Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04188 and BL01799

See Amino acid alignment / Visit BSNT_04188 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:16
# Commandline: needle
#    -asequence dna-align/BSNT_04188___ysfC.1.5803.seq
#    -bsequence dna-align/BL01799___ysfC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04188___ysfC-BL01799___ysfC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04188___ysfC-BL01799___ysfC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04188___ysfC
# 2: BL01799___ysfC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1461
# Identity:    1025/1461 (70.2%)
# Similarity:  1025/1461 (70.2%)
# Gaps:          96/1461 ( 6.6%)
# Score: 3498.5
# 
#
#=======================================

BSNT_04188___      1 ATGA-----TCACCAAG---GATGTAAAGGAGCAGCTGAT--------TC     34
                     ||||     ||| ||||   |||..|       |||||||        ||
BL01799___ysf      1 ATGATTTCCTCA-CAAGTGAGATCCA-------AGCTGATTGAGATTGTC     42

BSNT_04188___     35 GGGTCT-CCGGACCAGAAAACTTTGATGACTCGAATGCCGGCCGTCTCGT     83
                     ||.||| ||         ||.|.|||.||.|||||.|||||.||.|||||
BL01799___ysf     43 GGCTCTGCC---------AATTATGACGATTCGAACGCCGGACGGCTCGT     83

BSNT_04188___     84 CTATTCATATGATGCGACGCCTCAGTATCAGTCTATGCCTGATGCCGTGA    133
                     ||||||.|||||||||||.||.||||.|||.||.||||||||.||.||.|
BL01799___ysf     84 CTATTCCTATGATGCGACACCACAGTTTCAATCGATGCCTGACGCGGTCA    133

BSNT_04188___    134 TTGCTCCGAGGAATACTGAAGAAGTATCACGCATTTTAACAATTTGCAGC    183
                     ||||.|||.|.|..|..|||||||||||.||.||..|.|.|||.||||.|
BL01799___ysf    134 TTGCCCCGCGCAGCAAGGAAGAAGTATCGCGAATCGTGAAAATCTGCAAC    183

BSNT_04188___    184 GAACATCGAGTGCCGATCGTTCCAAGAGGATCAGGGACAAACCTGTGCGG    233
                     ...||.||..|.|||||.||.||.|||||.|||||.||||||||.||.|.
BL01799___ysf    184 ACGCACCGCATTCCGATTGTGCCGAGAGGTTCAGGTACAAACCTATGTGC    233

BSNT_04188___    234 CGGCACGTGCCCGACTGAAGGCGGACTTGTGCTTCTCTTTAAGCACATGA    283
                     ||||||.||||||||||||||.||..||||.||.||.||||||||.||||
BL01799___ysf    234 CGGCACATGCCCGACTGAAGGGGGGATTGTCCTCCTGTTTAAGCATATGA    283

BSNT_04188___    284 ACCAGATTCTTGAGATTGATGAAGAAAATTTAACTGCCACAGTTCAGCCG    333
                     |.||.|||.|.||.||.|||||||||||||||||....||.||.|||||.
BL01799___ysf    284 ATCAAATTTTAGAAATCGATGAAGAAAATTTAACGATAACCGTCCAGCCC    333

BSNT_04188___    334 GGCGTCATTACGTTGGATATGATCCGGGCAGTTGAAAGCAAAGGTTTATT    383
                     ||.||.||.||..|.||..|.||.|..||.|.||||...|||||.|||||
BL01799___ysf    334 GGTGTGATCACACTTGACTTAATTCACGCCGCTGAAGAAAAAGGATTATT    383

BSNT_04188___    384 TTATCCGCCTGACCCGAGTTCTATGAAAATATCAACTATCGGGGGCAACA    433
                     |||||||||.||.|||||.||.|||||.||.||.||.|||||.||.||.|
BL01799___ysf    384 TTATCCGCCCGATCCGAGCTCAATGAAGATCTCGACAATCGGCGGGAATA    433

BSNT_04188___    434 TCAATGAAAATTCCGGCGGGCTCCGCGGATTAAAATACGGCGTCACCCGC    483
                     |.||.|||||.||.|||||.||||||||.||.||||||||.||.||||||
BL01799___ysf    434 TTAACGAAAACTCAGGCGGCCTCCGCGGCTTGAAATACGGAGTGACCCGC    483

BSNT_04188___    484 GACTATGTTATTGGACTGGAGGTTGTGCTCGCAAATGGTGACATCATCCG    533
                     ||.|||||.||.|..|||||..|.||.||.|||||.||.|||||||||||
BL01799___ysf    484 GATTATGTCATGGCGCTGGAAATCGTTCTTGCAAACGGGGACATCATCCG    533

BSNT_04188___    534 CACCGGCGGAAAACTCGCAAAGGATGTGGCCGGATACGACCTCACACGTC    583
                     |||||||||.||.||.||.||.|||||.|||||.||.||..|.||.||||
BL01799___ysf    534 CACCGGCGGCAAGCTGGCCAAAGATGTTGCCGGCTATGATTTGACGCGTC    583

BSNT_04188___    584 TTTTTGTCGGCTCAGAAGGAACACTCGGCATTGTGACAGAGGCAATCGTC    633
                     |.||.|||||.||.||||||||.||||||.|..|.||.||.||||...|.
BL01799___ysf    584 TGTTCGTCGGTTCTGAAGGAACGCTCGGCGTCATCACTGAAGCAACATTA    633

BSNT_04188___    634 AAGCTCGTTCCAAAGCCTGAAACAAAAAAGACGCTGCTTGCCCTATATGA    683
                     ||.|||.|.||....||.|||||||||||.||..|.||.||.||.|||.|
BL01799___ysf    634 AAACTCATCCCGGCACCCGAAACAAAAAAAACCGTCCTCGCTCTCTATCA    683

BSNT_04188___    684 AAACATCGATGCCGCTGCTCAAACGGTATCAGACATCATTGCCGCA-AAA    732
                     |.|.|||||..|.||.||.|||||.||.|||.|.||||||| |.|| |||
BL01799___ysf    684 AGATATCGACTCTGCAGCACAAACTGTTTCAAATATCATTG-CACATAAA    732

BSNT_04188___    733 ATCATACCCGCCACGCTTGAATTTCTCGACCAGCCTACACTTTTGGTGAT    782
                     |||||.||..|.||.||.||||||||||||||.|||||..||..||||||
BL01799___ysf    733 ATCATTCCGACGACACTCGAATTTCTCGACCAACCTACGATTCAGGTGAT    782

BSNT_04188___    783 TGAGGATTATGCCAAAATCGGACTGCCAACAAACG-------CAAAGGCG    825
                     .||.||.|..||.||||||||.||.||      ||       |||| |||
BL01799___ysf    783 CGAAGACTTCGCGAAAATCGGCCTTCC------CGTCCATGCCAAA-GCG    825

BSNT_04188___    826 GTTCTATTAATTGAGCAAGACGG-ACCGCTTGAA-ATCGTGGCA------    867
                     |||||..|.||.||.||.||||| |||    ||| ||    |||      
BL01799___ysf    826 GTTCTCCTGATCGAACAGGACGGCACC----GAAGAT----GCAGTTCGC    867

BSNT_04188___    868 CGGGATATGGAAAAGATTGAGGCCATTTGCAAAAAAGGCGACGCCGTTTC    917
                     ||.|||||.|....||||||.|..||||||||||||||..|.||.||.||
BL01799___ysf    868 CGTGATATCGCCGTGATTGAAGAGATTTGCAAAAAAGGAAATGCTGTGTC    917

BSNT_04188___    918 CGTTCAGACCGCACAAACAGAGGAGGAGGC-------ATTCGCCCTGACT    960
                     ||||||.||.||.||||||||.|..||.||       .||||       .
BL01799___ysf    918 CGTTCAAACTGCGCAAACAGAAGCTGAAGCGGAAAATCTTCG-------G    960

BSNT_04188___    961 GAAGCACGGCGCTCTGCACTTTCTGCCCTAGCCCGCCTCAAGCCGACGAC   1010
                     ||.||.||.|||.|.||.|||||.||..||||.||..|.|||||||||||
BL01799___ysf    961 GAGGCCCGCCGCACCGCCCTTTCGGCTTTAGCGCGGTTAAAGCCGACGAC   1010

BSNT_04188___   1011 GATTTTAGAGGATGCGACCGTTCCTCGCTCAGAAATCGCCAATATGGTTA   1060
                     .|||.|.||||||||.||.||.||.||.||.|||||.||..|.|||||.|
BL01799___ysf   1011 CATTCTGGAGGATGCTACGGTACCGCGTTCTGAAATTGCTGAAATGGTAA   1060

BSNT_04188___   1061 AAGCGATTAATGATATTGCTG-------CTAAATATGATATTTCCATCTG   1103
                     |||||||||||...||.||.|       |.|||||       ||.||.||
BL01799___ysf   1061 AAGCGATTAATTCGATCGCCGAAAAGCACCAAATA-------TCGATTTG   1103

BSNT_04188___   1104 CACCTTTGGCCATGCGGGAGACGGGAACCTTCACCCGACATGCACGACAG   1153
                     .||.||.||.||.||.||.|||||.||||||||.|||||.||.|||||||
BL01799___ysf   1104 TACATTCGGGCACGCAGGCGACGGCAACCTTCATCCGACCTGTACGACAG   1153

BSNT_04188___   1154 ACATAAGAAATGAG-GATGAAATGGAGCGTGTCGAACAGGCCTTTGCCGA   1202
                     |..|.||||| .|| ||.||||||.|.||.|||||||||||.||||..||
BL01799___ysf   1154 ATGTCAGAAA-CAGTGAAGAAATGAAACGGGTCGAACAGGCTTTTGAAGA   1202

BSNT_04188___   1203 GATTTTTGAGAAAGCGATTGAACTTGGCGGGACGATAACCGGAGAGCACG   1252
                     .||.|||.|.||||||.|||||||.||.||.||.||.||||||||.||.|
BL01799___ysf   1203 CATCTTTAAAAAAGCGGTTGAACTGGGAGGAACAATTACCGGAGAACATG   1252

BSNT_04188___   1253 GAGTCGGGGCAATGAAAGCGCCTTACTTGGAGATGAAGTTGAAAAAAGAA   1302
                     |.|||||.|.|||||||||.||.||.|||||..|||||.||...||.|..
BL01799___ysf   1253 GGGTCGGCGAAATGAAAGCCCCCTATTTGGAACTGAAGCTGGGCAATGCG   1302

BSNT_04188___   1303 GGCATTGATGCGATGAAAGCGTTGAAAGCGGCATTTGACCCCCGGAACAT   1352
                     ||.||.|..||.|||||.|||.|.|||..||||||.||.||....|||||
BL01799___ysf   1303 GGAATCGCCGCCATGAAGGCGGTAAAACAGGCATTGGATCCAAACAACAT   1352

BSNT_04188___   1353 ATTAAATCCGGGCAAAGTGTTTGCGAAAGATGCCAGAAAACGTGTGGTGG   1402
                     ..|.|||||.||.||..|.|||||||||||..||.|.||.||.|||||||
BL01799___ysf   1353 CATGAATCCCGGGAAGATATTTGCGAAAGACTCCCGCAAGCGAGTGGTGG   1402

BSNT_04188___   1403 CGGAAAGATGA   1413
                     .|..|||||||
BL01799___ysf   1403 TGACAAGATGA   1413


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