Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06192 and BL01830
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:09
# Commandline: needle
# -asequence dna-align/BSNT_06192___rocR.1.5803.seq
# -bsequence dna-align/BL01830___rocR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06192___rocR-BL01830___rocR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06192___rocR-BL01830___rocR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06192___rocR
# 2: BL01830___rocR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1483
# Identity: 999/1483 (67.4%)
# Similarity: 999/1483 (67.4%)
# Gaps: 167/1483 (11.3%)
# Score: 3254.0
#
#
#=======================================
BSNT_06192___ 1 GTGGTCAAAGACAGCGAATTCCTCACATTGGTTTTTCAGAGCATTTTAGA 50
.||.|.||.||....||.||.||.|.|.|..|||||||..|.|||.||||
BL01830___roc 1 TTGCTGAAGGATTATGATTTTCTGAAACTTATTTTTCAAGGAATTATAGA 50
BSNT_06192___ 51 TGAAATCGATGTTGGCCTGCACGTGGTAGACGAGCATGGAAACACAATC- 99
||||||||||.|.|||.||||.||.||.||.||..|.|| ||| |||
BL01830___roc 51 TGAAATCGATATCGGCTTGCATGTCGTCGATGAAAACGG---CAC-ATCT 96
BSNT_06192___ 100 ---GTTTATAACAATAAAATGATGCAGATTGAAGATATGGAGAAGCATGA 146
||.||||||||.||.||||..||||||||||..|||| |||.
BL01830___roc 97 GTTGTCTATAACAAAAAGATGAGCCAGATTGAAGGGATGG------ATGT 140
BSNT_06192___ 147 CGTCTTGAAT---------AAAAACCTGATGGATGTGTTTATGTTTTCAA 187
||.| .|| ||||||.||.||||.|||||||.||||.|.|
BL01830___roc 141 CGGC---GATGTGCTCGGCAAAAACGTGCTGGACGTGTTTACGTTTGCCA 187
BSNT_06192___ 188 AGCAGCAGGACAGCACACTGGTACAGGCTCTTCAGGAAGGCAAGACGATT 237
..|||||.||||||||.||..|.|||||.||.||..|.||.||.||||..
BL01830___roc 188 GCCAGCATGACAGCACCCTCCTGCAGGCGCTGCATCACGGGAAAACGAAC 237
BSNT_06192___ 238 AAAAACGTCAAACAGAGCTATTTCAATAATAAAGGCCAGGAAATTACGAC 287
||||||||||||||||..||.||.|||||.|||||.||||||||||||||
BL01830___roc 238 AAAAACGTCAAACAGACTTACTTTAATAACAAAGGACAGGAAATTACGAC 287
BSNT_06192___ 288 GATCAATCATACATATCCCATCGTCCAAGACGGCAA----AATCAGGGGC 333
..||||||||||||..|||||..|..||.||||.|| || |||.||
BL01830___roc 288 CGTCAATCATACATTCCCCATTATGGAAAACGGGAATACGAA--AGGAGC 335
BSNT_06192___ 334 GCTGTTGAAATTGCCAAGGATGTGACAAAGCTTGAACGGCTGATCAGGGA 383
| ||.||.||||||||.|||||.||||||||||||||.||||||||.||
BL01830___roc 336 G--GTCGAGATTGCCAAAGATGTCACAAAGCTTGAACGCCTGATCAGAGA 383
BSNT_06192___ 384 GAATATGAACAAAAAAGGCAGCACAACCTATACGTTTGACAGTATTCTCG 433
.|||||||||||||.||..|||||||..||||||||||||||..|..|||
BL01830___roc 384 AAATATGAACAAAACAGAAAGCACAAAGTATACGTTTGACAGCCTGATCG 433
BSNT_06192___ 434 GCACCAGTCCGGCCATTCAA-GACGTCATCGAAAACGCCAAGCGGGCAAC 482
||..|||||||| |.||||| ||.|||||.|||.|.||.||||||||.||
BL01830___roc 434 GCGTCAGTCCGG-CGTTCAAGGAAGTCATTGAACATGCAAAGCGGGCGAC 482
BSNT_06192___ 483 CCGTACGTCATCATCTGTCCTTCTCGCAGGCGAAACCGGCACGGGAAAAG 532
|||.||.||.||.||..|.||..|||..|||||.|||||.||.|||||||
BL01830___roc 483 CCGGACCTCTTCCTCCATTCTAATCGTTGGCGACACCGGAACCGGAAAAG 532
BSNT_06192___ 533 AACTGTTCGCGCAAAGTATCCATAATGGAAGCGATCGTTCTGGCGGCCCG 582
||||||||||.||||||||.|||||.||||||.|.||.||....|||||.
BL01830___roc 533 AACTGTTCGCCCAAAGTATACATAACGGAAGCCAGCGCTCAACGGGCCCA 582
BSNT_06192___ 583 TTTATTTCGCAAAACTGTGCGGCACTGCCAGACAGCCTTGTCGAAAGCAT 632
||.||.||||||||||||||.||.||.||.||.||||||||||||.||.|
BL01830___roc 583 TTCATCTCGCAAAACTGTGCAGCCCTCCCGGAAAGCCTTGTCGAAGGCCT 632
BSNT_06192___ 633 TTTGTTTGGGACGAAAAAAGGCGCGTTTACCGGCGCTGTCGACCAGCCCG 682
.||.||.||.|||...||||||||.||.||.||.||.||.||.|..||.|
BL01830___roc 633 ATTATTCGGCACGGTCAAAGGCGCATTCACGGGAGCCGTGGATCGTCCGG 682
BSNT_06192___ 683 GCCTGTTTGAACAAGCCCATGGCGGCACACTGCTGTTAGATGAAATCAAC 732
|.||.||.||||||||..|.|||||.||||||||..|.||.||||||||.
BL01830___roc 683 GTCTTTTCGAACAAGCTGACGGCGGAACACTGCTCCTTGACGAAATCAAT 732
BSNT_06192___ 733 TCGCTAAATCTCAGCCTTCAGGCGAAGCTGCTGCGCGCCCTTCAAGAACG 782
||..|..|..||||..|.|||||.|||||..|||||||..||||||||
BL01830___roc 733 TCTTTGGACTTCAGATTGCAGGCAAAGCTTTTGCGCGCGATTCAAGAA-- 780
BSNT_06192___ 783 GAAA---ATCAGGCGCATCGGTTCAACAAAGGATACACCGATTGACGTAC 829
||| ||||||||.|||||..|..||||||||||.|||||.|||||..
BL01830___roc 781 -AAAACGATCAGGCGGATCGGCGCTTCAAAGGATACTCCGATCGACGTCA 829
BSNT_06192___ 830 GTATTATTGCCACGATGAATGAAGACCCAATTGATGCAATTG-CA--GGC 876
|.||.||.||.||||||||.|||||.|||.|.||.|| || || |||
BL01830___roc 830 GGATCATCGCGACGATGAACGAAGATCCAGTCGACGC---TGTCAGCGGC 876
BSNT_06192___ 877 GAACGAATGCGGAAGGACTTGTATTATAGGCTGAGTGTCGTCACACTGAT 926
.|..|..||||.||.||.||||||||.||||||||.||||||||..||.|
BL01830___roc 877 CAGAGGCTGCGAAAAGATTTGTATTACAGGCTGAGCGTCGTCACCTTGTT 926
BSNT_06192___ 927 CATCCCGCCGCTTCGGGAACGAAAAGAAGACATCTTGCTTCTCGCGTCGG 976
.||.||.||..|....||.||.||.|||||.||..|||..|||.||..|.
BL01830___roc 927 TATTCCTCCATTAAAAGACCGGAAGGAAGATATTATGCCGCTCACGCAGC 976
BSNT_06192___ 977 AGTTCATCCAGAAAAACAAC-CATCTGTTCCAAATGAA---------TGT 1016
|.||.|||.|.|||.||||| ||| |||||||||||.| |.|
BL01830___roc 977 ATTTTATCGACAAATACAACGCAT-TGTTCCAAATGGAGGTCAAGGGTTT 1025
BSNT_06192___ 1017 TGAACACATCAGCGATGACGTGAAGCAATTTTTCCTTTCTTATGACTGGC 1066
|||| ||.||.|||..||..||..|.|||||.||.||.||||
BL01830___roc 1026 TGAA---------GAAGAGGTGCGGCGGTTCCTGCTTTCATACGATTGGC 1066
BSNT_06192___ 1067 CGGGAAATATTCGCGAGCTTGAGCATATGATCGAAGGCGCAATGAATTTC 1116
|||||||..|..|.||||||||.|||.|.||.||||||||.||||||||.
BL01830___roc 1067 CGGGAAACGTCAGGGAGCTTGAACATTTAATTGAAGGCGCCATGAATTTG 1116
BSNT_06192___ 1117 ATGACGGACGA--GCAAA--CGA--TTACGGCTTCCCATCTGCCCTATCA 1160
|||.|..|||| .|||| ||| |.||| ||.||.||.|..||
BL01830___roc 1117 ATGTCCTACGAAGACAAAATCGAGCTGACG------CACCTTCCATTGCA 1160
BSNT_06192___ 1161 ATACCGCATGAAAATCAAGCCGGCTGACATCCCAGA------GCCGGAAA 1204
||||.|.|.|||| |.|| ||||..| ||| ||||
BL01830___roc 1161 ATACAGGACGAAA--CCAG-CGGCAAA------AGAGCAGCTGCCG---- 1197
BSNT_06192___ 1205 CACCAAGAC-------------ACCAGC------CAGCCGCGGAC----- 1230
||.||.|.| .||.|| |.|||.|||.|
BL01830___roc 1198 CAGCAGGGCTATGATCTGTTCGCCCCGCTTCCTTCCGCCTCGGCCGCTCC 1247
BSNT_06192___ 1231 -TTAAAAGAAAAAAT--GGAAAGCTTCGAAAAATATGTGAT--AGAGAAC 1275
|||||.|||.|||| .|||.|| ||||||.|||...|| |.|.|||
BL01830___roc 1248 TTTAAAGGAACAAATCGAGAATGC--CGAAAAGTATTATATTCAAAAAAC 1295
BSNT_06192___ 1276 GTGTTAAGAAAACACGGCCATAACA---TCTCGAAAGCTGCTCAGGAGCT 1322
.|||||.||| .||.||.||| |.||..||||.||||.||.|||
BL01830___roc 1296 -CGTTAAAAAA----TGCAATTACAATGTGTCACAAGCGGCTCGGGTGCT 1340
BSNT_06192___ 1323 TGGCATCAGCAGACAAAGCCTCCAATATCGGCTGAAGAAAT--------- 1363
.||.||||||||.||||||||.|||||..||||.||.||||
BL01830___roc 1341 GGGGATCAGCAGGCAAAGCCTGCAATACAGGCTTAAAAAATGGAAGATCC 1390
BSNT_06192___ 1364 -TTTC---------TCACTCGTCTAACGAATAA 1386
.||| ||| ||||.|
BL01830___roc 1391 GCTTCGATCAGGAATCA----------GAATGA 1413
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