Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00404 and BL01804
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:03
# Commandline: needle
# -asequence dna-align/BSNT_00404___mpr.1.5803.seq
# -bsequence dna-align/BL01804___blaSE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00404___mpr-BL01804___blaSE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00404___mpr-BL01804___blaSE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00404___mpr
# 2: BL01804___blaSE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1091
# Identity: 593/1091 (54.4%)
# Similarity: 593/1091 (54.4%)
# Gaps: 289/1091 (26.5%)
# Score: 1338.5
#
#
#=======================================
BSNT_00404___ 1 ATGAAATTAGTTCCAAGA---TTCAGAAAACAATGGTTCGCTTACTTAAC 47
.|| .|||||...|||| || ||||.| ||||.|.|.|| .
BL01804___bla 1 TTG--GTTAGTAAAAAGAGTGTT----AAACGA-GGTTTGATCAC----A 39
BSNT_00404___ 48 GGT----TTTGTGTTTGGCTTTGGCAGCAGCGGTTTCTTTTGGCGTA--- 90
||| ||.||.|||...||| .||||||.| |||
BL01804___bla 40 GGTCTCATTGGTATTTCTATTT-----------ATTCTTTAG--GTATGC 76
BSNT_00404___ 91 --CCGGCAAAAGCGGCAGAGAAC-CCGCAAACTTCTGTATCGAATACCGG 137
|||||..||||.|| |..|.| ||.||.|||.||||.||
BL01804___bla 77 ACCCGGCCCAAGCCGC-GCCATCGCCTCATACTCCTGTTTC--------- 116
BSNT_00404___ 138 TAAAGAAGGTGATGCTACGAAAAACCAAACGTCA---AAAGCAG-AACA- 182
|.|.|||.|| ||| |||||.| ||||
BL01804___bla 117 ------AAGCGATCCT---------------TCATACAAAGCGGAAACAT 145
BSNT_00404___ 183 -GGT---TTCTGCCCC-----TTATGAGGG---AAT-CGGAAAAACAAGT 219
||| ||.||.||| |||.|||.| ||| ||| |..||
BL01804___bla 146 CGGTTACTTATGACCCAAACATTAAGAGCGATCAATACGG-----CTTGT 190
BSNT_00404___ 220 -----AAATCGTTATACGG----CGGC-------------CAAACGGAAC 247
|||.|||| |||.| |||| ||||.|.||.
BL01804___bla 191 ATTCAAAAGCGTT-TACAGGCACCGGCAAAGTGAATGAAACAAAGGAAAA 239
BSNT_00404___ 248 TGGAGAAAAACATTCAAACTTTACAG--CCTTCGAGCATT---------A 286
.|..||||||.|.|||..|...|.|| ||||..|||||| |
BL01804___bla 240 AGCGGAAAAAAAGTCACCCGCCAAAGCTCCTTACAGCATTAAATCGGTGA 289
BSNT_00404___ 287 TCGGAACTGATGAACGCACCAGAATCTCCAGCACGACATCTTTTCCATAT 336
|.||..|||||||.||.||.||..||.|||.|||.||..|.|.|||.||.
BL01804___bla 290 TTGGTTCTGATGATCGGACAAGGGTCACCAACACAACCGCATATCCGTAC 339
BSNT_00404___ 337 AGAGCAACCGTTCAACTGTCAATCAAGTATCCCAACACTTCAAGCA-CTT 385
|||||.|.|||||| ||| |||||||| |
BL01804___bla 340 AGAGCGATCGTTCA-------------TAT--------TTCAAGCAGC-- 366
BSNT_00404___ 386 ATGG----ATGTACCGGATTTTTAATCAATCCAAATACAGTCGTCACGGC 431
||.| |||.|||||||...|.|||..|||.||.||.||||..||.||
BL01804___bla 367 ATCGGTTCATGCACCGGATGGATGATCGGTCCGAAAACCGTCGCAACAGC 416
BSNT_00404___ 432 TGGACATTGTGTGT-----ACAGCCA--GGATCATGGATGGGCTTCGACG 474
.|||||.||..|.| |||.|.| ||.||| ||.|.||
BL01804___bla 417 CGGACACTGCATCTATGACACATCAAGCGGTTCA---------TTTGCCG 457
BSNT_00404___ 475 ATAACCGCC------GCGCCGGGCCGCAATGGCTCGTCA---TATCCGTA 515
.| ||.||| .|||||||.||.||.|| |.|| |||||.||
BL01804___bla 458 GT-ACAGCCACTGTTTCGCCGGGACGGAACGG---GACAAGCTATCCTTA 503
BSNT_00404___ 516 CGGTACTTATTCA----GGCACGATGTTTTACTCCGTCAAAGGATGGA-- 559
||| ||.|.|.| |.|.||.|..||||.|||||| ||||||||
BL01804___bla 504 CGG--CTCAGTTAAATCGACGCGCTACTTTATTCCGTC--AGGATGGAGA 549
BSNT_00404___ 560 --CGGAAAGCAAAGACACCAATTATGATTACGGAGCTATTAAATTA---- 603
||||| ||||||||||.||||||||.||.||..||.||
BL01804___bla 550 AGCGGAA-------ACACCAATTACGATTACGGCGCAATCGAACTAAGCG 592
BSNT_00404___ 604 AACGGTTCTCCTGGAAACACGGTTGGCTGGTACGGCTAC-CGGACTACA- 651
|||.|.|| ||.||.||.||.||.|..|.|||.||| || ||||
BL01804___bla 593 AACCGATC----GGCAATACTGTCGGATACTTCGGATACTCG---TACAC 635
BSNT_00404___ 652 AACAGCAGCA---GTCCCGTGGGCC-----TTTCCTCGTCAGTGACAGGA 693
.||..||.|| || ||||.| ||.| |.|||| .||.
BL01804___bla 636 TACTTCATCACTTGT----TGGGACAACTGTTAC--CATCAG----CGGC 675
BSNT_00404___ 694 TTCCCGTGTGACAAAACCTTTGGCACGATGTGGTCTG-ATACAAAGCCGA 742
|.|||..|.||.|||||....|||||....||| |.| ||.||...||||
BL01804___bla 676 TACCCAGGCGATAAAACAGCAGGCACACAATGG-CAGCATTCAGGACCGA 724
BSNT_00404___ 743 TTCG----CTCCGCTGAAACGTATAAGCTGACCTATACAACCGATACGTA 788
|| | |||| |||||||||||..||...||..|||..||.|||||
BL01804___bla 725 TT-GCCATCTCC---GAAACGTATAAATTGCAGTACGCAATGGACACGTA 770
BSNT_00404___ 789 CGGCTGCCAAAGCGGCTCGCCTGTTTATCGA------------------- 819
|||..|.||||||||.||.||.||.| ||||
BL01804___bla 771 CGGAGGACAAAGCGGTTCACCGGTAT-TCGAACAAAGCAGCTCCAGAACG 819
BSNT_00404___ 820 AACTACAGTGATACAGGGCAGACAGCTATTGCCATTCACACGA------- 862
||||.|||.|.| |.|.|| .|..|||||.|.|||||.|
BL01804___bla 820 AACTGCAGCGGT-CCGTGC-----TCGCTTGCCGTACACACAAATGGAGT 863
BSNT_00404___ 863 --ACGGAGGATCGTCATATAACTTGGGAACAAGGGTGACGAACGATGTAT 910
||||.||.||.||.||.|||...||.||..||.|.||.||.||.||.|
BL01804___bla 864 ATACGGCGGCTCCTCGTACAACAGAGGCACCCGGATTACAAAAGAGGTGT 913
BSNT_00404___ 911 TCAACAATATT---CAATATTGGGCAAA------TCAATAA 942
||.||||| || || |.|||..||| .||||||
BL01804___bla 914 TCGACAAT-TTGACCA--ACTGGAAAAACAGCGCACAATAA 951
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