Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00574 and BL01815

See Amino acid alignment / Visit BSNT_00574 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:11
# Commandline: needle
#    -asequence dna-align/BSNT_00574___ycgR.1.5803.seq
#    -bsequence dna-align/BL01815___ycgR.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00574___ycgR-BL01815___ycgR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00574___ycgR-BL01815___ycgR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00574___ycgR
# 2: BL01815___ycgR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 913
# Identity:     676/913 (74.0%)
# Similarity:   676/913 (74.0%)
# Gaps:          35/913 ( 3.8%)
# Score: 2497.0
# 
#
#=======================================

BSNT_00574___      1 ATGAGCGGAGGTTTTATTGTGACAGCACAATCATCTTTTCTTCAGCTGAA     50
                                       |||.|..||||   |||.|||||.||||||||
BL01815___ycg      1 ------------------GTGGCTTCACA---ATCCTTTCTGCAGCTGAA     29

BSNT_00574___     51 TTCTATTTTTATCAGCATTTTAATAGAAGCCATTCCGTTTATTCTGATTG    100
                     .||.||.||||||||.||.|||||||||||.||||||||..|..||||.|
BL01815___ycg     30 CTCAATATTTATCAGTATATTAATAGAAGCGATTCCGTTCGTCTTGATCG     79

BSNT_00574___    101 GCGTCATACTTTCCGGAATCATTCAAATGTTTGTTTCTGAAGAAATGATT    150
                     |.||..|..|.||.||..|.||||||||||||||..|.||.||.|||||.
BL01815___ycg     80 GGGTTTTTATATCAGGTTTGATTCAAATGTTTGTGACGGAGGAGATGATG    129

BSNT_00574___    151 GCAAGAATCATGCCGAAAAACCGTTTTCTCGCCGTTTTATTCGGTGCGCT    200
                     ||.|.||||||.|||||||||||.||||||||||||||.|..||..|..|
BL01815___ycg    130 GCGAAAATCATTCCGAAAAACCGATTTCTCGCCGTTTTGTCAGGAACATT    179

BSNT_00574___    201 GGCCGGCGTTTTATTTCCCGCCTGCGAATGCGGCATCATCCCGATTACGA    250
                     .|||||.||.||.|||||.||.|||||.|||||||||.|.||||||.|..
BL01815___ycg    180 TGCCGGGGTATTGTTTCCGGCTTGCGAGTGCGGCATCGTTCCGATTGCCC    229

BSNT_00574___    251 GGCGGCTTCTGTTAAAGGGAGTTCCTCTGCATGCGGGCGTTGCTTTCATG    300
                     |..||||.||.|||||||||||.||.||.|||||||..||.||.||||||
BL01815___ycg    230 GCAGGCTGCTTTTAAAGGGAGTGCCGCTTCATGCGGCGGTCGCCTTCATG    279

BSNT_00574___    301 CTGACCGCGCCTATCATTAATCCTATCGTTTTATTTTCTACTTATATTGC    350
                     |||||.||.||.|||||.|||||.||.||.|||||.||.||.|..||.||
BL01815___ycg    280 CTGACGGCCCCGATCATCAATCCGATTGTATTATTCTCGACATTCATCGC    329

BSNT_00574___    351 GTTCGGGAATAGATGGAGCGTGGTCTTTTACAGAGGCGGACTGGCTCTCG    400
                     .|||||.||.|.||||...||.||.||.|||.|.|||||..||||..|.|
BL01815___ycg    330 TTTCGGAAACAAATGGGATGTCGTGTTCTACCGGGGCGGGTTGGCGATTG    379

BSNT_00574___    401 CCGTTTCGCTGATCATCGGGGTCATCTTATCCTATCAATTTAAAGATAAC    450
                     |.||.||.||.||...||||.|.|||.|.||.|||||||||||||..||.
BL01815___ycg    380 CGGTGTCTCTCATTGCCGGGCTGATCATCTCTTATCAATTTAAAGGGAAT    429

BSNT_00574___    451 CAGCT--TTTAAAGCCTGATGAACCCGGGCACCACCATCAT---CATCAC    495
                     |||||  |..|||.|..||.|  |.|||.||.|||||.|||   |||.|.
BL01815___ycg    430 CAGCTGATCGAAAACGGGACG--CACGGACATCACCACCATGTCCATGAG    477

BSNT_00574___    496 GGC---ACCTTGCTCCAAAAACTGGGCGGGACCTTGCGGCATGCCATTGA    542
                     .||   .|.||.||.|||||.||.||||||||..|.||.|||||..||||
BL01815___ycg    478 AGCCAGTCTTTCCTGCAAAAGCTCGGCGGGACGCTCCGCCATGCAGTTGA    527

BSNT_00574___    543 TGAATTTTTCTCCGTGGGGAAATATTTAATCATCGGCGCCTTTATCGCAG    592
                     .||.||||||||.||.||.||||||||.|||||||||||.|||.||||||
BL01815___ycg    528 CGAGTTTTTCTCAGTCGGAAAATATTTGATCATCGGCGCATTTGTCGCAG    577

BSNT_00574___    593 CCGCTATGCAGACGTATGTCAAAACATCCACTCTGCTTGCGATCGGGCAG    642
                     |.||.||||||||||||.|.||||||||.|||||..|.||||||||||||
BL01815___ycg    578 CAGCGATGCAGACGTATATTAAAACATCGACTCTTTTGGCGATCGGGCAG    627

BSNT_00574___    643 AATGATGTATCCTCTTCCCTCGTGATGATGGGTCTGGCGTTTGTCCTGTC    692
                     |||||||||||.||.||||||||.||||||||.|||.|.|||||.|||||
BL01815___ycg    628 AATGATGTATCTTCCTCCCTCGTTATGATGGGGCTGTCATTTGTGCTGTC    677

BSNT_00574___    693 GCTTTGTTCAGAAGTTGATGCGTTCATCGCGTCTTCCTTCAGCAGCACAT    742
                     .|||||||||||.||.||.||.||.|||||.|||||.||||||||.||.|
BL01815___ycg    678 CCTTTGTTCAGAGGTCGACGCTTTTATCGCTTCTTCTTTCAGCAGTACGT    727

BSNT_00574___    743 TTTCATTAGGATCGTTAATCGCCTTTCTCGTCTTTGGCGCAATGGTGGAT    792
                     ||||..|.||.||..|.||||||||||||||.||.||.||.||||||||.
BL01815___ycg    728 TTTCCCTCGGCTCCCTCATCGCCTTTCTCGTATTCGGAGCGATGGTGGAC    777

BSNT_00574___    793 ATTAAGAATCTATTGATGATGCTTGCGGC--CTTCAAAAAACGATTTGTT    840
                     ||.||.|||||..||||||||||  ||||  |||||||||.||.|||||.
BL01815___ycg    778 ATCAAAAATCTGCTGATGATGCT--CGGCATCTTCAAAAAGCGCTTTGTG    825

BSNT_00574___    841 TTCCTGCTGATTACCTACATTGTCGTGATTGTTTTAGCGGGATCACTACT    890
                     ||..|..|.||..|||||||.|.|||.|||||.|||||.||||||||..|
BL01815___ycg    826 TTTGTCTTAATCCCCTACATCGCCGTTATTGTCTTAGCCGGATCACTGTT    875

BSNT_00574___    891 GGTAAAGGGGTGA    903
                     |||||||||||||
BL01815___ycg    876 GGTAAAGGGGTGA    888


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00574 and BL01815

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
