Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00380 and BL01843
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:02
# Commandline: needle
# -asequence dna-align/BSNT_00380___ybfA.1.5803.seq
# -bsequence dna-align/BL01843___ybfA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00380___ybfA-BL01843___ybfA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00380___ybfA-BL01843___ybfA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00380___ybfA
# 2: BL01843___ybfA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 960
# Identity: 674/960 (70.2%)
# Similarity: 674/960 (70.2%)
# Gaps: 72/960 ( 7.5%)
# Score: 2269.0
#
#
#=======================================
BSNT_00380___ 1 GTGGGGATTGATTTGAAAACAAGAGAATCA-TCTGTCGGATTAAAATTCA 49
.|||.| ||||.| ||||| |||.....|||||||||||
BL01843___ybf 1 ATGGCG--------GAAATC-----AATCATTCTACAACATTAAAATTCA 37
BSNT_00380___ 50 GAAAGTTCAATCGATTTTATACAAACGTCCTTGGTTTCCTTAATGAGCAC 99
||||||||||||||||.||||||||.||.||.|||||.||.|||||.||.
BL01843___ybf 38 GAAAGTTCAATCGATTCTATACAAATGTGCTCGGTTTTCTGAATGAACAT 87
BSNT_00380___ 100 ATTTACGACAGCCCGTTTTCCTTAACAGAAACACGGATTTTATTTGAGAT 149
|||||.||||||||.|||||.||.||.|||||.|||||.||||||||.||
BL01843___ybf 88 ATTTATGACAGCCCTTTTTCATTGACGGAAACCCGGATATTATTTGAAAT 137
BSNT_00380___ 150 TTATAATACGCCTAATTGTACGGCAAAAGCT-CTTCAGGATAAGCTGGGG 198
|.|.||||||.|..|||||||.||.||| || .||||.||||.|||.||.
BL01843___ybf 138 TCACAATACGGCCGATTGTACAGCCAAA-CTGATTCAAGATACGCTCGGC 186
BSNT_00380___ 199 CTTGACCGGGGATATGTCAGCAGGATTGTGAAGCAGTTTGAAATAGAAGA 248
||.||||||||.|||||||||.||||..||||||.||||||||.||||.|
BL01843___ybf 187 CTGGACCGGGGCTATGTCAGCCGGATCCTGAAGCGGTTTGAAAAAGAAAA 236
BSNT_00380___ 249 TTTGATCTATAAACAGAGGAGCAAAGATGAC-GCTCGCCACCATTACATT 297
|.||.||||||||.||||.|||.|.||.||| || |||.||||.||.||.
BL01843___ybf 237 TATGGTCTATAAAAAGAGAAGCGAGGAGGACAGC-CGCAACCACTATATC 285
BSNT_00380___ 298 TTTGTCACAGAAACA-----GGAAAAACGATTTATAAAAAGCTGGAGGAG 342
| ||..||.|| ||..||.|.|||||||||||||||||||..
BL01843___ybf 286 T-----ACTTAACCAGCTTCGGTGAATCCATTTATAAAAAGCTGGAGGCC 330
BSNT_00380___ 343 AAAGCCAACGAACAAGTAGAACTGATGCTGAAGGAAATCAACCAAAAGG- 391
||||||||..|||||.|.|||...|||||||||.|.|||.|| ||
BL01843___ybf 331 AAAGCCAATCAACAAATCGAAAACATGCTGAAGCATATCGAC-----GGC 375
BSNT_00380___ 392 ----AGCAGCAGAAGCTTTCCGAGGCGATG---GCAGAGATTGAAGAGAT 434
|.|||.|.|||||..|.|||||.||| .|| ||||||
BL01843___ybf 376 CGCCATCAGGAAAAGCTGACGGAGGCAATGAATACA---ATTGAA----- 417
BSNT_00380___ 435 CCTTTCACA--GTCG------CTTTCTGCCAGAACATCAGAGATATCGAT 476
|.||.| |||| ||..||.||..||.|||.|...|.||.||
BL01843___ybf 418 ---TGCATATTGTCGGAACACCTGCCTCCCGAAAAATCGGCCGTTTCTAT 464
BSNT_00380___ 477 TAGAGATTATTTTCTTTCGGAGGATATTCAACTCCTTATTGAGAAACAAA 526
.||||||||.|.|.|.|||||.|||||..||||..|.||.||.|||||..
BL01843___ybf 465 AAGAGATTACTATATATCGGACGATATCAAACTGATGATCGAAAAACAGC 514
BSNT_00380___ 527 GACAATTTTACGCGGAGGCTCACGGTTGGGATGACACGTTTTTAGCTTAT 576
|....||.|||||||||.|.|||||.|||||.||..|.|||||.|.|||.
BL01843___ybf 515 GTGCCTTCTACGCGGAGACACACGGCTGGGACGATTCATTTTTGGATTAC 564
BSNT_00380___ 577 CTTCAGGAGACATTTGACGCTGACATCGAAAAAATATGGATTGCGGAAAG 626
|||||.||.|||||.|||||.||.|||||||||||.|||||.||.||.||
BL01843___ybf 565 CTTCACGAAACATTCGACGCCGAGATCGAAAAAATCTGGATCGCAGAGAG 614
BSNT_00380___ 627 CGGCGGGAAATTTGCCGGCTCTGTCGGGTTGGTCAAGCACGATGAAAAGA 676
||.|||.|.|||.||.||.|.|||||||.|.|||||.|||...|..|.||
BL01843___ybf 615 CGCCGGAAGATTCGCGGGATGTGTCGGGCTCGTCAAACACCCCGGCAGGA 664
BSNT_00380___ 677 CAGTCCAGCTCAGATGGTTTCTGGTTGATGCGGATTTTCGG-GGCAGGGG 725
|.||.||||||||||||||||||||.||.||.|.||||||| ..|||||.
BL01843___ybf 665 CCGTGCAGCTCAGATGGTTTCTGGTCGACGCCGCTTTTCGGCACCAGGGA 714
BSNT_00380___ 726 GCTTGGCACGCAATTGC----TGGAGCATCTGGTTGCATACTGCCAAGAC 771
| |.|||||.| || ||||||||||..|.|..||.|||.||||.
BL01843___ybf 715 G-TCGGCACAC----GCCTCTTGGAGCATCTCATCGATTATTGCAAAGAA 759
BSNT_00380___ 772 ATGAAGTTTGACCGCATTTTCCTTTGGACGGTGAGCACGATGGCTGAGGC 821
|...|||.|||.||.|||||..|.||||||||.|||||||||||.||.||
BL01843___ybf 760 AATCAGTATGAGCGGATTTTTTTATGGACGGTAAGCACGATGGCCGAAGC 809
BSNT_00380___ 822 TCGTCCGCTCTATAAAAAATTTGGATTCAGGATAAGTGAAGTAAAACAAG 871
.||.||..|.|||.|||||||.||||||||..|.|..|||||.|||.|.|
BL01843___ybf 810 ACGGCCTTTGTATGAAAAATTCGGATTCAGACTGACGGAAGTGAAAGACG 859
BSNT_00380___ 872 AAGCGCCATTATGGGGACAGCAGCTGACAGAAGAACGGTGGGATTTGGAG 921
|..|...|||||||||.||||.|||....||||||||.||||||...|||
BL01843___ybf 860 AGACTTTATTATGGGGGCAGCGGCTCCGGGAAGAACGCTGGGATGCCGAG 909
BSNT_00380___ 922 CT-GTCATGA 930
.| |.| |||
BL01843___ybf 910 TTAGGC-TGA 918
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