Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04188 and BL01799
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:16
# Commandline: needle
# -asequence dna-align/BSNT_04188___ysfC.1.5803.seq
# -bsequence dna-align/BL01799___ysfC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04188___ysfC-BL01799___ysfC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04188___ysfC-BL01799___ysfC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04188___ysfC
# 2: BL01799___ysfC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1461
# Identity: 1025/1461 (70.2%)
# Similarity: 1025/1461 (70.2%)
# Gaps: 96/1461 ( 6.6%)
# Score: 3498.5
#
#
#=======================================
BSNT_04188___ 1 ATGA-----TCACCAAG---GATGTAAAGGAGCAGCTGAT--------TC 34
|||| ||| |||| |||..| ||||||| ||
BL01799___ysf 1 ATGATTTCCTCA-CAAGTGAGATCCA-------AGCTGATTGAGATTGTC 42
BSNT_04188___ 35 GGGTCT-CCGGACCAGAAAACTTTGATGACTCGAATGCCGGCCGTCTCGT 83
||.||| || ||.|.|||.||.|||||.|||||.||.|||||
BL01799___ysf 43 GGCTCTGCC---------AATTATGACGATTCGAACGCCGGACGGCTCGT 83
BSNT_04188___ 84 CTATTCATATGATGCGACGCCTCAGTATCAGTCTATGCCTGATGCCGTGA 133
||||||.|||||||||||.||.||||.|||.||.||||||||.||.||.|
BL01799___ysf 84 CTATTCCTATGATGCGACACCACAGTTTCAATCGATGCCTGACGCGGTCA 133
BSNT_04188___ 134 TTGCTCCGAGGAATACTGAAGAAGTATCACGCATTTTAACAATTTGCAGC 183
||||.|||.|.|..|..|||||||||||.||.||..|.|.|||.||||.|
BL01799___ysf 134 TTGCCCCGCGCAGCAAGGAAGAAGTATCGCGAATCGTGAAAATCTGCAAC 183
BSNT_04188___ 184 GAACATCGAGTGCCGATCGTTCCAAGAGGATCAGGGACAAACCTGTGCGG 233
...||.||..|.|||||.||.||.|||||.|||||.||||||||.||.|.
BL01799___ysf 184 ACGCACCGCATTCCGATTGTGCCGAGAGGTTCAGGTACAAACCTATGTGC 233
BSNT_04188___ 234 CGGCACGTGCCCGACTGAAGGCGGACTTGTGCTTCTCTTTAAGCACATGA 283
||||||.||||||||||||||.||..||||.||.||.||||||||.||||
BL01799___ysf 234 CGGCACATGCCCGACTGAAGGGGGGATTGTCCTCCTGTTTAAGCATATGA 283
BSNT_04188___ 284 ACCAGATTCTTGAGATTGATGAAGAAAATTTAACTGCCACAGTTCAGCCG 333
|.||.|||.|.||.||.|||||||||||||||||....||.||.|||||.
BL01799___ysf 284 ATCAAATTTTAGAAATCGATGAAGAAAATTTAACGATAACCGTCCAGCCC 333
BSNT_04188___ 334 GGCGTCATTACGTTGGATATGATCCGGGCAGTTGAAAGCAAAGGTTTATT 383
||.||.||.||..|.||..|.||.|..||.|.||||...|||||.|||||
BL01799___ysf 334 GGTGTGATCACACTTGACTTAATTCACGCCGCTGAAGAAAAAGGATTATT 383
BSNT_04188___ 384 TTATCCGCCTGACCCGAGTTCTATGAAAATATCAACTATCGGGGGCAACA 433
|||||||||.||.|||||.||.|||||.||.||.||.|||||.||.||.|
BL01799___ysf 384 TTATCCGCCCGATCCGAGCTCAATGAAGATCTCGACAATCGGCGGGAATA 433
BSNT_04188___ 434 TCAATGAAAATTCCGGCGGGCTCCGCGGATTAAAATACGGCGTCACCCGC 483
|.||.|||||.||.|||||.||||||||.||.||||||||.||.||||||
BL01799___ysf 434 TTAACGAAAACTCAGGCGGCCTCCGCGGCTTGAAATACGGAGTGACCCGC 483
BSNT_04188___ 484 GACTATGTTATTGGACTGGAGGTTGTGCTCGCAAATGGTGACATCATCCG 533
||.|||||.||.|..|||||..|.||.||.|||||.||.|||||||||||
BL01799___ysf 484 GATTATGTCATGGCGCTGGAAATCGTTCTTGCAAACGGGGACATCATCCG 533
BSNT_04188___ 534 CACCGGCGGAAAACTCGCAAAGGATGTGGCCGGATACGACCTCACACGTC 583
|||||||||.||.||.||.||.|||||.|||||.||.||..|.||.||||
BL01799___ysf 534 CACCGGCGGCAAGCTGGCCAAAGATGTTGCCGGCTATGATTTGACGCGTC 583
BSNT_04188___ 584 TTTTTGTCGGCTCAGAAGGAACACTCGGCATTGTGACAGAGGCAATCGTC 633
|.||.|||||.||.||||||||.||||||.|..|.||.||.||||...|.
BL01799___ysf 584 TGTTCGTCGGTTCTGAAGGAACGCTCGGCGTCATCACTGAAGCAACATTA 633
BSNT_04188___ 634 AAGCTCGTTCCAAAGCCTGAAACAAAAAAGACGCTGCTTGCCCTATATGA 683
||.|||.|.||....||.|||||||||||.||..|.||.||.||.|||.|
BL01799___ysf 634 AAACTCATCCCGGCACCCGAAACAAAAAAAACCGTCCTCGCTCTCTATCA 683
BSNT_04188___ 684 AAACATCGATGCCGCTGCTCAAACGGTATCAGACATCATTGCCGCA-AAA 732
|.|.|||||..|.||.||.|||||.||.|||.|.||||||| |.|| |||
BL01799___ysf 684 AGATATCGACTCTGCAGCACAAACTGTTTCAAATATCATTG-CACATAAA 732
BSNT_04188___ 733 ATCATACCCGCCACGCTTGAATTTCTCGACCAGCCTACACTTTTGGTGAT 782
|||||.||..|.||.||.||||||||||||||.|||||..||..||||||
BL01799___ysf 733 ATCATTCCGACGACACTCGAATTTCTCGACCAACCTACGATTCAGGTGAT 782
BSNT_04188___ 783 TGAGGATTATGCCAAAATCGGACTGCCAACAAACG-------CAAAGGCG 825
.||.||.|..||.||||||||.||.|| || |||| |||
BL01799___ysf 783 CGAAGACTTCGCGAAAATCGGCCTTCC------CGTCCATGCCAAA-GCG 825
BSNT_04188___ 826 GTTCTATTAATTGAGCAAGACGG-ACCGCTTGAA-ATCGTGGCA------ 867
|||||..|.||.||.||.||||| ||| ||| || |||
BL01799___ysf 826 GTTCTCCTGATCGAACAGGACGGCACC----GAAGAT----GCAGTTCGC 867
BSNT_04188___ 868 CGGGATATGGAAAAGATTGAGGCCATTTGCAAAAAAGGCGACGCCGTTTC 917
||.|||||.|....||||||.|..||||||||||||||..|.||.||.||
BL01799___ysf 868 CGTGATATCGCCGTGATTGAAGAGATTTGCAAAAAAGGAAATGCTGTGTC 917
BSNT_04188___ 918 CGTTCAGACCGCACAAACAGAGGAGGAGGC-------ATTCGCCCTGACT 960
||||||.||.||.||||||||.|..||.|| .|||| .
BL01799___ysf 918 CGTTCAAACTGCGCAAACAGAAGCTGAAGCGGAAAATCTTCG-------G 960
BSNT_04188___ 961 GAAGCACGGCGCTCTGCACTTTCTGCCCTAGCCCGCCTCAAGCCGACGAC 1010
||.||.||.|||.|.||.|||||.||..||||.||..|.|||||||||||
BL01799___ysf 961 GAGGCCCGCCGCACCGCCCTTTCGGCTTTAGCGCGGTTAAAGCCGACGAC 1010
BSNT_04188___ 1011 GATTTTAGAGGATGCGACCGTTCCTCGCTCAGAAATCGCCAATATGGTTA 1060
.|||.|.||||||||.||.||.||.||.||.|||||.||..|.|||||.|
BL01799___ysf 1011 CATTCTGGAGGATGCTACGGTACCGCGTTCTGAAATTGCTGAAATGGTAA 1060
BSNT_04188___ 1061 AAGCGATTAATGATATTGCTG-------CTAAATATGATATTTCCATCTG 1103
|||||||||||...||.||.| |.||||| ||.||.||
BL01799___ysf 1061 AAGCGATTAATTCGATCGCCGAAAAGCACCAAATA-------TCGATTTG 1103
BSNT_04188___ 1104 CACCTTTGGCCATGCGGGAGACGGGAACCTTCACCCGACATGCACGACAG 1153
.||.||.||.||.||.||.|||||.||||||||.|||||.||.|||||||
BL01799___ysf 1104 TACATTCGGGCACGCAGGCGACGGCAACCTTCATCCGACCTGTACGACAG 1153
BSNT_04188___ 1154 ACATAAGAAATGAG-GATGAAATGGAGCGTGTCGAACAGGCCTTTGCCGA 1202
|..|.||||| .|| ||.||||||.|.||.|||||||||||.||||..||
BL01799___ysf 1154 ATGTCAGAAA-CAGTGAAGAAATGAAACGGGTCGAACAGGCTTTTGAAGA 1202
BSNT_04188___ 1203 GATTTTTGAGAAAGCGATTGAACTTGGCGGGACGATAACCGGAGAGCACG 1252
.||.|||.|.||||||.|||||||.||.||.||.||.||||||||.||.|
BL01799___ysf 1203 CATCTTTAAAAAAGCGGTTGAACTGGGAGGAACAATTACCGGAGAACATG 1252
BSNT_04188___ 1253 GAGTCGGGGCAATGAAAGCGCCTTACTTGGAGATGAAGTTGAAAAAAGAA 1302
|.|||||.|.|||||||||.||.||.|||||..|||||.||...||.|..
BL01799___ysf 1253 GGGTCGGCGAAATGAAAGCCCCCTATTTGGAACTGAAGCTGGGCAATGCG 1302
BSNT_04188___ 1303 GGCATTGATGCGATGAAAGCGTTGAAAGCGGCATTTGACCCCCGGAACAT 1352
||.||.|..||.|||||.|||.|.|||..||||||.||.||....|||||
BL01799___ysf 1303 GGAATCGCCGCCATGAAGGCGGTAAAACAGGCATTGGATCCAAACAACAT 1352
BSNT_04188___ 1353 ATTAAATCCGGGCAAAGTGTTTGCGAAAGATGCCAGAAAACGTGTGGTGG 1402
..|.|||||.||.||..|.|||||||||||..||.|.||.||.|||||||
BL01799___ysf 1353 CATGAATCCCGGGAAGATATTTGCGAAAGACTCCCGCAAGCGAGTGGTGG 1402
BSNT_04188___ 1403 CGGAAAGATGA 1413
.|..|||||||
BL01799___ysf 1403 TGACAAGATGA 1413
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