSNT_00380___    298 TTTGTCACAGAAACA-----GGAAAAACGATTTATAAAAAGCTGGAGGAG    342
                     |     ||..||.||     ||..||.|.|||||||||||||||||||..
BL01843___ybf    286 T-----ACTTAACCAGCTTCGGTGAATCCATTTATAAAAAGCTGGAGGCC    330

BSNT_00380___    343 AAAGCCAACGAACAAGTAGAACTGATGCTGAAGGAAATCAACCAAAAGG-    391
                     ||||||||..|||||.|.|||...|||||||||.|.|||.||     || 
BL01843___ybf    331 AAAGCCAATCAACAAATCGAAAACATGCTGAAGCATATCGAC-----GGC    375

BSNT_00380___    392 ----AGCAGCAGAAGCTTTCCGAGGCGATG---GCAGAGATTGAAGAGAT    434
                         |.|||.|.|||||..|.|||||.|||   .||   ||||||     
BL01843___ybf    376 CGCCATCAGGAAAAGCTGACGGAGGCAATGAATACA---ATTGAA-----    417

BSNT_00380___    435 CCTTTCACA--GTCG------CTTTCTGCCAGAACATCAGAGATATCGAT    476
                        |.||.|  ||||      ||..||.||..||.|||.|...|.||.||
BL01843___ybf    418 ---TGCATATTGTCGGAACACCTGCCTCCCGAAAAATCGGCCGTTTCTAT    464

BSNT_00380___    477 TAGAGATTATTTTCTTTCGGAGGATATTCAACTCCTTATTGAGAAACAAA    526
                     .||||||||.|.|.|.|||||.|||||..||||..|.||.||.|||||..
BL01843___ybf    465 AAGAGATTACTATATATCGGACGATATCAAACTGATGATCGAAAAACAGC    514

BSNT_00380___    527 GACAATTTTACGCGGAGGCTCACGGTTGGGATGACACGTTTTTAGCTTAT    576
                     |....||.|||||||||.|.|||||.|||||.||..|.|||||.|.|||.
BL01843___ybf    515 GTGCCTTCTACGCGGAGACACACGGCTGGGACGATTCATTTTTGGATTAC    564

BSNT_00380___    577 CTTCAGGAGACATTTGACGCTGACATCGAAAAAATATGGATTGCGGAAAG    626
                     |||||.||.|||||.|||||.||.|||||||||||.|||||.||.||.||
BL01843___ybf    565 CTTCACGAAACATTCGACGCCGAGATCGAAAAAATCTGGATCGCAGAGAG    614

BSNT_00380___    627 CGGCGGGAAATTTGCCGGCTCTGTCGGGTTGGTCAAGCACGATGAAAAGA    676
                     ||.|||.|.|||.||.||.|.|||||||.|.|||||.|||...|..|.||
BL01843___ybf    615 CGCCGGAAGATTCGCGGGATGTGTCGGGCTCGTCAAACACCCCGGCAGGA    664

BSNT_00380___    677 CAGTCCAGCTCAGATGGTTTCTGGTTGATGCGGATTTTCGG-GGCAGGGG    725
                     |.||.||||||||||||||||||||.||.||.|.||||||| ..|||||.
BL01843___ybf    665 CCGTGCAGCTCAGATGGTTTCTGGTCGACGCCGCTTTTCGGCACCAGGGA    714

BSNT_00380___    726 GCTTGGCACGCAATTGC----TGGAGCATCTGGTTGCATACTGCCAAGAC    771
                     | |.|||||.|    ||    ||||||||||..|.|..||.|||.||||.
BL01843___ybf    715 G-TCGGCACAC----GCCTCTTGGAGCATCTCATCGATTATTGCAAAGAA    759

BSNT_00380___    772 ATGAAGTTTGACCGCATTTTCCTTTGGACGGTGAGCACGATGGCTGAGGC    821
                     |...|||.|||.||.|||||..|.||||||||.|||||||||||.||.||
BL01843___ybf    760 AATCAGTATGAGCGGATTTTTTTATGGACGGTAAGCACGATGGCCGAAGC    809

BSNT_00380___    822 TCGTCCGCTCTATAAAAAATTTGGATTCAGGATAAGTGAAGTAAAACAAG    871
                     .||.||..|.|||.|||||||.||||||||..|.|..|||||.|||.|.|
BL01843___ybf    810 ACGGCCTTTGTATGAAAAATTCGGATTCAGACTGACGGAAGTGAAAGACG    859

BSNT_00380___    872 AAGCGCCATTATGGGGACAGCAGCTGACAGAAGAACGGTGGGATTTGGAG    921
                     |..|...|||||||||.||||.|||....||||||||.||||||...|||
BL01843___ybf    860 AGACTTTATTATGGGGGCAGCGGCTCCGGGAAGAACGCTGGGATGCCGAG    909

BSNT_00380___    922 CT-GTCATGA    930
                     .| |.| |||
BL01843___ybf    910 TTAGGC-TGA    918


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.