Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00610 and BL01820
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:14
# Commandline: needle
# -asequence dna-align/BSNT_00610___nucA.1.5803.seq
# -bsequence dna-align/BL01820___nucA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00610___nucA-BL01820___nucA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00610___nucA-BL01820___nucA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00610___nucA
# 2: BL01820___nucA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 486
# Identity: 308/486 (63.4%)
# Similarity: 308/486 (63.4%)
# Gaps: 75/486 (15.4%)
# Score: 944.5
#
#
#=======================================
BSNT_00610___ 1 GTGAACATCACGACGGACATCATAAAAAC------GAT-AC--TTCTCGT 41
|.|||||..||.|||.| ||| || |.||||.
BL01820___nuc 1 ------------ATGGACAAGATTAAATCTTTGCTGATCACCTTGCTCGC 38
BSNT_00610___ 42 CATCGTCATCAT-AGCAGCTGCAGCTGTCGGCCTGATAAAAGGAGACTTT 90
|.|||.|.||.| |.|| ||||..|..||...||.||||||
BL01820___nuc 39 CGTCGCCGTCGTGATCA----------TCGGTATTGTATCTGGCGACTTT 78
BSNT_00610___ 91 TTCTCAGCTGATCA----------------AAAAACGTCTCAAACGAAAG 124
|||.|..|.||.|| .||||||.|||||||
BL01820___nuc 79 TTCACTTCAGAACACCAGCCTTCGGGCCGGCAAAACGGCTCAAAC----- 123
BSNT_00610___ 125 AATATGATGAAACAATCGC----CTTCCCATCTGACCGGTATCCCGAAAC 170
||.|||| ||..|| .||.||.||.|||||.|||||.|||||
BL01820___nuc 124 --TACGATG----AAGTGCTGATTTTTCCTTCGGACCGCTATCCTGAAAC 167
BSNT_00610___ 171 TGCCAAGCATATT---AAGGATGCGATAAATGAGGGGCACTCAGAGGTGT 217
.|.|...||.||| ||| ||.||.||..|.||||||||.||..|.|
BL01820___nuc 168 AGGCGCACACATTCGAAAG---GCTATCAAAAAAGGGCACTCCGAAATCT 214
BSNT_00610___ 218 GCACTATTGACAGAGACGGAGCTGAAGAACGCCGCGAGCAATCATTAAAG 267
|.||.||.|||||.||||||||.|..||||||||..||.|.|||||.||.
BL01820___nuc 215 GTACGATCGACAGGGACGGAGCCGCCGAACGCCGAAAGGATTCATTGAAA 264
BSNT_00610___ 268 GACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCAT 317
||.||.|||||||||...||.||||||.|.||.||.|||||.||||||||
BL01820___nuc 265 GATGTTCCTTCCAAATCAGGCTATGACCGCGACGAGTGGCCGATGGCCAT 314
BSNT_00610___ 318 GTGCAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTC-TCCCG-C 365
||||.||||||||||....||.||||||||.||.| ||.|| .|||| |
BL01820___nuc 315 GTGCGAAGAAGGCGGAACAGGTGCTTCTGTCGAGT--ATATCAGCCCGTC 362
BSNT_00610___ 366 TGACAACCGCGGAGCAGGCTCTTGGGTCGGGC-ATCAGCTTACCGATTAC 414
|||.|||||.||||||||.|||||||| |||| |||||.|.|.||||||.
BL01820___nuc 363 TGATAACCGTGGAGCAGGATCTTGGGT-GGGCAATCAGGTAAGCGATTAT 411
BSNT_00610___ 415 CCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA 450
||.|||||.||.||.||..|.||||..|||.|.|||
BL01820___nuc 412 CCGGACGGGACGAAAGTACTTTTCAAGATTAATTAA 447
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