Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00643 and BL01831
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:16
# Commandline: needle
# -asequence dna-align/BSNT_00643___yclA.1.5803.seq
# -bsequence dna-align/BL01831___yclA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00643___yclA-BL01831___yclA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00643___yclA-BL01831___yclA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00643___yclA
# 2: BL01831___yclA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 908
# Identity: 619/908 (68.2%)
# Similarity: 619/908 (68.2%)
# Gaps: 70/908 ( 7.7%)
# Score: 1956.0
#
#
#=======================================
BSNT_00643___ 1 TTGGATATTCGCCAGCCTCGATACTTCATTACCATTGCCCAAGAACAGAA 50
.||||||||||||||.....|||||||.||||.||.||||..|||...||
BL01831___ycl 1 ATGGATATTCGCCAGTTAAAATACTTCGTTACAATCGCCCGGGAAGGAAA 50
BSNT_00643___ 51 AATTACGTCCGCAGCCAAAAAGCTTCACATGGCGCAGCCGCCTTTAAGCA 100
||||||..|.||.||.||...|||.||.||.||.||||||||..|...||
BL01831___ycl 51 AATTACAACGGCGGCGAAGCGGCTCCATATTGCACAGCCGCCGCTCTCCA 100
BSNT_00643___ 101 GGCAGCTCAAACAGCTGGAGGACGAGCTTGGTGTTGTTCTGTTTGACCGG 150
|||||.|.||.|||.||||.||.|||||.||.||.|||.|.|||||||||
BL01831___ycl 101 GGCAGTTGAAGCAGATGGAAGAGGAGCTCGGAGTCGTTTTATTTGACCGG 150
BSNT_00643___ 151 AACAAGAAAAAACAAATGACTCTTACATATGAAGGAGCTGTTTTTCTAAA 200
|||||.||.|||.|..||||..|.||.||.|||||||..||||||.|.||
BL01831___ycl 151 AACAAAAAGAAAAACCTGACGTTGACCTACGAAGGAGAAGTTTTTTTGAA 200
BSNT_00643___ 201 AAGAGCAAAAGAGATTCTGCATAGGTTTGAAGATGCAGTCATTGAGGTAC 250
||||||||||||.||.|||||.|.|.||||.|||.|..||.|.|||||.|
BL01831___ycl 201 AAGAGCAAAAGAAATCCTGCACAAGCTTGAGGATTCCATCTTGGAGGTGC 250
BSNT_00643___ 251 AGGAGCTGAAGGAGGAAGTAGCCGGTACACTTGCCGTGGGATCAACGATT 300
.|||||||...||.|||||...|||.||.||||||||.||.||.||||||
BL01831___ycl 251 GGGAGCTGCGTGAAGAAGTCAACGGAACCCTTGCCGTCGGCTCGACGATT 300
BSNT_00643___ 301 TATTGCGCGGCTCTGATGCTTGAAAAAGTAACACAGATCAAAGAGAGATA 350
||.||||||||.|||.||||...||||||..|..||||||.|||.|..||
BL01831___ycl 301 TACTGCGCGGCCCTGCTGCTCTCAAAAGTCTCGAAGATCAGAGATATGTA 350
BSNT_00643___ 351 CCCCCATCTCACCTTTAATATTTGGGAAAATGAGCCCGCGACACTGTTA- 399
.||..||.|.|..|||||.|||||||||..||||| |..|||.|.||
BL01831___ycl 351 TCCGAATTTAATGTTTAACATTTGGGAAGGTGAGC---CTTCACGGCTAA 397
BSNT_00643___ 400 --GAGCTGCTGGAAAGCCGGCAAATCGATGCGGCGGTCACGACAACACTG 447
|||||.||||||||||||||.||||||||.||.|||||||||||.|..
BL01831___ycl 398 GCGAGCTCCTGGAAAGCCGGCAGATCGATGCAGCCGTCACGACAACGCCT 447
BSNT_00643___ 448 AT------CAAAAGTGACACAGTACAATTCAAGCAGCTTG-ATGACATTC 490
|| ||||| |||| |.|.||||..|||.|| ..||..|||
BL01831___ycl 448 ATCCACAGCAAAA---ACAC----CGAATCAAAAAGCCTGCCGGAGGTTC 490
BSNT_00643___ 491 CATGTGTGCTCGTGCTTTCAGATGAAGCCGGATATCCGT------GC--- 531
||||...|||.||.|||.||| ||| |||.|| ||
BL01831___ycl 491 CATGCAAGCTTGTTCTTCCAG--------GGA-ATCAGTCGTATGGCTTA 531
BSNT_00643___ 532 ---GGAGACACCATTAAG--ATGGAGGACATT-----CCTTCATTTCCGC 571
|||||..|| | |||.|.||.||| || |.||||
BL01831___ycl 532 AAAGGAGAAGCC-----GGAATGAAAGAAATTGCCGGCC-----TGCCGC 571
BSNT_00643___ 572 TGATCCTGCTGCGGCCTGTC-AACGGAAAAGGCGTCTATAATCAGGTCAT 620
||||.|||||..|||| ||| .||||||||||..|.||..|..|||||.|
BL01831___ycl 572 TGATTCTGCTCAGGCC-GTCGCACGGAAAAGGGATTTACGACGAGGTCGT 620
BSNT_00643___ 621 GAATGAATTTC-ATCGTTTGAACCTGGAGCCGCGCATTGTTTGTGAATGC 669
..||.|.|||| |||.|.|| .|||.||.|||.|..|.||||||||.|||
BL01831___ycl 621 CCATCACTTTCAATCATCTG-GCCTCGAACCGAGGGTCGTTTGTGAGTGC 669
BSNT_00643___ 670 CACGACTCTGCAACTTTGCTCAGCCTCGTGTCATCCGGATTCGGCGCGTC 719
||.||.|||.||||..|.|||||||||||..|.||.||||||||.|||.|
BL01831___ycl 670 CATGATTCTACAACGCTTCTCAGCCTCGTCACTTCGGGATTCGGAGCGAC 719
BSNT_00643___ 720 TATTTTGC--CTGTCACAATGATTCCCGTTCATATGAGAAATCACGTTCA 767
.|||.||| |||| |.|||.|.||.|..|||.|...|...||.|||||
BL01831___ycl 720 GATTCTGCCGCTGT--CCATGCTGCCGGCGCATTTTGCACGGCATGTTCA 767
BSNT_00643___ 768 CACCGTCCATATCGAAAATAATCCCTTCATTATGACA-CCGGCTGTCATG 816
.||..|..|.||..||||.|||||.||||||.|| || |||.|||||.|.
BL01831___ycl 768 GACATTGGAAATTCAAAACAATCCGTTCATTCTG-CAGCCGTCTGTCGTT 816
BSNT_00643___ 817 TGGAGAACGGACAGTTATTTGCCTAAACC-GGCACAGCAATTTTTGGATT 865
|||||..|.|.|||||.|.||||.||.|| |..|.|| |||||||||.||
BL01831___ycl 817 TGGAGGGCCGGCAGTTTTCTGCCGAAGCCTGTGAGAG-AATTTTTGGCTT 865
BSNT_00643___ 866 TATTTTAA 873
||||||.|
BL01831___ycl 866 TATTTTGA 873
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