Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00597 and BL01817

See Amino acid alignment / Visit BSNT_00597 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:13
# Commandline: needle
#    -asequence dna-align/BSNT_00597___yckA.1.5803.seq
#    -bsequence dna-align/BL01817___yckA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00597___yckA-BL01817___yckA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00597___yckA-BL01817___yckA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00597___yckA
# 2: BL01817___yckA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 731
# Identity:     484/731 (66.2%)
# Similarity:   484/731 (66.2%)
# Gaps:          97/731 (13.3%)
# Score: 1640.5
# 
#
#=======================================

BSNT_00597___      1 ATGATCAATAG-----CATTCAATGGGAATATATTTTCAA--CACGAAGC     43
                             |.|     .|||||||||||.||||||||.||  || ||   
BL01817___yck      1 --------TTGGGCTCTATTCAATGGGAGTATATTTTTAATGCA-GA---     38

BSNT_00597___     44 TGGTCATTG-------AATCGTTCCCTTATGTCATAAAAGGCATTGGGTA     86
                          ||||       |||||||.||||||||.||..|||||||..||.|
BL01817___yck     39 -----ATTGGCTGCGAAATCGTTTCCTTATGTGATGCAAGGCATATGGAA     83

BSNT_00597___     87 TACACTGCTCATCTCTTTTGTAAGCATGTTTGCAGG---AACTGTGATCG    133
                     |||.||..||||.|||||||..|||||||||||.||   ||   |..|||
BL01817___yck     84 TACGCTTTTCATTTCTTTTGCGAGCATGTTTGCCGGTTTAA---TTCTCG    130

BSNT_00597___    134 GCCTGTTCATATCACTCGCT----AGAATGTCTAAGCTTGCTTTGTTAAG    179
                     |..|.|||||    |.||||    .|.|||||...|||.||||||.|..|
BL01817___yck    131 GTTTTTTCAT----CGCGCTTGGGCGCATGTCCGGGCTCGCTTTGCTTCG    176

BSNT_00597___    180 ATGGCCGGC--GAAGCTCTATATCTCATTTATGCGGGGCGTTCCGATTTT    227
                     .||||||||  |||  ||||||||||.||||||.|.|||||||||||..|
BL01817___yck    177 TTGGCCGGCAAGAA--TCTATATCTCGTTTATGAGAGGCGTTCCGATCCT    224

BSNT_00597___    228 AGTGATTTTGTTTATCCTTTATTTCGGGTTTCCTTATATCAGCATTCAAT    277
                     .||.||..|.|||||||||||||||||.||||||||||||.|.||.||||
BL01817___yck    225 TGTCATACTATTTATCCTTTATTTCGGTTTTCCTTATATCGGAATCCAAT    274

BSNT_00597___    278 TTTCCGCTGTCACGGCTGCTTTAATCGGTTTTAGCCTTAACAGCGCCGCC    327
                     ||.|.|||.|..|.|||||.||||||||.||.|||.|.|||||||||||.
BL01817___yck    275 TTACGGCTTTGGCTGCTGCCTTAATCGGCTTCAGCATCAACAGCGCCGCA    324

BSNT_00597___    328 TACATTGCGGAAATTAACCGTTCAGCCATTTCATCCGTCGAAAAAGGACA    377
                     ||||||||.||.||||.|||.||.|||.|.||.|||||.||.|.|||.||
BL01817___yck    325 TACATTGCCGAGATTATCCGCTCGGCCCTGTCGTCCGTTGACAGAGGGCA    374

BSNT_00597___    378 GTGGGAAGCCGCATCCTCGCTGGGTCTTTCCTATTGGCAGACGATGAGGG    427
                     ||||||.||.|||...|||.|.||..|.|||||.||||||||||||.|..
BL01817___yck    375 GTGGGACGCTGCAAAATCGGTCGGATTCTCCTACTGGCAGACGATGCGCC    424

BSNT_00597___    428 GCATCATTTTGCCGCAATCGATACATATTGCGCTGCCTCCGCTTGCCAAT    477
                     .|.|.|||.|.||.||||||.|....||||||||.||.||.|||||.||.
BL01817___yck    425 ACGTGATTGTCCCTCAATCGGTTAGGATTGCGCTCCCGCCTCTTGCGAAC    474

BSNT_00597___    478 GTATTGCTCGACTTAATCAAGGCGTCCTCTCTCGCTGCGATGATTACAGT    527
                     ||..||||.||..|..|.||.|||||.||.||.||.||.|||||.||.||
BL01817___yck    475 GTGATGCTTGATCTCGTTAAAGCGTCTTCCCTGGCCGCCATGATCACCGT    524

BSNT_00597___    528 GCCGGAATTGCTCCAGCATGCGAAAATCATCGGGGGCAGAGAGTTTGATT    577
                     |||.||||||.|.|||||.||.||||||.||||.||..|.||.||.||.|
BL01817___yck    525 GCCTGAATTGTTTCAGCAGGCAAAAATCGTCGGCGGACGGGAATTCGACT    574

BSNT_00597___    578 ATATGACCATGTATATTCTGACCGCTCTCATTTATTGGGCCATCTGCTC-    626
                     |||||||.|||||.|||.|....||..|.|||||.||||||||.||||| 
BL01817___yck    575 ATATGACGATGTACATTTTAGTTGCCTTGATTTACTGGGCCATTTGCTCG    624

BSNT_00597___    627 -------CATTGCCGCGGTCTTT--------------CAGA-----ATAT    650
                            |.||||..|.|..|||              ||||     ||||
BL01817___yck    625 GGGATCGCTTTGCTCCAGGATTTCCTGGAAAAGCGGACAGAGGTTTATAT    674

BSNT_00597___    651 CCTTGAGAAAAAATACGCTCATTATGTTTAA    681
                     |      ||||||||.               
BL01817___yck    675 C------AAAAAATAA---------------    684


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