Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04189 and BL01798
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:16
# Commandline: needle
# -asequence dna-align/BSNT_04189___ysfD.1.5803.seq
# -bsequence dna-align/BL01798___ysfD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04189___ysfD-BL01798___ysfD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04189___ysfD-BL01798___ysfD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04189___ysfD
# 2: BL01798___ysfD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1418
# Identity: 960/1418 (67.7%)
# Similarity: 960/1418 (67.7%)
# Gaps: 178/1418 (12.6%)
# Score: 3154.0
#
#
#=======================================
BSNT_04189___ 1 ATGACAACAG----AAAAAGAAA------TGAAACAGATCCAAGATAAAT 40
|||||.|||| ..||||||| || ||||| .|.|
BL01798___ysf 1 ATGACGACAGCTGACGAAAGAAAGGTCATTG-AACAG---------CAGT 40
BSNT_04189___ 41 TTAAAGAGCGTATGGATGAAGGCGAGTTATTAAATTGTATGCGCTGCGGC 90
|||||.|..|.||||||||.|..|||.|..|.|||||.||||||||||||
BL01798___ysf 41 TTAAACAAAGAATGGATGAGGAAGAGCTGCTGAATTGCATGCGCTGCGGC 90
BSNT_04189___ 91 TTCTGTCTTCCTTCCTGTCCGACCTATATCGAATCGGGATTTCATGAAAC 140
||||||||.||.||.||.||.|||||.||||||||.||.|||||.||||.
BL01798___ysf 91 TTCTGTCTGCCGTCATGCCCCACCTACATCGAATCCGGTTTTCAAGAAAG 140
BSNT_04189___ 141 ACACTCTCCGCGCGGGCGTATCGCCTTAATGAAAGCCGTAGCGGACGGTA 190
.||.|||||||||||.||.|||||..|.||||||||.||.|..||.||.|
BL01798___ysf 141 CCATTCTCCGCGCGGACGCATCGCGCTCATGAAAGCGGTCGTCGATGGGA 190
BSNT_04189___ 191 TGATTGAACCGGATGAAGATGTCGAACGGTCGCTGTCACTTTGCCTTGGC 240
.|||.||.||.|||||.||||||||||||||.||....||||||||.|||
BL01798___ysf 191 CGATCGAGCCTGATGAGGATGTCGAACGGTCACTCGAGCTTTGCCTCGGC 240
BSNT_04189___ 241 TGCCGCGCCTGTGAGCCTGTATGCCCGTCTGGCGTGAAATACGGTCAGC- 289
||||||||.|||||.|||||.||.|||||.|||||.||.|||||.| ||
BL01798___ysf 241 TGCCGCGCGTGTGAACCTGTTTGTCCGTCAGGCGTAAACTACGGAC-GCT 289
BSNT_04189___ 290 TGCTTGAGGAAGCCAGAGATATTATCCACCAAAATAAAAAACACTC---- 335
|||||||.|||||.|||||||||||.||.||.||.|||||.|||.|
BL01798___ysf 290 TGCTTGAAGAAGCGAGAGATATTATTCAGCAGAACAAAAAGCACGCCTTT 339
BSNT_04189___ 336 -----------GCT---CGGCGCACGTGTCATGCGAAAGGCGGCTTTTCA 371
||| |.||||| || ||.| |||| ||||||||
BL01798___ysf 340 CCGGTTAAAGTGCTTCGCCGCGCA---GT-ATTC-AAAG--GGCTTTTC- 381
BSNT_04189___ 372 CGAGCTGTTTCCGCATCAAAACCGCAT----GCGCTCAGCTGTAAGCCTT 417
||.||||.||||.|.|| |||||.|.|.|.|.||
BL01798___ysf 382 ----------CCCCATCCAAACAGAATCAGGGCGCTGACCGGAATGC--- 418
BSNT_04189___ 418 ATCGGTTTGTATCAGCGGTCAGGACTGCAAACCGCTG-TGCGTAAAACCG 466
||||.|||||||||||.||.||..||||||.|| || |.||.|||.|||
BL01798___ysf 419 -TCGGCTTGTATCAGCGTTCCGGCATGCAAAACG-TGATTCGCAAATCCG 466
BSNT_04189___ 467 GTATGCTTCGCGTCCTGCCTGAGCA-TTTGCGAACGATGGAAGCTGTTCT 515
|..||||.||..|..||||.||.|| .|.||||| ||||||.||.|||.|
BL01798___ysf 467 GCTTGCTCCGGCTTTTGCCGGACCACCTCGCGAA-GATGGAGGCGGTTTT 515
BSNT_04189___ 516 TCCTGATGTTCCAAAAAGCAAAGACATGAAACATCGGCCGC----GTTTC 561
.||..|.|||||.||.|..|||.|..|||||.|.||||||| |.|.|
BL01798___ysf 516 GCCGAAGGTTCCTAATATGAAACAGCTGAAAAAACGGCCGCACCTGCTCC 565
BSNT_04189___ 562 CTGCCGTCAATTGGCCCCATGAAAAAACGGGTCGCCTTTTTTTCGGGCTG 611
||| |.||.||....|..||||||||||.|||||||||.||.|||||
BL01798___ysf 566 CTG----CGATCGGGGAGAGAAAAAAACGGGCCGCCTTTTTCTCAGGCTG 611
BSNT_04189___ 612 CTTAATGGATACGATGTTTT----TACCGACTAACAATGCCA--CATTGA 655
..|.|||||||||.|||||| || |||.| |||.|| |||||
BL01798___ysf 612 TCTCATGGATACGCTGTTTTTGGATA-CGAAT----ATGGCAACCATTG- 655
BSNT_04189___ 656 AGCTTTTACAGCTGGCAGGCTGCGACATTGTCATTCCGCCTGAA---CAG 702
||||..|.|.||||||.||||||||.||..|.||| ||.||| |||
BL01798___ysf 656 AGCTGCTGCGGCTGGCTGGCTGCGAGATCATAATT---CCCGAACAGCAG 702
BSNT_04189___ 703 GCTTGCTGCGGGGCGCTGCATGGACACAGCGGTGAAAAAAACACAGGGAA 752
.|.||||||||.||.||.||.|||||||||.|.||||| |..
BL01798___ysf 703 ACCTGCTGCGGCGCCCTCCACGGACACAGCAGCGAAAA---------GTC 743
BSNT_04189___ 753 AGA---------GCTCGCGAAACAAAATATCGCTGCTTTTGAAGCGTTAG 793
.|| ||||||.||||.||||||....||.||.||.|..|.|.
BL01798___ysf 744 TGAGGCCATCCTGCTCGCAAAACGAAATATTCAGGCATTCGAGGATTCAA 793
BSNT_04189___ 794 ACGTTGATGCTGTCATTACAAACGCAGGAGGATGCGGAGCCTTTCTCACT 843
|||..||...|.||||.|||||.|||||.|||||||||||.|||.|.|..
BL01798___ysf 794 ACGCGGACTTTATCATAACAAATGCAGGCGGATGCGGAGCTTTTTTAAAG 843
BSNT_04189___ 844 GAATATAATCATTTGCTGAAGGATGACCCTGAGTGGTCGGAACGGGCTGC 893
||||||.|||||.|.|||||.||||||.|.||.|||..|||||||||.||
BL01798___ysf 844 GAATATGATCATCTCCTGAAAGATGACTCCGAATGGCGGGAACGGGCAGC 893
BSNT_04189___ 894 TGCGTTTGTTCA----AAAGCTGAAGGATTTTTCTTCTGTTTTGGTTGAG 939
.|..|||| |||..||||.||.||||||||.||.|||.|.||.
BL01798___ysf 894 ----ATCTTTCACAGGAAAATTGAAAGACTTTTCTTCCGTCTTGTTGGAA 939
BSNT_04189___ 940 CTCGATTTCCATCA--AA----TGGATCTAGCGCTCGAGACGCCTCAGGT 983
||..|.|||.|||| || |.||.|| ||..||| ||..|
BL01798___ysf 940 CTGAACTTCGATCAGCAATCCCTTGAACT---GCCGGAG------CAAAT 980
BSNT_04189___ 984 CGTTACCTACCAAGATTCATGCCACCTAAGAAATGTAATGCATACGT-CG 1032
|||.||.|||||||||||.|||||..|..|||||||.|||.|.|||| ||
BL01798___ysf 981 CGTCACATACCAAGATTCGTGCCATTTGCGAAATGTCATGAAAACGTCCG 1030
BSNT_04189___ 1033 CTTGCGCCCCGCCAGCTTCTTAAAAGCATCAAAGGGGC--GGAATTCAAA 1080
| ||.|||..|.|..|||.||...|||||||| |||| .||||||||.
BL01798___ysf 1031 C-TGAGCCGAGACGCCTTATTCGCAGCATCAA--GGGCATTGAATTCAAG 1077
BSNT_04189___ 1081 GAAATGGAGAAAGCAGACAGCTGCTGCGGATCAGCGGGAATTTACAACAT 1130
||||||.|.||.||.||.||||||||.||||||||.||.|||||.|||||
BL01798___ysf 1078 GAAATGAAAAATGCCGAAAGCTGCTGTGGATCAGCCGGCATTTATAACAT 1127
BSNT_04189___ 1131 CGTCGAAGCTGAAATGTCTATGAGAATACTGGACAGTAAAATGGCTGCCG 1180
.||||||.|.||||||||.||||.|||.||.||.|.||||||||
BL01798___ysf 1128 TGTCGAATCCGAAATGTCGATGAAAATTCTCGATACTAAAATGG------ 1171
BSNT_04189___ 1181 TCAAAGCAACCGAAGCGATCC---------TCATTGTAACAGCAAATCCC 1221
|||||.|.|.|||||.|| ..||.||.||.||.||||||
BL01798___ysf 1172 ---AAGCAGCAGCAGCGACCCGGGCCGCTACGATCGTTACGGCTAATCCC 1218
BSNT_04189___ 1222 GGCTGCCTGCTGCAGATGAAGCTCGGCATTGAACGCGAAGGACT----AA 1267
||.||.||||||||.||||||||||||||||||||.|.|||||| .|
BL01798___ysf 1219 GGATGTCTGCTGCAAATGAAGCTCGGCATTGAACGAGCAGGACTTACAGA 1268
BSNT_04189___ 1268 GCGGTAAAGTCAGAGCCGTTCACCTGGCTGATTTGCTATTGGAAGCAGCC 1317
.|| |||.|||||||||||.|||||.|||||..||.|||| ||||
BL01798___ysf 1269 CCG----AGTGAGAGCCGTTCATCTGGCGGATTTATTACTGGA---AGCC 1311
BSNT_04189___ 1318 GGGCACAAACCATCATGA 1335
|..||.|| .|||
BL01798___ysf 1312 GTCCAGAA------GTGA 1323
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