Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00597 and BL01817
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:13
# Commandline: needle
# -asequence dna-align/BSNT_00597___yckA.1.5803.seq
# -bsequence dna-align/BL01817___yckA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00597___yckA-BL01817___yckA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00597___yckA-BL01817___yckA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00597___yckA
# 2: BL01817___yckA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 731
# Identity: 484/731 (66.2%)
# Similarity: 484/731 (66.2%)
# Gaps: 97/731 (13.3%)
# Score: 1640.5
#
#
#=======================================
BSNT_00597___ 1 ATGATCAATAG-----CATTCAATGGGAATATATTTTCAA--CACGAAGC 43
|.| .|||||||||||.||||||||.|| || ||
BL01817___yck 1 --------TTGGGCTCTATTCAATGGGAGTATATTTTTAATGCA-GA--- 38
BSNT_00597___ 44 TGGTCATTG-------AATCGTTCCCTTATGTCATAAAAGGCATTGGGTA 86
|||| |||||||.||||||||.||..|||||||..||.|
BL01817___yck 39 -----ATTGGCTGCGAAATCGTTTCCTTATGTGATGCAAGGCATATGGAA 83
BSNT_00597___ 87 TACACTGCTCATCTCTTTTGTAAGCATGTTTGCAGG---AACTGTGATCG 133
|||.||..||||.|||||||..|||||||||||.|| || |..|||
BL01817___yck 84 TACGCTTTTCATTTCTTTTGCGAGCATGTTTGCCGGTTTAA---TTCTCG 130
BSNT_00597___ 134 GCCTGTTCATATCACTCGCT----AGAATGTCTAAGCTTGCTTTGTTAAG 179
|..|.||||| |.|||| .|.|||||...|||.||||||.|..|
BL01817___yck 131 GTTTTTTCAT----CGCGCTTGGGCGCATGTCCGGGCTCGCTTTGCTTCG 176
BSNT_00597___ 180 ATGGCCGGC--GAAGCTCTATATCTCATTTATGCGGGGCGTTCCGATTTT 227
.|||||||| ||| ||||||||||.||||||.|.|||||||||||..|
BL01817___yck 177 TTGGCCGGCAAGAA--TCTATATCTCGTTTATGAGAGGCGTTCCGATCCT 224
BSNT_00597___ 228 AGTGATTTTGTTTATCCTTTATTTCGGGTTTCCTTATATCAGCATTCAAT 277
.||.||..|.|||||||||||||||||.||||||||||||.|.||.||||
BL01817___yck 225 TGTCATACTATTTATCCTTTATTTCGGTTTTCCTTATATCGGAATCCAAT 274
BSNT_00597___ 278 TTTCCGCTGTCACGGCTGCTTTAATCGGTTTTAGCCTTAACAGCGCCGCC 327
||.|.|||.|..|.|||||.||||||||.||.|||.|.|||||||||||.
BL01817___yck 275 TTACGGCTTTGGCTGCTGCCTTAATCGGCTTCAGCATCAACAGCGCCGCA 324
BSNT_00597___ 328 TACATTGCGGAAATTAACCGTTCAGCCATTTCATCCGTCGAAAAAGGACA 377
||||||||.||.||||.|||.||.|||.|.||.|||||.||.|.|||.||
BL01817___yck 325 TACATTGCCGAGATTATCCGCTCGGCCCTGTCGTCCGTTGACAGAGGGCA 374
BSNT_00597___ 378 GTGGGAAGCCGCATCCTCGCTGGGTCTTTCCTATTGGCAGACGATGAGGG 427
||||||.||.|||...|||.|.||..|.|||||.||||||||||||.|..
BL01817___yck 375 GTGGGACGCTGCAAAATCGGTCGGATTCTCCTACTGGCAGACGATGCGCC 424
BSNT_00597___ 428 GCATCATTTTGCCGCAATCGATACATATTGCGCTGCCTCCGCTTGCCAAT 477
.|.|.|||.|.||.||||||.|....||||||||.||.||.|||||.||.
BL01817___yck 425 ACGTGATTGTCCCTCAATCGGTTAGGATTGCGCTCCCGCCTCTTGCGAAC 474
BSNT_00597___ 478 GTATTGCTCGACTTAATCAAGGCGTCCTCTCTCGCTGCGATGATTACAGT 527
||..||||.||..|..|.||.|||||.||.||.||.||.|||||.||.||
BL01817___yck 475 GTGATGCTTGATCTCGTTAAAGCGTCTTCCCTGGCCGCCATGATCACCGT 524
BSNT_00597___ 528 GCCGGAATTGCTCCAGCATGCGAAAATCATCGGGGGCAGAGAGTTTGATT 577
|||.||||||.|.|||||.||.||||||.||||.||..|.||.||.||.|
BL01817___yck 525 GCCTGAATTGTTTCAGCAGGCAAAAATCGTCGGCGGACGGGAATTCGACT 574
BSNT_00597___ 578 ATATGACCATGTATATTCTGACCGCTCTCATTTATTGGGCCATCTGCTC- 626
|||||||.|||||.|||.|....||..|.|||||.||||||||.|||||
BL01817___yck 575 ATATGACGATGTACATTTTAGTTGCCTTGATTTACTGGGCCATTTGCTCG 624
BSNT_00597___ 627 -------CATTGCCGCGGTCTTT--------------CAGA-----ATAT 650
|.||||..|.|..||| |||| ||||
BL01817___yck 625 GGGATCGCTTTGCTCCAGGATTTCCTGGAAAAGCGGACAGAGGTTTATAT 674
BSNT_00597___ 651 CCTTGAGAAAAAATACGCTCATTATGTTTAA 681
| ||||||||.
BL01817___yck 675 C------AAAAAATAA--------------- 684
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