Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00573 and BL01814

See Amino acid alignment / Visit BSNT_00573 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:11
# Commandline: needle
#    -asequence dna-align/BSNT_00573___ycgQ.1.5803.seq
#    -bsequence dna-align/BL01814___ycgQ.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00573___ycgQ-BL01814___ycgQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00573___ycgQ-BL01814___ycgQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00573___ycgQ
# 2: BL01814___ycgQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 888
# Identity:     607/888 (68.4%)
# Similarity:   607/888 (68.4%)
# Gaps:          72/888 ( 8.1%)
# Score: 1868.5
# 
#
#=======================================

BSNT_00573___      1 ATGTTTCGTCTATTGGTGCTGATGGGATTTACGTTTTTCTTTTATCATCT     50
                     ||||||||...|||..|..|.|||...||||||||||||||||.||||||
BL01814___ycg      1 ATGTTTCGCACATTCATTTTAATGTTGTTTACGTTTTTCTTTTTTCATCT     50

BSNT_00573___     51 GCATGCCTCAGGAAATCTAACAAAATATATCAATATGAAATATGCCTATC    100
                     .|||||.||.||.|||||.|||||||||||.|||||||||||.||.||.|
BL01814___ycg     51 TCATGCATCCGGCAATCTGACAAAATATATTAATATGAAATACGCTTACC    100

BSNT_00573___    101 TTTCCTTTATTGCGATCTTCCTGCTGGCCATTCTGACCGCCGTCCAAGCA    150
                     ||||.|..||.||.||..|.||.|||||||||.||||.||.||    |||
BL01814___ycg    101 TTTCATACATCGCTATTATTCTTCTGGCCATTTTGACAGCTGT----GCA    146

BSNT_00573___    151 TATCT--ATTTAT----CAAG-TCGCCTGAAAAAAGCGGTCATCACCATG    193
                     ..|||  ||||||    .||| |||..|||||||.|           |||
BL01814___ycg    147 ATTCTACATTTATATGAAAAGCTCGGATGAAAAAGG-----------ATG    185

BSNT_00573___    194 --ACCATGATTGCGGGTGCAGCCATGATCACGAGCATGACCATGAACAAA    241
                       |||||||.|||||.|||.|||||||.|||      ||.||||||.||.
BL01814___ycg    186 TAACCATGAATGCGGATGCGGCCATGACCAC------GATCATGAAAAAG    229

BSNT_00573___    242 ACAAGCCATTTTAT-CAGCGTTAT-TTGATTTATGT--TGTTTTTCTTTT    287
                     |.||||| ||||.| ||..| .|| ||.||||||.|  ||||.|||  ||
BL01814___ycg    230 ATAAGCC-TTTTCTGCAAAG-AATGTTCATTTATTTCGTGTTCTTC--TT    275

BSNT_00573___    288 TCCTTTGGTGTCAGGCA----TCTTCTTC--CCGATTGCAACGCTTGACT    331
                     .|||||      |.|||    .|||.|||  |||...||.||||||||.|
BL01814___ycg    276 CCCTTT------ATGCACCGGACTTTTTCTGCCGGCAGCGACGCTTGATT    319

BSNT_00573___    332 C--ATCCATAGTCAAAACAAAAGGGTTCTCGTTTAAGGCGAT-GGAGAG-    377
                     |  ||  ||.|||||..|.||.||.||||||||.||.||||| |.|.|| 
BL01814___ycg    320 CCAAT--ATCGTCAAGTCGAAGGGCTTCTCGTTCAAAGCGATCGAACAGC    367

BSNT_00573___    378 CGGAGATCACTACTCCCAAACACAGTATTTGCGGCCTGATGCCAGCCTTT    427
                     |||||  ||.||..|||||||.|||||..||||.||.||..|.|||.|.|
BL01814___ycg    368 CGGAG--CATTATGCCCAAACCCAGTACCTGCGCCCCGACACAAGCATCT    415

BSNT_00573___    428 ATTACGCGCAAGACAGCTATGACAAACAAATGAA-ACAGCTGTTTAATAA    476
                     |.||||..||.||..|.|||||..||...||||| |.||| |.|.||.||
BL01814___ycg    416 ACTACGGCCAGGATGGGTATGATGAATTGATGAATAAAGC-GCTGAAAAA    464

BSNT_00573___    477 GTATTCCAGCAAAAAAG-AGATTTCTCTGACCGATGACGATTTCCTAAAA    525
                     ||| |..||.||||.|| |.|||.|..|.|..|||||.|||||..|.||.
BL01814___ycg    465 GTA-TAAAGAAAAACAGCATATTACATTAAAAGATGATGATTTTTTGAAG    513

BSNT_00573___    526 GGAATGGAAACCATCTATAACTATCCGGGTGAATTTCTCGGACGGACGAT    575
                     ||.||||||||.||||||.|.||||||||.|||||.||.|..||.|||.|
BL01814___ycg    514 GGCATGGAAACGATCTATCATTATCCGGGAGAATTCCTTGACCGAACGCT    563

BSNT_00573___    576 AGAATTTCATGGATTTGCTTACAAAGGAAACGCAAT---TAACAAAAATC    622
                     .|||||..|.||.|||||||..|||||..|.||.||   |.|||||   |
BL01814___ycg    564 CGAATTCGACGGCTTTGCTTTTAAAGGGGAAGCGATCAGTGACAAA---C    610

BSNT_00573___    623 AGCTGTTCGTATTAAGGTTTGGCATCATTCACTGTATCGCTGATTCCGGC    672
                     |||||||.||..|..|.||.|||||||||||.||.|||||.||.||||||
BL01814___ycg    611 AGCTGTTTGTCCTCCGCTTCGGCATCATTCATTGCATCGCCGACTCCGGC    660

BSNT_00573___    673 GTGTACGGGATGCTTGTGGAATTTCC-GAAGGACATGGACATCAAGGATG    721
                     ||.||.||.|||||.||.||.||.|| ||| .|.|||||.||.||.||.|
BL01814___ycg    661 GTCTATGGCATGCTGGTCGAGTTCCCTGAA-AATATGGATATTAAAGACG    709

BSNT_00573___    722 ATGAATGGATTCACATTAAGGGCACTCTGGCCTCAGAATATTACCAGCCA    771
                     |..|.|||.||||..|.||.||.||.|||.|.||.|||||.||.|||||.
BL01814___ycg    710 ACCAGTGGCTTCATGTAAAAGGAACGCTGTCTTCCGAATACTATCAGCCT    759

BSNT_00573___    772 TTCAAGTCAACTCTCCCTGTCGTCAAAGTAACTGACTGGAATACCATTAA    821
                     |||||.||.||..|.||.||..|.|||||.|..||.|||..|.|.||.||
BL01814___ycg    760 TTCAAATCTACAATTCCCGTGCTGAAAGTGAAGGATTGGTCTGCAATAAA    809

BSNT_00573___    822 AAAACCTGATGATCCGTATGTTTA-CAGAGGATTTTAA    858
                     |.|.||..|.|||||.||.||||| |.|| .||.||||
BL01814___ycg    810 AGAGCCGAAAGATCCTTACGTTTATCGGA-CATATTAA    846


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00573 and BL01814

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
